Origin IGS: ggcagacagccaagaaagaaaaagagctgtaactaaatcgaagtcagcctgttgatggagtttaaggggaaactatttttgccggcctcaatagcagaagtcggtttttatcttgtcccaaagaggaggttttgggttctatattatcttttcaaaacgttaaataagcataaacacgcagtttttgccccccgataatatgttgtttagcataaagtgattatatttgtggtgtgtttttcatggtattagattttaaggttaattggagagcgagacgtcgtgagacgtttcgctctcgtttttttgtaccggtctttatcggtcgtaacccttatctgttgcagcgacttttgccttttcaagaagaattccctgtaatcggttggaacctttgtcataagagagaaaataaaacaggcccccctttgtagcaaggaggacttgtctttcgaattgtttttatcgttagagcttcatcggagcaagggatgaagctctctttttgtctctttcagacttggatcatttt .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 aaaatgatccaagtctgaaagagacaaaaagagagcttcatcccttgctccgatgaagctctaacgataaaaacaattcgaaagacaagtcctccttgctacaaaggggggcctgttttattttctctcttatgacaaaggttccaaccgattacagggaattcttcttgaaaaggcaaaagtcgctgcaacagataagggttacgaccgataaagaccggtacaaaaaaacgagagcgaaacgtctcacgacgtctcgctctccaattaaccttaaaatctaataccatgaaaaacacaccacaaatataatcactttatgctaaacaacatattatcggggggcaaaaactgcgtgtttatgcttatttaacgttttgaaaagataatatagaacccaaaacctcctctttgggacaagataaaaaccgacttctgctattgaggccggcaaaaatagtttccccttaaactccatcaacaggctgacttcgatttagttacagctctttttctttcttggctgtctgcc Mask Tandem Repeat Region ================================================ ggcagacagccaagaaagaaaaagagctgtaactaaatcgaagtcagcctgttgatggagtttaaggggaaactatttttgccggcctcaatagcagaagtcggtttttatcttgtcccaaagaggaggttttgggttctatattatcttttcaaaacgttaaataagcataaacacgcagtttttgccccccgataatatgttgtttagcataaagtgattatatttgtggtgtgtttttcatggtattagattttaaggttaattggagagcgagacgtcgtgagacgtttcgctctcgtttttttgtaccggtctttatcggtcgtaacccttatctgttgcagcgacttttgccttttcaagaagaattccctgtaatcggttggaacctttgtcataagagagaaaataaaacaggcccccctttgtagcaaggaggacttgtctttcgaattgtttttatcgttagagcttcatcggagcaagggatgaagctctctttttgtctctttcagacttggatcatttt Find is-nt database================================================ Query_seq: PG0557:PG0558|PG0557:PG0558:hypothetical protein:purine nucleoside phosphorylase:-><-:615068..615599 532 ggcagacagccaagaaagaaaaagagctgtaactaaatcgaagtcagcctgttgatggagtttaaggggaaactatttttgccggcctcaatagcagaagtcggtttttatcttgtcccaaagaggaggttttgggttctatattatcttttcaaaacgttaaataagcataaacacgcagtttttgccccccgataatatgttgtttagcataaagtgattatatttgtggtgtgtttttcatggtattagattttaaggttaattggagagcgagacgtcgtgagacgtttcgctctcgtttttttgtaccggtctttatcggtcgtaacccttatctgttgcagcgacttttgccttttcaagaagaattccctgtaatcggttggaacctttgtcataagagagaaaataaaacaggcccccctttgtagcaaggaggacttgtctttcgaattgtttttatcgttagagcttcatcggagcaagggatgaagctctctttttgtctctttcagacttggatcatttt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PG0557:PG0558|PG0557:PG0558:hypothetical protein:purine nucleoside phosphorylase:-><-:615068..615599 532 ggcagacagccaagaaagaaaaagagctgtaactaaatcgaagtcagcctgttgatggagtttaaggggaaactatttttgccggcctcaatagcagaagtcggtttttatcttgtcccaaagaggaggttttgggttctatattatcttttcaaaacgttaaataagcataaacacgcagtttttgccccccgataatatgttgtttagcataaagtgattatatttgtggtgtgtttttcatggtattagattttaaggttaattggagagcgagacgtcgtgagacgtttcgctctcgtttttttgtaccggtctttatcggtcgtaacccttatctgttgcagcgacttttgccttttcaagaagaattccctgtaatcggttggaacctttgtcataagagagaaaataaaacaggcccccctttgtagcaaggaggacttgtctttcgaattgtttttatcgttagagcttcatcggagcaagggatgaagctctctttttgtctctttcagacttggatcatttt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PG0557:PG0558|PG0557:PG0558:hypothetical protein:purine nucleoside phosphorylase:-><-:615068..615599 532 ggcagacagccaagaaagaaaaagagctgtaactaaatcgaagtcagcctgttgatggagtttaaggggaaactatttttgccggcctcaatagcagaagtcggtttttatcttgtcccaaagaggaggttttgggttctatattatcttttcaaaacgttaaataagcataaacacgcagtttttgccccccgataatatgttgtttagcataaagtgattatatttgtggtgtgtttttcatggtattagattttaaggttaattggagagcgagacgtcgtgagacgtttcgctctcgtttttttgtaccggtctttatcggtcgtaacccttatctgttgcagcgacttttgccttttcaagaagaattccctgtaatcggttggaacctttgtcataagagagaaaataaaacaggcccccctttgtagcaaggaggacttgtctttcgaattgtttttatcgttagagcttcatcggagcaagggatgaagctctctttttgtctctttcagacttggatcatttt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 