Origin IGS: aataattgaaagaattaatgatttaataatgcggactttttctgtccattaatttaataatagcaatcgagagatcgattcggcgccatcctcttctctctgtttgcactgcaaagataagggtaaagaaactgatcgtccaaatgttttgcagaaaaaagttttcaacaacgaagggcgctttacgctttatatataaaacggcttccgtatttcttatacaaaggcttcgaagcactcttccggctttcgtaaggggagctgaaatccggttattcggagttgtccgaatgatttatatataaagtattttcgatttgtatataaatcgatttttatttatatataaatcgatttttatttatatattaatcgttttcattttgtatataaatcgaaaacgttttatatatagatcgtcagccgttcgatggggaaaagacgccgaagaaacttttcttgaaagcataaaaaagcaaggcacccgctcggagttcgacaggaacttcggcgggtgtcttgctttttgtcgtgagggatagagtcccttttcttgt .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 acaagaaaagggactctatccctcacgacaaaaagcaagacacccgccgaagttcctgtcgaactccgagcgggtgccttgcttttttatgctttcaagaaaagtttcttcggcgtcttttccccatcgaacggctgacgatctatatataaaacgttttcgatttatatacaaaatgaaaacgattaatatataaataaaaatcgatttatatataaataaaaatcgatttatatacaaatcgaaaatactttatatataaatcattcggacaactccgaataaccggatttcagctccccttacgaaagccggaagagtgcttcgaagcctttgtataagaaatacggaagccgttttatatataaagcgtaaagcgcccttcgttgttgaaaacttttttctgcaaaacatttggacgatcagtttctttacccttatctttgcagtgcaaacagagagaagaggatggcgccgaatcgatctctcgattgctattattaaattaatggacagaaaaagtccgcattattaaatcattaattctttcaattatt Mask Tandem Repeat Region ================================================ aataattgaaagaattaatgatttaataatgcggactttttctgtccattaatttaataatagcaatcgagagatcgattcggcgccatcctcttctctctgtttgcactgcaaagataagggtaaagaaactgatcgtccaaatgttttgcagaaaaaagttttcaacaacgaagggcgctttacgctttatatataaaacggcttccgtatttcttatacaaaggcttcgaagcactcttccggctttcgtaaggggagctgaaatccggttattcggagttgtccgaatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaacgttttatatatagatcgtcagccgttcgatggggaaaagacgccgaagaaacttttcttgaaagcataaaaaagcaaggcacccgctcggagttcgacaggaacttcggcgggtgtcttgctttttgtcgtgagggatagagtcccttttcttgt Find is-nt database================================================ Query_seq: PG0566:PG0568|PG0566:PG0568:DNA-binding protein, histone-like family:elongation factor P:<-<-:623532..624088 557 aataattgaaagaattaatgatttaataatgcggactttttctgtccattaatttaataatagcaatcgagagatcgattcggcgccatcctcttctctctgtttgcactgcaaagataagggtaaagaaactgatcgtccaaatgttttgcagaaaaaagttttcaacaacgaagggcgctttacgctttatatataaaacggcttccgtatttcttatacaaaggcttcgaagcactcttccggctttcgtaaggggagctgaaatccggttattcggagttgtccgaatgatttatatataaagtattttcgatttgtatataaatcgatttttatttatatataaatcgatttttatttatatattaatcgttttcattttgtatataaatcgaaaacgttttatatatagatcgtcagccgttcgatggggaaaagacgccgaagaaacttttcttgaaagcataaaaaagcaaggcacccgctcggagttcgacaggaacttcggcgggtgtcttgctttttgtcgtgagggatagagtcccttttcttgt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PG0566:PG0568|PG0566:PG0568:DNA-binding protein, histone-like family:elongation factor P:<-<-:623532..624088 557 aataattgaaagaattaatgatttaataatgcggactttttctgtccattaatttaataatagcaatcgagagatcgattcggcgccatcctcttctctctgtttgcactgcaaagataagggtaaagaaactgatcgtccaaatgttttgcagaaaaaagttttcaacaacgaagggcgctttacgctttatatataaaacggcttccgtatttcttatacaaaggcttcgaagcactcttccggctttcgtaaggggagctgaaatccggttattcggagttgtccgaatgatttatatataaagtattttcgatttgtatataaatcgatttttatttatatataaatcgatttttatttatatattaatcgttttcattttgtatataaatcgaaaacgttttatatatagatcgtcagccgttcgatggggaaaagacgccgaagaaacttttcttgaaagcataaaaaagcaaggcacccgctcggagttcgacaggaacttcggcgggtgtcttgctttttgtcgtgagggatagagtcccttttcttgt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PG0566:PG0568|PG0566:PG0568:DNA-binding protein, histone-like family:elongation factor P:<-<-:623532..624088 557 