Origin IGS: aattaaaacagattaaaaagttatggccgcaatatcgcggcgcacaaaagtgtatcgttttttctatacggacaatagcaaagaccttcattgttgaaaagttttccatatttatttcgtaattcattgtgaatgagggcattgtgttttgcactattcggctaaaattttccaaaaacttttctttttagtcggcctgaatcgggctaaaaaaatcggtctgatcaaactatatagtttggtctcaccaaagtatatagtttggttgaaccaaagtatatagtttagtctcaccaaactatatagtttagttttgccaaagtatatagtttgatttcggtgttgttttagcatggtttcatcagccccaagagaagcctccgcccctcatccgaaacgctcggaacatctcccccaatcctcatcctataccttatatatatagtgtatcgaaatatgtgctccgatagaggtcgcctttcctttcggccccagcttctccgatacatcttacagccgctctccaagaaaatgattttatattcccggtgctgtaattaggagtcaatttgttcttaatttagcatctgtacagtgagaatgattaagatatataagtctaactatttctcatttttgtgatttttgtatttttgcgagactagaatttctttaaacttgaagacgtcatgggcaaattttctctgttgaataattttaaagcatatattgtgagtgcttttaaatcgatttgtaatataatcaaaagtgtttttgggggaaagaagaataatggactaatacctcgatctgaatgtcttttgaataaagcttcttgttctcatgaagatatgactcctcagaaccaaaaagttctaatatctagtattgagcttaaaaatagtgaggcttctgtagtgtttaaggctgctgatgagaatgatttgaaaaatctttctaaattagatttaagctcaaagcaaaaagaatttttttagggactttttctagtataattggtggagcttcaaatgtagcaattggatcatttgctgcaaatggactttttaaagctacggtaaatccaagtact .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 agtacttggatttaccgtagctttaaaaagtccatttgcagcaaatgatccaattgctacatttgaagctccaccaattatactagaaaaagtccctaaaaaaattctttttgctttgagcttaaatctaatttagaaagatttttcaaatcattctcatcagcagccttaaacactacagaagcctcactatttttaagctcaatactagatattagaactttttggttctgaggagtcatatcttcatgagaacaagaagctttattcaaaagacattcagatcgaggtattagtccattattcttctttcccccaaaaacacttttgattatattacaaatcgatttaaaagcactcacaatatatgctttaaaattattcaacagagaaaatttgcccatgacgtcttcaagtttaaagaaattctagtctcgcaaaaatacaaaaatcacaaaaatgagaaatagttagacttatatatcttaatcattctcactgtacagatgctaaattaagaacaaattgactcctaattacagcaccgggaatataaaatcattttcttggagagcggctgtaagatgtatcggagaagctggggccgaaaggaaaggcgacctctatcggagcacatatttcgatacactatatatataaggtataggatgaggattgggggagatgttccgagcgtttcggatgaggggcggaggcttctcttggggctgatgaaaccatgctaaaacaacaccgaaatcaaactatatactttggcaaaactaaactatatagtttggtgagactaaactatatactttggttcaaccaaactatatactttggtgagaccaaactatatagtttgatcagaccgatttttttagcccgattcaggccgactaaaaagaaaagtttttggaaaattttagccgaatagtgcaaaacacaatgccctcattcacaatgaattacgaaataaatatggaaaacttttcaacaatgaaggtctttgctattgtccgtatagaaaaaacgatacacttttgtgcgccgcgatattgcggccataactttttaatctgttttaatt Mask Tandem Repeat Region ================================================ aattaaaacagattaaaaagttatggccgcaatatcgcggcgcacaaaagtgtatcgttttttctatacggacaatagcaaagaccttcattgttgaaaagttttccatatttatttcgtaattcattgtgaatgagggcattgtgttttgcactattcggctaaaattttccaaaaacttttctttttagtcggcctgaatcgggctaaaaaaatcggtctgatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatttcggtgttgttttagcatggtttcatcagccccaagagaagcctccgcccctcatccgaaacgctcggaacatctcccccaatcctcatcctataccttatatatatagtgtatcgaaatatgtgctccgatagaggtcgcctttcctttcggccccagcttctccgatacatcttacagccgctctccaagaaaatgattttatattcccggtgctgtaattaggagtcaatttgttcttaatttagcatctgtacagtgagaatgattaagatatataagtctaactatttctcatttttgtgatttttgtatttttgcgagactagaatttctttaaacttgaagacgtcatgggcaaattttctctgttgaataattttaaagcatatattgtgagtgcttttaaatcgatttgtaatataatcaaaagtgtttttgggggaaagaagaataatggactaatacctcgatctgaatgtcttttgaataaagcttcttgttctcatgaagatatgactcctcagaaccaaaaagttctaatatctagtattgagcttaaaaatagtgaggcttctgtagtgtttaaggctgctgatgagaatgatttgaaaaatctttctaaattagatttaagctcaaagcaaaaagaatttttttagggactttttctagtataattggtggagcttcaaatgtagcaattggatcatttgctgcaaatggactttttaaagctacggtaaatccaagtact Find is-nt database================================================ Query_seq: PG0555:PG0556|PG0555:PG0556:DNA-binding protein, histone-like family:hypothetical protein:<-->:612325..613417 1093 aattaaaacagattaaaaagttatggccgcaatatcgcggcgcacaaaagtgtatcgttttttctatacggacaatagcaaagaccttcattgttgaaaagttttccatatttatttcgtaattcattgtgaatgagggcattgtgttttgcactattcggctaaaattttccaaaaacttttctttttagtcggcctgaatcgggctaaaaaaatcggtctgatcaaactatatagtttggtctcaccaaagtatatagtttggttgaaccaaagtatatagtttagtctcaccaaactatatagtttagttttgccaaagtatatagtttgatttcggtgttgttttagcatggtttcatcagccccaagagaagcctccgcccctcatccgaaacgctcggaacatctcccccaatcctcatcctataccttatatatatagtgtatcgaaatatgtgctccgatagaggtcgcctttcctttcggccccagcttctccgatacatcttacagccgctctccaagaaaatgattttatattcccggtgctgtaattaggagtcaatttgttcttaatttagcatctgtacagtgagaatgattaagatatataagtctaactatttctcatttttgtgatttttgtatttttgcgagactagaatttctttaaacttgaagacgtcatgggcaaattttctctgttgaataattttaaagcatatattgtgagtgcttttaaatcgatttgtaatataatcaaaagtgtttttgggggaaagaagaataatggactaatacctcgatctgaatgtcttttgaataaagcttcttgttctcatgaagatatgactcctcagaaccaaaaagttctaatatctagtattgagcttaaaaatagtgaggcttctgtagtgtttaaggctgctgatgagaatgatttgaaaaatctttctaaattagatttaagctcaaagcaaaaagaatttttttagggactttttctagtataattggtggagcttcaaatgtagcaattggatcatttgctgcaaatggactttttaaagctacggtaaatccaagtact Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PG0555:PG0556|PG0555:PG0556:DNA-binding protein, histone-like family:hypothetical protein:<-->:612325..613417 1093 