ggcagacagccaagaaagaaaaagagctgtaactaaatcgaagtcagcctgttgatggagtttaaggggaaactatttttgccggcctcaatagcagaagtcggtttttatcttgtcccaaagaggaggttttgggttctatattatcttttcaaaacgttaaataagcataaacacgcagtttttgccccccgataatatgttgtttagcataaagtgattatatttgtggtgtgtttttcatggtattagattttaaggttaattggagagcgagacgtcgtgagacgtttcgctctcgtttttttgtaccggtctttatcggtcgtaacccttatctgttgcagcgacttttgccttttcaagaagaattccctgtaatcggttggaacctttgtcataagagagaaaataaaacaggcccccctttgtagcaaggaggacttgtctttcgaattgtttttatcgttagagcttcatcggagcaagggatgaagctctctttttgtctctttcagacttggatcatttt Predict ORF larger than 30AA ================================================ Protein_Len: 30 Strand: + Start: 75 End: 164 .......................................................................... M F A G L N S R S R F L S C P K E E V L G S I L S F Q N V K ................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 53 Strand: + Start: 37 End: 195 .................................... M E V S L L M E F K G K L F L P A S I A E V G F Y L V P K R R F W V L Y Y L F K T L N K H K H A V F A P R ................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 42 Strand: + Start: 253 End: 378 ............................................................................................................................................................................................................................................................ M L R L I G E R D V V R R F A L V F L Y R S L S V V T L I C C S D F C L F K K N S L .......................................................................................................................................................... Protein_Len: 60 Strand: + Start: 225 End: 431 ................................................................................................................................................................................................................................ M C G V F F M V L D F K V N W R A R R R E T F R S R F F V P V F I G R N P Y L L Q R L L P F Q E E F P V I G W N L C H K ..................................................................................................... Protein_Len: 31 Strand: + Start: 400 End: 492 ............................................................................................................................................................................................................................................................................................................................................................................................................... M R E K I K Q A P L C S K E D L S F E L F L S L E L H R S K G ........................................ Protein_Len: 31 Strand: - Start: 401 End: 493 ................................................................................................................................................................................................................................................................................................................................................................................................................ L L S F L V P G G K Y C P P S T K R I T K I T L A E D S C P M ....................................... Protein_Len: 33 Strand: - Start: 322 End: 420 ................................................................................................................................................................................................................................................................................................................................. R D Y G K D T A A V K A K E L L I G Q L R N S G K D Y S L F Y F M ................................................................................................................ Protein_Len: 60 Strand: - Start: 252 End: 437 ........................................................................................................................................................................................................................................................... L