aataattgaaagaattaatgatttaataatgcggactttttctgtccattaatttaataatagcaatcgagagatcgattcggcgccatcctcttctctctgtttgcactgcaaagataagggtaaagaaactgatcgtccaaatgttttgcagaaaaaagttttcaacaacgaagggcgctttacgctttatatataaaacggcttccgtatttcttatacaaaggcttcgaagcactcttccggctttcgtaaggggagctgaaatccggttattcggagttgtccgaatgatttatatataaagtattttcgatttgtatataaatcgatttttatttatatataaatcgatttttatttatatattaatcgttttcattttgtatataaatcgaaaacgttttatatatagatcgtcagccgttcgatggggaaaagacgccgaagaaacttttcttgaaagcataaaaaagcaaggcacccgctcggagttcgacaggaacttcggcgggtgtcttgctttttgtcgtgagggatagagtcccttttcttgt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 aataattgaaagaattaatgatttaataatgcggactttttctgtccattaatttaataatagcaatcgagagatcgattcggcgccatcctcttctctctgtttgcactgcaaagataagggtaaagaaactgatcgtccaaatgttttgcagaaaaaagttttcaacaacgaagggcgctttacgctttatatataaaacggcttccgtatttcttatacaaaggcttcgaagcactcttccggctttcgtaaggggagctgaaatccggttattcggagttgtccgaatgatttatatataaagtattttcgatttgtatataaatcgatttttatttatatataaatcgatttttatttatatattaatcgttttcattttgtatataaatcgaaaacgttttatatatagatcgtcagccgttcgatggggaaaagacgccgaagaaacttttcttgaaagcataaaaaagcaaggcacccgctcggagttcgacaggaacttcggcgggtgtcttgctttttgtcgtgagggatagagtcccttttcttgt Predict ORF larger than 30AA ================================================ Protein_Len: 41 Strand: + Start: 74 End: 196 ......................................................................... M D S A P S S S L C L H C K D K G K E T D R P N V L Q K K V F N N E G R F T L Y I ......................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 42 End: 302 ......................................... M S I N L I I A I E R S I R R H P L L S V C T A K I R V K K L I V Q M F C R K K F S T T K G A L R F I Y K T A S V F L I ............................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 309 End: 539 .................................................................................................................................................................................................................................................................................................................... M F D L Y I N R F L F I Y K S I F I Y I L I V F I L Y I N R K R F I Y R S S A V R W G K D A E E T F L E S I K K Q G T R .................. Protein_Len: 44 Strand: - Start: 409 End: 540 ........................................................................................................................................................................................................................................................................................................................................................................................................................ I Y I T L R E I P F L R R L F K E Q F C L F A L C G S P T R C S S R R T D Q K K D H P M ................. Protein_Len: 46 Strand: - Start: 365 End: 502 ............................................................................................................................................................................................................................................................................................................................................................................ I N I T K M K Y I F R F R K I Y L D D A T R H P F S A S S V K R S L M F F C P V R E S N S M ....................................................... Protein_Len: 40 Strand: - Start: 220 End: 339 ........................................................................................................................................................................................................................... V F A E F C E E P K R L P L Q F G T I R L Q G F S K Y I F Y K R N T Y L D I K M .......................................................................................................................................................................................................................... Protein_Len: 40 Strand: - Start: 52 End: 171 ................................................... N L L L L R S I S E A G D E E R Q K C Q L S L P L S V S R G F T K C F F T K L M .................