aattaaaacagattaaaaagttatggccgcaatatcgcggcgcacaaaagtgtatcgttttttctatacggacaatagcaaagaccttcattgttgaaaagttttccatatttatttcgtaattcattgtgaatgagggcattgtgttttgcactattcggctaaaattttccaaaaacttttctttttagtcggcctgaatcgggctaaaaaaatcggtctgatcaaactatatagtttggtctcaccaaagtatatagtttggttgaaccaaagtatatagtttagtctcaccaaactatatagtttagttttgccaaagtatatagtttgatttcggtgttgttttagcatggtttcatcagccccaagagaagcctccgcccctcatccgaaacgctcggaacatctcccccaatcctcatcctataccttatatatatagtgtatcgaaatatgtgctccgatagaggtcgcctttcctttcggccccagcttctccgatacatcttacagccgctctccaagaaaatgattttatattcccggtgctgtaattaggagtcaatttgttcttaatttagcatctgtacagtgagaatgattaagatatataagtctaactatttctcatttttgtgatttttgtatttttgcgagactagaatttctttaaacttgaagacgtcatgggcaaattttctctgttgaataattttaaagcatatattgtgagtgcttttaaatcgatttgtaatataatcaaaagtgtttttgggggaaagaagaataatggactaatacctcgatctgaatgtcttttgaataaagcttcttgttctcatgaagatatgactcctcagaaccaaaaagttctaatatctagtattgagcttaaaaatagtgaggcttctgtagtgtttaaggctgctgatgagaatgatttgaaaaatctttctaaattagatttaagctcaaagcaaaaagaatttttttagggactttttctagtataattggtggagcttcaaatgtagcaattggatcatttgctgcaaatggactttttaaagctacggtaaatccaagtact Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PG0555:PG0556|PG0555:PG0556:DNA-binding protein, histone-like family:hypothetical protein:<-->:612325..613417 1093 aattaaaacagattaaaaagttatggccgcaatatcgcggcgcacaaaagtgtatcgttttttctatacggacaatagcaaagaccttcattgttgaaaagttttccatatttatttcgtaattcattgtgaatgagggcattgtgttttgcactattcggctaaaattttccaaaaacttttctttttagtcggcctgaatcgggctaaaaaaatcggtctgatcaaactatatagtttggtctcaccaaagtatatagtttggttgaaccaaagtatatagtttagtctcaccaaactatatagtttagttttgccaaagtatatagtttgatttcggtgttgttttagcatggtttcatcagccccaagagaagcctccgcccctcatccgaaacgctcggaacatctcccccaatcctcatcctataccttatatatatagtgtatcgaaatatgtgctccgatagaggtcgcctttcctttcggccccagcttctccgatacatcttacagccgctctccaagaaaatgattttatattcccggtgctgtaattaggagtcaatttgttcttaatttagcatctgtacagtgagaatgattaagatatataagtctaactatttctcatttttgtgatttttgtatttttgcgagactagaatttctttaaacttgaagacgtcatgggcaaattttctctgttgaataattttaaagcatatattgtgagtgcttttaaatcgatttgtaatataatcaaaagtgtttttgggggaaagaagaataatggactaatacctcgatctgaatgtcttttgaataaagcttcttgttctcatgaagatatgactcctcagaaccaaaaagttctaatatctagtattgagcttaaaaatagtgaggcttctgtagtgtttaaggctgctgatgagaatgatttgaaaaatctttctaaattagatttaagctcaaagcaaaaagaatttttttagggactttttctagtataattggtggagcttcaaatgtagcaattggatcatttgctgcaaatggactttttaaagctacggtaaatccaagtact Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 aattaaaacagattaaaaagttatggccgcaatatcgcggcgcacaaaagtgtatcgttttttctatacggacaatagcaaagaccttcattgttgaaaagttttccatatttatttcgtaattcattgtgaatgagggcattgtgttttgcactattcggctaaaattttccaaaaacttttctttttagtcggcctgaatcgggctaaaaaaatcggtctgatcaaactatatagtttggtctcaccaaagtatatagtttggttgaaccaaagtatatagtttagtctcaccaaactatatagtttagttttgccaaagtatatagtttgatttcggtgttgttttagcatggtttcatcagccccaagagaagcctccgcccctcatccgaaacgctcggaacatctcccccaatcctcatcctataccttatatatatagtgtatcgaaatatgtgctccgatagaggtcgcctttcctttcggccccagcttctccgatacatcttacagccgctctccaagaaaatgattttatattcccggtgctgtaattaggagtcaatttgttcttaatttagcatctgtacagtgagaatgattaagatatataagtctaactatttctcatttttgtgatttttgtatttttgcgagactagaatttctttaaacttgaagacgtcatgggcaaattttctctgttgaataattttaaagcatatattgtgagtgcttttaaatcgatttgtaatataatcaaaagtgtttttgggggaaagaagaataatggactaatacctcgatctgaatgtcttttgaataaagcttcttgttctcatgaagatatgactcctcagaaccaaaaagttctaatatctagtattgagcttaaaaatagtgaggcttctgtagtgtttaaggctgctgatgagaatgatttgaaaaatctttctaaattagatttaagctcaaagcaaaaagaatttttttagggactttttctagtataattggtggagcttcaaatgtagcaattggatcatttgctgcaaatggactttttaaagctacggtaaatccaagtact Predict ORF larger than 30AA ================================================ Protein_Len: 36 Strand: + Start: 12 End: 119 ........... M K K L W P Q Y R G A Q K C I V F S I R T I A K T F I V E K F S I F I S .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 44 Strand: + Start: 149 End: 280 .................................................................................................................................................... M H Y S A K I F Q K L F F L V G L N R A K K I G L I K L Y S L V S P K Y I V W L N Q S I ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 30 Strand: + Start: 353 End: 442 ................................................................................................................................................................................................................................................................................................................................................................ M V S S A P R E A S A P H P K R S E H L P Q S S S Y T L Y I ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 361 End: 558 ........................................................................................................................................................................................................................................................................................................................................................................ M