N I P S R S T T L R K A R T K K Y R D K D T T V R I Q Q L S K Q R K L F F E R Y D T P V K T M L S F I F C A G R Q L M ............................................................................................... Protein_Len: 33 Strand: - Start: 224 End: 322 ............................................................................................................................................................................................................................... I Q P T N K M T N S K L T L Q L A L R R S V N R E R K K T G T K M .................................................................................................................................................................................................................. ggcagacagccaagaaagaaaaagagctgtaactaaatcgaagtcagcctgttgatggagtttaaggggaaactatttttgccggcctcaatagcagaagtcggtttttatcttgtcccaaagaggaggttttgggttctatattatcttttcaaaacgttaaataagcataaacacgcagtttttgccccccgataatatgttgtttagcataaagtgattatatttgtggtgtgtttttcatggtattagattttaaggttaattggagagcgagacgtcgtgagacgtttcgctctcgtttttttgtaccggtctttatcggtcgtaacccttatctgttgcagcgacttttgccttttcaagaagaattccctgtaatcggttggaacctttgtcataagagagaaaataaaacaggcccccctttgtagcaaggaggacttgtctttcgaattgtttttatcgttagagcttcatcggagcaagggatgaagctctctttttgtctctttcagacttggatcatttt Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: + Score: 81 Start: 353 End: 382 ................................................................................................................................................................................................................................................................................................................................................................TTTGCCTTTTCAAGAAGAATTCCCTGTAAT...................................................................................................................................................... Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ ggcagacagccaagaaagaaaaagagctgtaactaaatcgaagtcagcctgttgatggagtttaaggggaaactatttttgccggcctcaatagcagaagtcggtttttatcttgtcccaaagaggaggttttgggttctatattatcttttcaaaacgttaaataagcataaacacgcagtttttgccccccgataatatgttgtttagcataaagtgattatatttgtggtgtgtttttcatggtattagattttaaggttaattggagagcgagacgtcgtgagacgtttcgctctcgtttttttgtaccggtctttatcggtcgtaacccttatctgttgcagcgacttttgccttttcaagaagaattccctgtaatcggttggaacctttgtcataagagagaaaataaaacaggcccccctttgtagcaaggaggacttgtctttcgaattgtttttatcgttagagcttcatcggagcaagggatgaagctctctttttgtctctttcagacttggatcatttt Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 70 HP_score: -2.6 Tail_Score: -5.1523 Start: 82 End: 104 Full_Region: GGGAAACTATTTTTG CCGGCCTC AATAGCA GAAGTCGG TTTTTATCTTGTCCC .................................................................................CCGGCCTCAATAGCAGAAGTCGG............................................................................................................................................................................................................................................................................................................................................................................................................................................ TransTerm Strand: + Conf: 56 HP_score: -4.3 Tail_Score: -3.77486 Start: 117 End: 136 Full_Region: CGGTTTTTATCTTGT CCCAAAG AGGAGG TTTTGGG TTCTATATTATCTTT ....................................................................................................................CCCAAAGAGGAGGTTTTGGG............................................................................................................................................................................................................................................................................................................................................................................................................ TransTerm