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 60 Strand: - Start: 26 End: 295 ......................... I L T F F S I T W I N Q L F F N E V V F P A K R K I Y L V A E T N R I C L S R L V R G A K T L P A S I R N N P T T R I M ...................................................................................................................................................................................................................................................................... aataattgaaagaattaatgatttaataatgcggactttttctgtccattaatttaataatagcaatcgagagatcgattcggcgccatcctcttctctctgtttgcactgcaaagataagggtaaagaaactgatcgtccaaatgttttgcagaaaaaagttttcaacaacgaagggcgctttacgctttatatataaaacggcttccgtatttcttatacaaaggcttcgaagcactcttccggctttcgtaaggggagctgaaatccggttattcggagttgtccgaatgatttatatataaagtattttcgatttgtatataaatcgatttttatttatatataaatcgatttttatttatatattaatcgttttcattttgtatataaatcgaaaacgttttatatatagatcgtcagccgttcgatggggaaaagacgccgaagaaacttttcttgaaagcataaaaaagcaaggcacccgctcggagttcgacaggaacttcggcgggtgtcttgctttttgtcgtgagggatagagtcccttttcttgt Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ aataattgaaagaattaatgatttaataatgcggactttttctgtccattaatttaataatagcaatcgagagatcgattcggcgccatcctcttctctctgtttgcactgcaaagataagggtaaagaaactgatcgtccaaatgttttgcagaaaaaagttttcaacaacgaagggcgctttacgctttatatataaaacggcttccgtatttcttatacaaaggcttcgaagcactcttccggctttcgtaaggggagctgaaatccggttattcggagttgtccgaatgatttatatataaagtattttcgatttgtatataaatcgatttttatttatatataaatcgatttttatttatatattaatcgttttcattttgtatataaatcgaaaacgttttatatatagatcgtcagccgttcgatggggaaaagacgccgaagaaacttttcttgaaagcataaaaaagcaaggcacccgctcggagttcgacaggaacttcggcgggtgtcttgctttttgtcgtgagggatagagtcccttttcttgt Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 79 HP_score: -8.1 Tail_Score: -4.13246 Start: 273 End: 294 Full_Region: GGAGCTGAAATCCGG TTATTCGGA GTTG TCCGAATGA TTTATATATAAAGTA ................................................................................................................................................................................................................................................................................TTATTCGGAGTTGTCCGAATGA....................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 46 HP_score: -3.8 Tail_Score: -2.88868 Start: 293 End: 330 Full_Region: CGGAGTTGTCCGAAT GATTTATATATAAA GTATTTTCGA TTTGTATATAAATC GATTTTTATTTATAT ....................................................................................................................................................................................................................................................................................................GATTTATATATAAAGTATTTTCGATTTGTATATAAATC................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 100 HP_score: -9.9 Tail_Score: -5.4433 Start: 313 End: 354 Full_Region: ATATATAAAGTATTT TCGATTTGTATATAAAT CGATTTTT ATTTATATATAAATCGA TTTTTATTTATATAT ........................................................................................................................................................................................................................................................................................................................TCGATTTGTATATAAATCGATTTTTATTTATATATAAATCGA........................................................................................................................................................................................................... TransTerm Strand: + Conf: 75 HP_score: -7.3 