S P K R S L R P S S E T L G T S P P I L I L Y L I Y I V Y R N M C S D R G R L S F R P Q L L R Y I L Q P L S K K M I L ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 690 End: 995 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M G K F S L L N N F K A Y I V S A F K S I C N I I K S V F G G K K N N G L I P R S E C L L N K A S C S H E D M T P Q N Q .................................................................................................. Protein_Len: 44 Strand: + Start: 962 End: 1093 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M R F K L K A K R I F L G T F S S I I G G A S N V A I G S F A A N G L F K A T V N P S T Protein_Len: 39 Strand: - Start: 766 End: 882 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. F H K Q P F S S Y H V L V E I Q I D K S Y L K K N E H L Y S E E S G F L E L M ................................................................................................................................................................................................................... Protein_Len: 46 Strand: - Start: 665 End: 802 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ F K K L S S S T M P L N E R N F L K L A Y I T L A K L D I Q L I I L L T K P P F F F L P S M ................................................................................................................................................................................................................................................................................................... Protein_Len: 56 Strand: - Start: 627 End: 794 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. K E N K H N K Y K Q S V L I E K F K F V D H A F K R Q Q I I K F C I N H T S K F R N T I Y D F T N K P S L L I M ........................................................................................................................................................................................................................................................................................................... Protein_Len: 48 Strand: - Start: 437 End: 580 .................................................................................................................................................................................................................................................................................................................................................................................................................................................... I Y L T D F Y T S R Y L D G K R E A G A E G I C R V A A R W S F S K I N G T S Y N P T L K N K M ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 60 Strand: - Start: 351 End: 536 .............................................................................................................................................................................................................................................................................................................................................................. K M L G L L L R R G E D S V S P V D G G I R M R Y R I Y I T Y R F I H E S L P R R E K R G W S R R Y M K C G S E L F I M ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 60 Strand: - Start: 157 End: 354 ............................................................................................................................................................ F S K K K T P R F R A L F I P R I L S Y L K T E G F Y I T Q N F W L I Y N L R V L S Y L K T K G F Y I T Q N R H Q K L M ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 37 Strand: - Start: 24 End: 134 ....................... P R L I A A C L L T D N K R Y P C Y C L G E N N F L K G Y K N R L E N H M ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 58 Strand: - Start: 2 End: 175 . N F C I L F N H G C Y R P A C F H I T K E I R V I A F V K M T S F N E M N I E Y N M T F S P M T N Q V I R S F N E M ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... aattaaaacagattaaaaagttatggccgcaatatcgcggcgcacaaaagtgtatcgttttttctatacggacaatagcaaagaccttcattgttgaaaagttttccatatttatttcgtaattcattgtgaatgagggcattgtgttttgcactattcggctaaaattttccaaaaacttttctttttagtcggcctgaatcgggctaaaaaaatcggtctgatcaaactatatagtttggtctcaccaaagtatatagtttggttgaaccaaagtatatagtttagtctcaccaaactatatagtttagttttgccaaagtatatagtttgatttcggtgttgttttagcatggtttcatcagccccaagagaagcctccgcccctcatccgaaacgctcggaacatctcccccaatcctcatcctataccttatatatatagtgtatcgaaatatgtgctccgatagaggtcgcctttcctttcggccccagcttctccgatacatcttacagccgctctccaagaaaatgattttatattcccggtgctgtaattaggagtcaatttgttcttaatttagcatctgtacagtgagaatgattaagatatataagtctaactatttctcatttttgtgatttttgtatttttgcgagactagaatttctttaaacttgaagacgtcatgggcaaattttctctgttgaataattttaaagcatatattgtgagtgcttttaaatcgatttgtaatataatcaaaagtgtttttgggggaaagaagaataatggactaatacctcgatctgaatgtcttttgaataaagcttcttgttctcatgaagatatgactcctcagaaccaaaaagttctaatatctagtattgagcttaaaaatagtgaggcttctgtagtgtttaaggctgctgatgagaatgatttgaaaaatctttctaaattagatttaagctcaaagcaaaaagaatttttttagggactttttctagtataattggtggagcttcaaatgtagcaattggatcatttgctgcaaatggactttttaaagctacggtaaatccaagtact Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ aattaaaacagattaaaaagttatggccgcaatatcgcggcgcacaaaagtgtatcgttttttctatacggacaatagcaaagaccttcattgttgaaaagttttccatatttatttcgtaattcattgtgaatgagggcattgtgttttgcactattcggctaaaattttccaaaaacttttctttttagtcggcctgaatcgggctaaaaaaatcggtctgatcaaactatatagtttggtctcaccaaagtatatagtttggttgaaccaaagtatatagtttagtctcaccaaactatatagtttagttttgccaaagtatatagtttgatttcggtgttgttttagcatggtttcatcagccccaagagaagcctccgcccctcatccgaaacgctcggaacatctcccccaatcctcatcctataccttatatatatagtgtatcgaaatatgtgctccgatagaggtcgcctttcctttcggccccagcttctccgatacatcttacagccgctctccaagaaaatgattttatattcccggtgctgtaattaggagtcaatttgttcttaatttagcatctgtacagtgagaatgattaagatatataagtctaactatttctcatttttgtgatttttgtatttttgcgagactagaatttctttaaacttgaagacgtcatgggcaaattttctctgttgaataattttaaagcatatattgtgagtgcttttaaatcgatttgtaatataatcaaaagtgtttttgggggaaagaagaataatggactaatacctcgatctgaatgtcttttgaataaagcttcttgttctcatgaagatatgactcctcagaaccaaaaagttctaatatctagtattgagcttaaaaatagtgaggcttctgtagtgtttaaggctgctgatgagaatgatttgaaaaatctttctaaattagatttaagctcaaagcaaaaagaatttttttagggactttttctagtataattggtggagcttcaaatgtagcaattggatcatttgctgcaaatggactttttaaagctacggtaaatccaagtact Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 100 HP_score: -10.6 Tail_Score: -5.40474 Start: 216 End: 274 Full_Region: actaaactatatact ttggttcaaccaaactatatactttggt gag accaaactatatagtttgatcagaccga tttttttagcccgat .......................................................................................................................................................................................................................ttggttcaaccaaactatatactttggtgagaccaaactatatagtttgatcagaccga................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 90 HP_score: -11.4 Tail_Score: -3.72695 Start: 230 End: 260 Full_Region: tttggttcaaccaaa ctatatactttggt gag accaaactatatag tttgatcagaccgat .....................................................................................................................................................................................................................................ctatatactttggtgagaccaaactatatag................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. TransTerm Strand: + Conf: 93 HP_score: -11.4 Tail_Score: -3.90112 Start: 230 End: 260 Full_Region: ATCGGTCTGATCAAA CTATATAGTTTGGT CTC ACCAAAGTATATAG TTTGGTTGAACCAAA .....................................................................................................................................................................................................................................CTATATAGTTTGGTCTCACCAAAGTATATAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. TransTerm Strand: + Conf: 73 HP_score: -7.7 Tail_Score: -3.83026 Start: 230 End: 283 Full_Region: ATCGGTCTGATCAAA CTATATAGTTTGGTCTCACCAAAGT ATAT AGTTTGGTTGAACCAAAGTATATAG TTTAGTCTCACCAAA .....................................................................................................................................................................................................................................CTATATAGTTTGGTCTCACCAAAGTATATAGTTTGGTTGAACCAAAGTATATAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 73 HP_score: -9.1 Tail_Score: -2.83403 Start: 254 End: 282 Full_Region: ttggtgagactaaac tatatactttggt tca accaaactatata ctttggtgagaccaa .............................................................................................................................................................................................................................................................tatatactttggttcaaccaaactatata........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 73 HP_score: -9.1 Tail_Score: -2.89602 Start: 254 End: 282 Full_Region: TTGGTCTCACCAAAG TATATAGTTTGGT TGA ACCAAAGTATATA GTTTAGTCTCACCAA .............................................................................................................................................................................................................................................................TATATAGTTTGGTTGAACCAAAGTATATA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 75 HP_score: -7.1 Tail_Score: -4.09243 Start: 271 End: 311 Full_Region: TATAGTTTGGTTGAA CCAAAGTATATAGTTTAGT CTC ACCAAACTATATAGTTTAG TTTTGCCAAAGTATA ..............................................................................................................................................................................................................................................................................CCAAAGTATATAGTTTAGTCTCACCAAACTATATAGTTTAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. TransTerm Strand: - Conf: 76 HP_score: -7.8 Tail_Score: -3.90112 Start: 276 End: 306 Full_Region: tttggcaaaactaaa ctatatagtttggt gag actaaactatatac tttggttcaaccaaa ...................................................................................................................................................................................................................................................................................ctatatagtttggtgagactaaactatatac................