Strand: - Conf: 59 HP_score: -4.0 Tail_Score: -4.00411 Start: 168 End: 188 Full_Region: acatattatcggggg gcaaaaac tgcgt gtttatgc ttatttaacgttttg .......................................................................................................................................................................gcaaaaactgcgtgtttatgc........................................................................................................................................................................................................................................................................................................................................................ TransTerm Strand: + Conf: 100 HP_score: -16.1 Tail_Score: -5.61596 Start: 268 End: 301 Full_Region: ATTTTAAGGTTAATT GGAGAGCGAGACGTC GTGA GACGTTTCGCTCTCG TTTTTTTGTACCGGT ...........................................................................................................................................................................................................................................................................GGAGAGCGAGACGTCGTGAGACGTTTCGCTCTCG....................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 100 HP_score: -19.6 Tail_Score: -3.95873 Start: 269 End: 300 Full_Region: TTTTAAGGTTAATTG GAGAGCGAGACGTC GTGA GACGTTTCGCTCTC GTTTTTTTGTACCGG ............................................................................................................................................................................................................................................................................GAGAGCGAGACGTCGTGAGACGTTTCGCTCTC........................................................................................................................................................................................................................................ TransTerm Strand: + Conf: 52 HP_score: -4.2 Tail_Score: -3.44353 Start: 418 End: 447 Full_Region: AGAGAGAAAATAAAA CAGGCCCCCCTT TGTAGC AAGGAGGACTTG TCTTTCGAATTGTTT .................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGCCCCCCTTTGTAGCAAGGAGGACTTG..................................................................................... TransTerm Strand: - Conf: 87 HP_score: -6.4 Tail_Score: -5.24647 Start: 418 End: 447 Full_Region: aaacaattcgaaaga caagtcctcctt gctaca aaggggggcctg ttttattttctctct .................................................................................................................................................................................................................................................................................................................................................................................................................................caagtcctccttgctacaaaggggggcctg..................................................................................... TransTerm Strand: + Conf: 83 HP_score: -6.4 Tail_Score: -5.14985 Start: 470 End: 502 Full_Region: AATTGTTTTTATCGT TAGAGCTTCATC GGAGCAAGG GATGAAGCTCTC TTTTTGTCTCTTTCA .....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGAGCTTCATCGGAGCAAGGGATGAAGCTCTC.............................. TransTerm Strand: + Conf: 85 HP_score: -9.0 Tail_Score: -4.18187 Start: 472 End: 500 Full_Region: TTGTTTTTATCGTTA GAGCTTCATC GGAGCAAGG GATGAAGCTC TCTTTTTGTCTCTTT .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTTCATCGGAGCAAGGGATGAAGCTC................................ Find igs database================================================ Query_seq: PG0557:PG0558|PG0557:PG0558:hypothetical protein:purine nucleoside phosphorylase:-><-:615068..615599 532 ggcagacagccaagaaagaaaaagagctgtaactaaatcgaagtcagcctgttgatggagtttaaggggaaactatttttgccggcctcaatagcagaagtcggtttttatcttgtcccaaagaggaggttttgggttctatattatcttttcaaaacgttaaataagcataaacacgcagtttttgccccccgataatatgttgtttagcataaagtgattatatttgtggtgtgtttttcatggtattagattttaaggttaattggagagcgagacgtcgtgagacgtttcgctctcgtttttttgtaccggtctttatcggtcgtaacccttatctgttgcagcgacttttgccttttcaagaagaattccctgtaatcggttggaacctttgtcataagagagaaaataaaacaggcccccctttgtagcaaggaggacttgtctttcgaattgtttttatcgttagagcttcatcggagcaagggatgaagctctctttttgtctctttcagacttggatcatttt Intra-Species Hit: Count: 1 Min: 1 Max: 532 Len: 532 Subject: NC_002950_PG0557_PG0558|hypothetical protein:purine nucleoside phosphorylase|POSITIVE:NEGATIVE|[615068,615599]|532 HSP 1 e-value: 0.0 bit: 1013.0 Len: 532 Query Start:1 Query End:532 Subject Strand: POSITIVE Subject Start: 1 Subject End: 532 ggcagacagccaagaaagaaaaagagctgtaactaaatcgaagtcagcctgttgatggagtttaaggggaaactatttttgccggcctcaatagcagaagtcggtttttatcttgtcccaaagaggaggttttgggttctatattatcttttcaaaacgttaaataagcataaacacgcagtttttgccccccgataatatgttgtttagcataaagtgattatatttgtggtgtgtttttcatggtattagattttaaggttaattggagagcgagacgtcgtgagacgtttcgctctcgnnnnnnngtaccggtctttatcggtcgtaacccttatctgttgcagcgacttttgccttttcaagaagaattccctgtaatcggttggaacctttgtcataagagagaaaataaaacaggcccccctttgtagcaaggaggacttgtctttcgaattgtttttatcgttagagcttcatcggagcaagggatgaagctctctttttgtctctttcagacttggatcatttt ggcagacagccaagaaagaaaaagagctgtaactaaatcgaagtcagcctgttgatggagtttaaggggaaactatttttgccggcctcaatagcagaagtcggtttttatcttgtcccaaagaggaggttttgggttctatattatcttttcaaaacgttaaataagcataaacacgcagtttttgccccccgataatatgttgtttagcataaagtgattatatttgtggtgtgtttttcatggtattagattttaaggttaattggagagcgagacgtcgtgagacgtttcgctctcgtttttttgtaccggtctttatcggtcgtaacccttatctgttgcagcgacttttgccttttcaagaagaattccctgtaatcggttggaacctttgtcataagagagaaaataaaacaggcccccctttgtagcaaggaggacttgtctttcgaattgtttttatcgttagagcttcatcggagcaagggatgaagctctctttttgtctctttcagacttggatcatttt Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ GGCAGACAGCCAAGAAAGAAAAAGAGCUGUAACUAAAUCGAAGUCAGCCUGUUGAUGGAGUUUAAGGGGAAACUAUUUUUGCCGGCCUCAAUAGCAGAAGUCGGUUUUUAUCUUGUCCCAAAGAGGAGGUUUUGGGUUCUAUAUUAUCUUUUCAAAACGUUAAAUAAGCAUAAACACGCAGUUUUUGCCCCCCGAUAAUAUGUUGUUUAGCAUAAAGUGAUUAUAUUUGUGGUGUGUUUUUCAUGGUAUUAGAUUUUAAGGUUAAUUGGAGAGCGAGACGUCGUGAGACGUUUCGCUCUCGUUUUUUUGUACCGGUCUUUAUCGGUCGUAACCCUUAUCUGUUGCAGCGACUUUUGCCUUUUCAAGAAGAAUUCCCUGUAAUCGGUUGGAACCUUUGUCAUAAGAGAGAAAAUAAAACAGGCCCCCCUUUGUAGCAAGGAGGACUUGUCUUUCGAAUUGUUUUUAUCGUUAGAGCUUCAUCGGAGCAAGGGAUGAAGCUCUCUUUUUGUCUCUUUCAGACUUGGAUCAUUUU .....((((((............).))))).........((..((((((.((((..(((((((...((((..........((((((.((.......)).))))))..........))))...((((((((...(((((.(((((((((....(.....)........(((.((((.....)))).))).....))))))))).((...((((((..(..(......)..)..))))))...))..(((.(((((.....(((((....((((((((((((((....))))))))))))))........(.((((((....))))))).)))))...))))).)))...)))))..)))))))).....)))))))...)))).))))))..((...(((..((((((.((((....(((((.((.((((......)))).)).)))))......................(((((((((((.........)))))))))))..)))).))))))...)))..)).))..... (-153.35) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AAAAUGAUCCAAGUCUGAAAGAGACAAAAAGAGAGCUUCAUCCCUUGCUCCGAUGAAGCUCUAACGAUAAAAACAAUUCGAAAGACAAGUCCUCCUUGCUACAAAGGGGGGCCUGUUUUAUUUUCUCUCUUAUGACAAAGGUUCCAACCGAUUACAGGGAAUUCUUCUUGAAAAGGCAAAAGUCGCUGCAACAGAUAAGGGUUACGACCGAUAAAGACCGGUACAAAAAAACGAGAGCGAAACGUCUCACGACGUCUCGCUCUCCAAUUAACCUUAAAAUCUAAUACCAUGAAAAACACACCACAAAUAUAAUCACUUUAUGCUAAACAACAUAUUAUCGGGGGGCAAAAACUGCGUGUUUAUGCUUAUUUAACGUUUUGAAAAGAUAAUAUAGAACCCAAAACCUCCUCUUUGGGACAAGAUAAAAACCGACUUCUGCUAUUGAGGCCGGCAAAAAUAGUUUCCCCUUAAACUCCAUCAACAGGCUGACUUCGAUUUAGUUACAGCUCUUUUUCUUUCUUGGCUGUCUGCC ....(((....((((((.((((((.((((..(((((((((((.........)))))))))))..(((..........))).((((((.(((((((((......))))))))).)))))).)))).)))))).(((....(((..(((.......((((((....))))))....((((.((((((.......((((.(((((((..((((........))))..........((((((((.(((((....))))).))))))))....)))))))...)))).............................(((.................((((((((...(((((.((((.....)))).))))).(((((....)))))..))))))))....((((((........))))))....)))......)))))).)))).)))..))).........(((((......)))))...))).))))))....))).....((.((((((.............))))))