Tail_Score: -4.22927 Start: 323 End: 360 Full_Region: TATTTTCGATTTGTA TATAAATCGATTTTTAT TTAT ATATAAATCGATTTTTA TTTATATATTAATCG ..................................................................................................................................................................................................................................................................................................................................TATAAATCGATTTTTATTTATATATAAATCGATTTTTA..................................................................................................................................................................................................... TransTerm Strand: + Conf: 45 HP_score: -2.1 Tail_Score: -3.39207 Start: 343 End: 368 Full_Region: ATCGATTTTTATTTA TATATAAAT CGATTTTT ATTTATATA TTAATCGTTTTCATT ......................................................................................................................................................................................................................................................................................................................................................TATATAAATCGATTTTTATTTATATA............................................................................................................................................................................................. TransTerm Strand: + Conf: 100 HP_score: -23.7 Tail_Score: -4.91109 Start: 476 End: 523 Full_Region: TGAAAGCATAAAAAA GCAAGGCACCCGCTCGGAGTTC GACAG GAACTTCGGCGGGTGTCTTGC TTTTTGTCGTGAGGG ...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGGCACCCGCTCGGAGTTCGACAGGAACTTCGGCGGGTGTCTTGC.................................. TransTerm Strand: - Conf: 100 HP_score: -19.3 Tail_Score: -5.42265 Start: 476 End: 523 Full_Region: ccctcacgacaaaaa gcaagacacccgccgaagttc ctgtc gaactccgagcgggtgccttgc ttttttatgctttca ...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gcaagacacccgccgaagttcctgtcgaactccgagcgggtgccttgc.................................. Find igs database================================================ Query_seq: PG0566:PG0568|PG0566:PG0568:DNA-binding protein, histone-like family:elongation factor P:<-<-:623532..624088 557 aataattgaaagaattaatgatttaataatgcggactttttctgtccattaatttaataatagcaatcgagagatcgattcggcgccatcctcttctctctgtttgcactgcaaagataagggtaaagaaactgatcgtccaaatgttttgcagaaaaaagttttcaacaacgaagggcgctttacgctttatatataaaacggcttccgtatttcttatacaaaggcttcgaagcactcttccggctttcgtaaggggagctgaaatccggttattcggagttgtccgaatgatttatatataaagtattttcgatttgtatataaatcgatttttatttatatataaatcgatttttatttatatattaatcgttttcattttgtatataaatcgaaaacgttttatatatagatcgtcagccgttcgatggggaaaagacgccgaagaaacttttcttgaaagcataaaaaagcaaggcacccgctcggagttcgacaggaacttcggcgggtgtcttgctttttgtcgtgagggatagagtcccttttcttgt Intra-Species Hit: Count: 2 Min: 1 Max: 557 Len: 557 Subject: NC_002950_PG0566_PG0568|DNA-binding protein, histone-like family:elongation factor P|NEGATIVE:NEGATIVE|[623532,624088]|557 HSP 1 e-value: 1.0E-164 bit: 581.0 Len: 293 Query Start:1 Query End:293 Subject Strand: POSITIVE Subject Start: 1 Subject End: 293 aataattgaaagaattaatgatttaataatgcggactttttctgtccattaatttaataatagcaatcgagagatcgattcggcgccatcctcttctctctgtttgcactgcaaagataagggtaaagaaactgatcgtccaaatgttttgcagaaaaaagttttcaacaacgaagggcgctttacgctttatatataaaacggcttccgtatttcttatacaaaggcttcgaagcactcttccggctttcgtaaggggagctgaaatccggttattcggagttgtccgaatg........................................................................................................................................................................................................................................................................ aataattgaaagaattaatgatttaataatgcggactttttctgtccattaatttaataatagcaatcgagagatcgattcggcgccatcctcttctctctgtttgcactgcaaagataagggtaaagaaactgatcgtccaaatgttttgcagaaaaaagttttcaacaacgaagggcgctttacgctttatatataaaacggcttccgtatttcttatacaaaggcttcgaagcactcttccggctttcgtaaggggagctgaaatccggttattcggagttgtccgaatg........................................................................................................................................................................................................................................................................ HSP 