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 83 HP_score: -11.3 Tail_Score: -2.93853 Start: 277 End: 305 Full_Region: ttggcaaaactaaac tatatagtttggt gag actaaactatata ctttggttcaaccaa ....................................................................................................................................................................................................................................................................................tatatagtttggtgagactaaactatata.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 74 HP_score: -9.1 Tail_Score: -3.11359 Start: 277 End: 305 Full_Region: TTGGTTGAACCAAAG TATATAGTTTAGT CTC ACCAAACTATATA GTTTAGTTTTGCCAA ....................................................................................................................................................................................................................................................................................TATATAGTTTAGTCTCACCAAACTATATA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 74 HP_score: -9.5 Tail_Score: -3.02166 Start: 279 End: 303 Full_Region: ggcaaaactaaacta tatagtttggt gag actaaactata tactttggttcaacc ......................................................................................................................................................................................................................................................................................tatagtttggtgagactaaactata...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 59 HP_score: -4.9 Tail_Score: -3.73775 Start: 299 End: 329 Full_Region: aacaccgaaatcaaa ctatatactttgg caaaa ctaaactatatag tttggtgagactaaa ..........................................................................................................................................................................................................................................................................................................ctatatactttggcaaaactaaactatatag............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ TransTerm Strand: + Conf: 40 HP_score: -2.4 Tail_Score: -2.72954 Start: 863 End: 876 Full_Region: AGATATGACTCCTCA GAAC CAAAAA GTTC TAATATCTAGTATTG ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACCAAAAAGTTC......................................................................................................................................................................................................................... Find igs database================================================ Query_seq: PG0555:PG0556|PG0555:PG0556:DNA-binding protein, histone-like family:hypothetical protein:<-->:612325..613417 1093 aattaaaacagattaaaaagttatggccgcaatatcgcggcgcacaaaagtgtatcgttttttctatacggacaatagcaaagaccttcattgttgaaaagttttccatatttatttcgtaattcattgtgaatgagggcattgtgttttgcactattcggctaaaattttccaaaaacttttctttttagtcggcctgaatcgggctaaaaaaatcggtctgatcaaactatatagtttggtctcaccaaagtatatagtttggttgaaccaaagtatatagtttagtctcaccaaactatatagtttagttttgccaaagtatatagtttgatttcggtgttgttttagcatggtttcatcagccccaagagaagcctccgcccctcatccgaaacgctcggaacatctcccccaatcctcatcctataccttatatatatagtgtatcgaaatatgtgctccgatagaggtcgcctttcctttcggccccagcttctccgatacatcttacagccgctctccaagaaaatgattttatattcccggtgctgtaattaggagtcaatttgttcttaatttagcatctgtacagtgagaatgattaagatatataagtctaactatttctcatttttgtgatttttgtatttttgcgagactagaatttctttaaacttgaagacgtcatgggcaaattttctctgttgaataattttaaagcatatattgtgagtgcttttaaatcgatttgtaatataatcaaaagtgtttttgggggaaagaagaataatggactaatacctcgatctgaatgtcttttgaataaagcttcttgttctcatgaagatatgactcctcagaaccaaaaagttctaatatctagtattgagcttaaaaatagtgaggcttctgtagtgtttaaggctgctgatgagaatgatttgaaaaatctttctaaattagatttaagctcaaagcaaaaagaatttttttagggactttttctagtataattggtggagcttcaaatgtagcaattggatcatttgctgcaaatggactttttaaagctacggtaaatccaagtact Intra-Species Hit: Count: 4 Min: 1 Max: 1093 Len: 1093 Subject: NC_002950_PG0555_PG0556|DNA-binding protein, histone-like family:hypothetical protein|NEGATIVE:POSITIVE|[612325,613417]|1093 HSP 1 e-value: 0.0 bit: 1213.0 Len: 633 Query Start:1 Query End:633 Subject Strand: POSITIVE Subject Start: 1 Subject End: 633 aattaaaacagattaaaaagttatggccgcaatatcgcggcgcacaaaagtgtatcgttttttctatacggacaatagcaaagaccttcattgttgaaaagttttccatatttatttcgtaattcattgtgaatgagggcattgtgttttgcactattcggctaaaattttccaaaaacttttctttttagtcggcctgaatcgggctnnnnnnntcggtctgatcaaactatatagtttggtctcaccaaagtatatagtttggttgaaccaaagtatatagtttagtctcaccaaactatatagtttagttttgccaaagtatatagtttgatttcggtgttgttttagcatggtttcatcagccccaagagaagcctccgcccctcatccgaaacgctcggaacatctcccccaatcctcatcctataccttatatatatagtgtatcgaaatatgtgctccgatagaggtcgcctttcctttcggccccagcttctccgatacatcttacagccgctctccaagaaaatgattttatattcccggtgctgtaattaggagtcaatttgttcttaatttagcatctgtacagtgagaatgattaagatatataagtctaactatttctca............