..)). (-138.42) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 379 520 473 63 15 NC_002950:PG0629|5end_inorganic_polyphosphate/ATP-NAD_kinase_683364..683594_NEGATIVE 372 359 314 196 150 NC_002950:PG1760|5end_ABC_transporter,_ATP-binding_protein_1846507..1846737_POSITIVE 365 518 472 123 71 NC_002950:PG0926|5end_hypothetical_protein_984634..984864_NEGATIVE 360 73 37 153 110 NC_002950:PG0502|5end_SsrA-binding_protein_541459..541689_POSITIVE 359 318 274 188 144 NC_002950:PG1589|5end_dihydropteroate_synthase_1667438..1667668_NEGATIVE 359 119 82 97 66 NC_002950:PG1252|5end_hypothetical_protein_1329584..1329814_NEGATIVE 359 314 271 217 170 NC_002950:PG0268|5end_tRNA_(5-methylaminomethyl-2-thiouridylate)-methyltransferase_300898..301128_POSITIVE 354 315 274 197 163 NC_002950:PG0657|5end_Maf-like_protein_707782..708012_NEGATIVE 350 316 272 225 176 NC_002950:PG1160|5end_L-threonine-O-3-phosphate_decarboxylase,_putative_1239988..1240218_NEGATIVE 347 319 271 63 1 NC_002950:PG1654|5end_D-alanyl-D-alanine_dipeptidase_1736458..1736688_POSITIVE 347 325 281 180 124 NC_002950:PG0329|5end_formiminotransferase-cyclodeaminase-related_protein_364429..364659_NEGATIVE 344 86 41 170 112 NC_002950:PG1497|5end_DNA-binding_protein,_histone-like_family_1574085..1574315_POSITIVE 344 360 312 189 126 NC_002950:PG1051|5end_hypothetical_protein_1118210..1118440_POSITIVE 343 320 271 176 121 NC_002950:PG2154|5end_hypothetical_protein_2260945..2261175_NEGATIVE 341 318 271 73 23 NC_002950:PG0746|5end_sensor_histidine_kinase_793903..794133_NEGATIVE 338 527 481 171 121 NC_002950:PG1874|5end_hypothetical_protein_1969660..1969890_NEGATIVE 335 358 315 227 189 NC_002950:PG1124|5end_ATP:cob(I)alamin_adenosyltransferase,_putative_1201036..1201266_NEGATIVE 335 357 313 131 76 NC_002950:PG0362|5end_hypothetical_protein_395301..395531_POSITIVE 334 315 274 54 13 NC_002950:PG1593|5end_shikimate_kinase_1671503..1671733_POSITIVE 331 330 283 209 166 NC_002950:PG0976|5end_phosphoribosylaminoimidazole-succinocarboxamide_synthase_1038326..1038556_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 453 270 227 45 1 NC_002950:PG1222|3end_hypothetical_protein_1299075..1299225_NEGATIVE 405 130 82 120 68 NC_002950:PG0431|3end_hypothetical_protein_469174..469324_POSITIVE 365 518 472 123 71 NC_002950:PG0927|3end_conserved_hypothetical_protein_TIGR00150_984634..984784_NEGATIVE 360 73 37 120 77 NC_002950:PG0501|3end_hypothetical_protein_541506..541656_POSITIVE 359 119 82 84 53 NC_002950:PG1253|3end_DNA_ligase,_NAD-dependent_1329597..1329747_NEGATIVE 347 325 281 131 75 NC_002950:PG0330|3end_DNA-binding_protein,_histone-like_family_364478..364628_NEGATIVE 344 360 312 147 84 NC_002950:PG1050|3end_hypothetical_protein_1118248..1118398_POSITIVE 343 320 271 149 94 NC_002950:PG2155|3end_lipoprotein,_putative_2260972..2261122_NEGATIVE 341 318 271 76 26 NC_002950:PG0747|3end_sigma-54_dependent_DNA-binding_response_regulator_793900..794050_NEGATIVE 339 360 312 99 49 NC_002950:PG1942|3end_30S_ribosomal_protein_S12_2027946..2028096_NEGATIVE 336 358 311 46 6 NC_002950:PG1105|3end_RNA_polymerase_sigma-54_factor_1175716..1175866_NEGATIVE 331 318 273 128 83 NC_002950:PG0495|3end_hypothetical_protein_536936..537086_POSITIVE 329 510 467 83 30 NC_002950:PG0143|3end_hydrolase,_carbon-nitrogen_family_165747..165897_NEGATIVE 328 138 93 92 50 NC_002950:PG0016|3end_sigma-54_dependent_DNA-binding_response_regulator_18376..18526_POSITIVE 327 516 471 68 31 NC_002950:PG0637|3end_thiamine_monophosphate_kinase_689064..689214_NEGATIVE 324 355 312 67 24 NC_002950:PG2212|3end_hypothetical_protein_2324483..2324633_NEGATIVE 323 315 274 67 17 NC_002950:PG1782|3end_hypothetical_protein_1871961..1872111_POSITIVE 323 360 311 77 14 NC_002950:PG0443|3end_hemagglutinin-related_protein_483147..483297_POSITIVE 322 328 292 100 58 NC_002950:PG1738|3end_hypothetical_protein_1824097..1824247_NEGATIVE 319 107 68 108 70 NC_002950:PG1079|3end_enoyl-CoA_hydratase/isomerase_family_protein_1147399..1147549_POSITIVE