2 e-value: 3.0E-75 bit: 283.0 Len: 143 Query Start:415 Query End:557 Subject Strand: POSITIVE Subject Start: 415 Subject End: 557 ..............................................................................................................................................................................................................................................................................................................................................................................................................................gatcgtcagccgttcgatggggaaaagacgccgaagaaacttttcttgaaagcataaaaaagcaaggcacccgctcggagttcgacaggaacttcggcgggtgtcttgctttttgtcgtgagggatagagtcccttttcttgt ..............................................................................................................................................................................................................................................................................................................................................................................................................................gatcgtcagccgttcgatggggaaaagacgccgaagaaacttttcttgaaagcataaaaaagcaaggcacccgctcggagttcgacaggaacttcggcgggtgtcttgctttttgtcgtgagggatagagtcccttttcttgt Subject: NC_002950_PG1274_PG1276|elongation factor P:DNA-binding protein, histone-like family|POSITIVE:POSITIVE|[1352550,1353084]|535 HSP 1 e-value: 1.0E-162 bit: 573.0 Len: 293 Query Start:1 Query End:293 Subject Strand: NEGATIVE Subject Start: 243 Subject End: 535 aataattgaaagaattaatgatttaataatgcggactttttctgtccattaatttaataatagcaatcgagagatcgattcggcgccatcctcttctctctgtttgcactgcaaagataagggtaaagaaactgatcgtccaaatgttttgcagaaaaaagttttcaacaacgaagggcgctttacgctttatatataaaacggcttccgtatttcttatacaaaggcttcgaagcactcttccggctttcgtaaggggagctgaaatccggttattcggagttgtccgaatg........................................................................................................................................................................................................................................................................ aataattgaaagaattaatgatttaataatgcggactttttctgtccattaatttaataatagcaatcgagagatcgattcggcgccatcctcttctctctgtttgcactgcaaagataagggtaaagaaactgatcgtccaaatgttttgcagaaaaaagttttcaacaacgaagggcgctttacgctttatatataaaacggcttccgtatttcttatacaaaggcttcgaagcactcttccggctttcgtaaggggagctgaaatccggttattcggcgttgtccgaatg........................................................................................................................................................................................................................................................................ HSP 2 e-value: 4.0E-47 bit: 190.0 Len: 143 Query Start:415 Query End:557 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 143 ..............................................................................................................................................................................................................................................................................................................................................................................................................................gatcgtcagccgttcgatggggaaaagacgccgaagaaacttttcttgaaagcataaaaaagcaaggcacccgctcggagttcgacaggaacttcg-gcgggtgtcttgctttttgtcgtgagggatagagtcccttttcttgt ..............................................................................................................................................................................................................................................................................................................................................................................................................................gatcgtcagccgttcgatggggaaaagacgccgaagaaacttttcttgaaagcataaaaaagcaaggcacccgc-cgaagttcctgtcgaactccgagcgggtgccttgctttttgtcgtgagggatagagtcccttttcttgt HSP 3 e-value: 4.0E-22 bit: 107.0 Len: 58 Query Start:471 Query End:528 Subject Strand: POSITIVE Subject Start: 30 Subject End: 87 ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................aaaaagcaaggcacccgctcggagttcgacaggaacttcggcgggtgtcttgcttttt............................. ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................aaaaagcaaggcacccgctcggagttcgacaggaacttcggcgggtgccttgcttttt............................. Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AAUAAUUGAAAGAAUUAAUGAUUUAAUAAUGCGGACUUUUUCUGUCCAUUAAUUUAAUAAUAGCAAUCGAGAGAUCGAUUCGGCGCCAUCCUCUUCUCUCUGUUUGCACUGCAAAGAUAAGGGUAAAGAAACUGAUCGUCCAAAUGUUUUGCAGAAAAAAGUUUUCAACAACGAAGGGCGCUUUACGCUUUAUAUAUAAAACGGCUUCCGUAUUUCUUAUACAAAGGCUUCGAAGCACUCUUCCGGCUUUCGUAAGGGGAGCUGAAAUCCGGUUAUUCGGAGUUGUCCGAAUGAUUUAUAUAUAAAGUAUUUUCGAUUUGUAUAUAAAUCGAUUUUUAUUUAUAUAUAAAUCGAUUUUUAUUUAUAUAUUAAUCGUUUUCAUUUUGUAUAUAAAUCGAAAACGUUUUAUAUAUAGAUCGUCAGCCGUUCGAUGGGGAAAAGACGCCGAAGAAACUUUUCUUGAAAGCAUAAAAAAGCAAGGCACCCGCUCGGAGUUCGACAGGAACUUCGGCGGGUGUCUUGCUUUUUGUCGUGAGGGAUAGAGUCCCUUUUCUUGU .......(((((.(((((....))))).....(((((((.(((.(((...............((..((((((((....(((((((.......................((((((((.....((....((......))..)).....)))))))).......(((((..((.((((.(((.......(((((((((((((..((((((((.(........(((.((((((..((((....)))).)))))).)))).)))))))).......((((((((((....))))))))))))))))))))))).....(((((((((((((((.((.((((.(((((((((((((.(((((..(((....)))..))))).......))))))))))))).)))).)).)))))))))))))))...))).)))).))..)))))..)))))))......))))))))..))...((((((((((((((((((.((((((((.....))))))))))))))))))))))))))...).)).))).))))))).))))).... (-191.30) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ ACAAGAAAAGGGACUCUAUCCCUCACGACAAAAAGCAAGACACCCGCCGAAGUUCCUGUCGAACUCCGAGCGGGUGCCUUGCUUUUUUAUGCUUUCAAGAAAAGUUUCUUCGGCGUCUUUUCCCCAUCGAACGGCUGACGAUCUAUAUAUAAAACGUUUUCGAUUUAUAUACAAAAUGAAAACGAUUAAUAUAUAAAUAAAAAUCGAUUUAUAUAUAAAUAAAAAUCGAUUUAUAUACAAAUCGAAAAUACUUUAUAUAUAAAUCAUUCGGACAACUCCGAAUAACCGGAUUUCAGCUCCCCUUACGAAAGCCGGAAGAGUGCUUCGAAGCCUUUGUAUAAGAAAUACGGAAGCCGUUUUAUAUAUAAAGCGUAAAGCGCCCUUCGUUGUUGAAAACUUUUUUCUGCAAAACAUUUGGACGAUCAGUUUCUUUACCCUUAUCUUUGCAGUGCAAACAGAGAGAAGAGGAUGGCGCCGAAUCGAUCUCUCGAUUGCUAUUAUUAAAUUAAUGGACAGAAAAAGUCCGCAUUAUUAAAUCAUUAAUUCUUUCAAUUAUU ..(((((.(((((.....)))))...((.((((((((((.(((((((((.(((((.....))))).)).))))))).))))))))))...((..((.(((...(((..(((((((((...(((.((.((((.(((..(((...(((((((((((((((((((((((.((((((((.(((((..((((.(((((((((......(((((((.(((((((((........))))))))).)))))))......))))))))).)))).((((((....))))))........)))))......(((.((((.(((....).))..)))))))..))))))))..)))).)))))).)))))))))))))...))).....))).)))).)).......((((((((((.......((((.((...(((.................)))..)).)))))))))))))).))).)))))))))..))).))).))..))...............((((.......))))...........)).....)))))