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ aattaaaacagattaaaaagttatggccgcaatatcgcggcgcacaaaagtgtatcgttttttctatacggacaatagcaaagaccttcattgttgaaaagttttccatatttatttcgtaattcattgtgaatgagggcattgtgttttgcactattcggctaaaattttccaaaaacttttctttttagtcggcctgaatcgggctaaaaaaatcggtctgatcaaactatatagtttggtctcaccaaagtatatagtttggttgaaccaaagtatatagtttagtctcaccaaactatatagtttagttttgccaaagtatatagtttgatttcggtgttgttttagcatggtttcatcagccccaagagaagcctccgcccctcatccgaaacgctcggaacatctcccccaatcctcatcctataccttatatatatagtgtatcgaaatatgtgctccgatagaggtcgcctttcctttcggccccagcttctccgatacatcttacagccgctctccaagaaaatgattttatattcccggtgctgtaattaggagtcaatttgttcttaatttagcatctgtacagtgagaatgattaagatatataagtctaactatttctca............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ HSP 2 e-value: 0.0 bit: 827.0 Len: 438 Query Start:656 Query End:1093 Subject Strand: POSITIVE Subject Start: 656 Subject End: 1093 ...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gcgagactagaatttctttaaacttgaagacgtcatgggcaaattttctctgttgaataattttaaagcatatattgtgagtgcttttaaatcgatttgtaatataatcaaaagtgtttttgggggaaagaagaataatggactaatacctcgatctgaatgtcttttgaataaagcttcttgttctcatgaagatatgactcctcagaaccaaaaagttctaatatctagtattgagcttaaaaatagtgaggcttctgtagtgtttaaggctgctgatgagaatgatttgaaaaatctttctaaattagatttaagctcaaagcaaaaagaannnnnnnagggactttttctagtataattggtggagcttcaaatgtagcaattggatcatttgctgcaaatggactttttaaagctacggtaaatccaagtact ...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gcgagactagaatttctttaaacttgaagacgtcatgggcaaattttctctgttgaataattttaaagcatatattgtgagtgcttttaaatcgatttgtaatataatcaaaagtgtttttgggggaaagaagaataatggactaatacctcgatctgaatgtcttttgaataaagcttcttgttctcatgaagatatgactcctcagaaccaaaaagttctaatatctagtattgagcttaaaaatagtgaggcttctgtagtgtttaaggctgctgatgagaatgatttgaaaaatctttctaaattagatttaagctcaaagcaaaaagaatttttttagggactttttctagtataattggtggagcttcaaatgtagcaattggatcatttgctgcaaatggactttttaaagctacggtaaatccaagtact HSP 3 e-value: 4.0E-8 bit: 61.9 Len: 83 Query Start:227 Query End:309 Subject Strand: NEGATIVE Subject Start: 227 Subject End: 309 ..................................................................................................................................................................................................................................aaactatatagtttggtctcaccaaagtatatagtttggttgaaccaaagtatatagtttagtctcaccaaactatatagttt................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ ..................................................................................................................................................................................................................................aaactatatagtttggtgagactaaactatatactttggttcaaccaaactatatactttggtgagaccaaactatatagttt................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Subject: NC_002950_PG0281_PG0282|ABC transporter, permease protein, putative:ABC transporter, ATP-binding protein|NEGATIVE:NEGATIVE|[316114,316333]|220 HSP 1 e-value: 9.0E-25 bit: 117.0 Len: 111 Query Start:226 Query End:336 Subject Strand: NEGATIVE Subject Start: 39 Subject End: 149 .................................................................................................................................................................................................................................caaactatatagtttggtctcaccaaagtatatagtttggttgaaccaaagtatatagtttagtctcaccaaactatatagtttagttttgccaaagtatatagtttgatt..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... .................................................................................................................................................................................................................................caaactatatagtttgaccaaaccaaagtatatagtttggttcaaccaaagtatatagttcggtcagaccaaactatatagtttagtcagaccaaagtatatagtttgatt..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 5.0E-14 bit: 81.8 Len: 97 Query Start:218 Query End:314 Subject Strand: POSITIVE Subject Start: 57 Subject End: 153 .........................................................................................................................................................................................................................ggtctgatcaaactatatagtttggtctcaccaaagtatatagtttggttgaaccaaagtatatagtttagtctcaccaaactatatagtttagttt........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... .........................................................................................................................................................................................................................ggtctgactaaactatatagtttggtctgaccgaactatatactttggttgaaccaaactatatactttggtttggtcaaactatatagtttggttt........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 3 e-value: 7.0E-10 bit: 67.9 Len: 110 Query Start:224 Query End:333 Subject Strand: POSITIVE Subject Start: 40 Subject End: 149 ...............................................................................................................................................................................................................................atcaaactatatagtttggtctcaccaaagtatatagtttggttgaaccaaagtatatagtttagtctcaccaaactatatagtttagttttgccaaagtatatagtttg........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ ...............................................................................................................................................................................................................................atcaaactatatactttggtctgactaaactatatagtttggtctgaccgaactatatactttggttgaaccaaactatatactttggtttggtcaaactatatagtttg........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ HSP 4 e-value: 7.0E-7 bit: 58.0 Len: 49 Query Start:216 Query End:264 Subject Strand: NEGATIVE Subject Start: 42 Subject End: 90 .......................................................................................................................................................................................................................tcggtctgatcaaactatatagtttggtctcaccaaagtatatagtttg............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. .......................................................................................................................................................................................................................tcggtcagaccaaactatatagtttagtcagaccaaagtatatagtttg............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Subject: NC_002950_PG0711_PG0712|hypothetical protein:hypothetical protein|POSITIVE:NEGATIVE|[766342,766873]|532 HSP 1 e-value: 2.0E-22 bit: 109.0 Len: 107 Query Start:226 Query End:332 Subject Strand: NEGATIVE Subject Start: 166 Subject End: 272 .................................................................................................................................................................................................................................caaactatatagtttggtctcaccaaagtatatagtttggttgaaccaaagtatatagtttagtctcaccaaactatatagtttagttttgccaaagtatatagttt......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... .................................................................................................................................................................................................................................caaagtatatagtttggtttcatcaaagtatatagtttggttcgaccaaagtatatagttcggtttgaccaaactatatagtttagttcaaccaaactatatagttt......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 1.0E-17 bit: 93.7 Len: 91 Query Start:224 Query End:314 Subject Strand: NEGATIVE Subject Start: 161 Subject End: 251 ...............................................................................................................................................................................................................................atcaaactatatagtttggtctcaccaaagtatatagtttggttgaaccaaagtatatagtttagtctcaccaaactatatagtttagttt........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ...............................................................................................................................................................................................................................atcaaagtatatagtttggttcgaccaaagtatatagttcggtttgaccaaactatatagtttagttcaaccaaactatatagtttagttt........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 3 e-value: 7.0E-10 bit: 67.9 Len: 86 Query Start:247 Query End:332 Subject Strand: NEGATIVE Subject Start: 189 Subject End: 274 ......................................................................................................................................................................................................................................................accaaagtatatagtttggttgaaccaaagtatatagtttagtctcaccaaactatatagtttagttttgccaaagtatatagttt......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ......................................................................................................................................................................................................................................................accaaagtatatagtttggtttcatcaaagtatatagtttggttcgaccaaagtatatagttcggtttgaccaaactatatagttt......