......... (-159.84) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 1007 110 61 201 152 NC_002950:PG1276|5end_DNA-binding_protein,_histone-like_family_1352945..1353175_POSITIVE 1007 110 61 201 152 NC_002950:PG0566|5end_DNA-binding_protein,_histone-like_family_623441..623671_NEGATIVE 558 527 481 44 1 NC_002950:PG0371|5end_hypothetical_protein_404043..404273_POSITIVE 551 520 476 78 34 NC_002950:PG1223|5end_hypothetical_protein_1299461..1299691_POSITIVE 504 530 481 147 100 NC_002950:PG1695|5end_hypothetical_protein_1779440..1779670_POSITIVE 454 549 501 142 94 NC_002950:PG1494|5end_hypothetical_protein_1569841..1570071_POSITIVE 447 264 226 219 173 NC_002950:PG2107|5end_thiamine_biosynthesis_protein_ThiH_2216658..2216888_NEGATIVE 442 280 231 132 78 NC_002950:PG0031|5end_hypothetical_protein_37579..37809_NEGATIVE 428 538 495 103 48 NC_002950:PG0918|5end_hypothetical_protein_978818..979048_NEGATIVE 427 290 243 191 134 NC_002950:PG2076|5end_hypothetical_protein_2176445..2176675_POSITIVE 427 290 243 191 134 NC_002950:PG1267|5end_hypothetical_protein_1346966..1347196_POSITIVE 425 527 481 213 159 NC_002950:PG1713|5end_lipoprotein,_putative_1801811..1802041_NEGATIVE 410 278 231 83 28 NC_002950:PG2082|5end_POT_family_protein_2183384..2183614_NEGATIVE 409 104 67 64 19 NC_002950:PG0655|5end_hypothetical_protein_706712..706942_POSITIVE 406 547 506 195 155 NC_002950:PG2080|5end_adenosylmethionine--8-amino-7-oxononanoate_transaminase_2180679..2180909_NEGATIVE 403 527 481 68 16 NC_002950:PG1036|5end_excinuclease_ABC,_A_subunit_1098436..1098666_POSITIVE 402 519 474 227 179 NC_002950:PG0593|5end_htrA_protein_650362..650592_POSITIVE 401 548 506 213 177 NC_002950:PG0201|5end_ribonuclease_P_238770..239000_NEGATIVE 400 108 63 199 160 NC_002950:PG0657|5end_Maf-like_protein_707782..708012_NEGATIVE 398 290 243 191 134 NC_002950:PG1672|5end_hypothetical_protein_1757637..1757867_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 904 550 503 83 35 NC_002950:PG1274|3end_elongation_factor_P_1352489..1352639_POSITIVE 558 527 481 145 102 NC_002950:PG0371|3end_hypothetical_protein_404224..404374_POSITIVE 482 519 482 36 1 NC_002950:PG1889|3end_hypothetical_protein_1987090..1987240_POSITIVE 442 280 231 84 30 NC_002950:PG0032|3end_beta-mannosidase,_putative_37627..37777_NEGATIVE 418 540 491 147 102 NC_002950:PG0684|3end_ABC_transporter,_permease_protein,_putative_740103..740253_POSITIVE 414 289 243 65 15 NC_002950:PG0443|3end_hemagglutinin-related_protein_483147..483297_POSITIVE 410 278 231 57 2 NC_002950:PG2083|3end_hypothetical_protein_2183410..2183560_NEGATIVE 398 550 505 138 93 NC_002950:PG1788|3end_cysteine_peptidase,_putative_1877327..1877477_POSITIVE 396 109 63 114 62 NC_002950:PG0745|3end_lactoylglutathione_lyase,_putative_791982..792132_NEGATIVE 392 549 507 61 17 NC_002950:PG1210|3end_peptidase,_M24_family_1290911..1291061_POSITIVE 376 274 231 86 43 NC_002950:PG0537|3end_aminoacyl-histidine_dipeptidase_588394..588544_POSITIVE 371 419 383 44 8 NC_002950:PG0773|3end_hypothetical_protein_825348..825498_POSITIVE 367 530 485 146 105 NC_002950:PG1369|3end_glycerol-3-phosphate_dehydrogenase_(NAD(P)+)_1449403..1449553_NEGATIVE 366 540 491 140 83 NC_002950:PG0756|3end_hypothetical_protein_804321..804471_NEGATIVE 363 111 73 130 78 NC_002950:PG1276|3end_DNA-binding_protein,_histone-like_family_1353531..1353681_POSITIVE 363 111 73 130 78 NC_002950:PG0566|3end_DNA-binding_protein,_histone-like_family_622935..623085_NEGATIVE 358 457 416 108 65 NC_002950:PG2218|3end_potassium_uptake_protein_TrkA_2333000..2333150_POSITIVE 358 106 63 56 2 NC_002950:PG1640|3end_DNA-damage-inducible_protein_F_1719935..1720085_NEGATIVE 356 519 474 92 36 NC_002950:PG2207|3end_hypothetical_protein_2319142..2319292_NEGATIVE 353 519 475 88 29 NC_002950:PG1724|3end_O-sialoglycoprotein_endopeptidase_1814846..1814996_POSITIVE