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 4 e-value: 1.0E-8 bit: 63.9 Len: 92 Query Start:227 Query End:318 Subject Strand: POSITIVE Subject Start: 189 Subject End: 280 ..................................................................................................................................................................................................................................aaactatatagtttggtctcaccaaagtatatagtttggttgaaccaaagtatatagtttagtctcaccaaactatatagtttagttttgcc....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ..................................................................................................................................................................................................................................aaactatatagtttggtcaaaccgaactatatactttggtcgaaccaaactatatactttgatgaaaccaaactatatactttggttttgcc....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 5 e-value: 4.0E-8 bit: 61.9 Len: 63 Query Start:269 Query End:331 Subject Strand: NEGATIVE Subject Start: 213 Subject End: 275 ............................................................................................................................................................................................................................................................................aaccaaagtatatagtttagtctcaccaaactatatagtttagttttgccaaagtatatagtt.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ............................................................................................................................................................................................................................................................................aaccaaagtatatagtttggtttcatcaaagtatatagtttggttcgaccaaagtatatagtt.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 6 e-value: 3.0E-6 bit: 56.0 Len: 52 Query Start:254 Query End:305 Subject Strand: POSITIVE Subject Start: 170 Subject End: 221 .............................................................................................................................................................................................................................................................tatatagtttggttgaaccaaagtatatagtttagtctcaccaaactatata.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... .............................................................................................................................................................................................................................................................tatatagtttggttgaactaaactatatagtttggtcaaaccgaactatata.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: NC_002950_PG0453_PG0456|hypothetical protein:PHP N-terminal domain protein|POSITIVE:POSITIVE|[496731,497854]|1124 HSP 1 e-value: 1.0E-20 bit: 103.0 Len: 112 Query Start:224 Query End:335 Subject Strand: NEGATIVE Subject Start: 51 Subject End: 162 ...............................................................................................................................................................................................................................atcaaactatatagtttggtctcaccaaagtatatagtttggttgaaccaaagtatatagtttagtctcaccaaactatatagtttagttttgccaaagtatatagtttgat...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ...............................................................................................................................................................................................................................atcaaagtatatagtttggttcgaccaaagtatatagtttagtcggaccaaagtatatagtttagttgaaccaaactatatagtttagtttgggccaaatatatggtttgat...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 5.0E-20 bit: 101.0 Len: 107 Query Start:226 Query End:332 Subject Strand: NEGATIVE Subject Start: 77 Subject End: 183 .................................................................................................................................................................................................................................caaactatatagtttggtctcaccaaagtatatagtttggttgaaccaaagtatatagtttagtctcaccaaactatatagtttagttttgccaaagtatatagttt......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... .................................................................................................................................................................................................................................caaagtatatagtttggctttatcaaagtatatagtttggttcgaccaaagtatatagtttagtcggaccaaagtatatagtttagttgaaccaaactatatagttt......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 3 e-value: 7.0E-10 bit: 67.9 Len: 86 Query Start:247 Query End:332 Subject Strand: NEGATIVE Subject Start: 100 Subject End: 185 ......................................................................................................................................................................................................................................................accaaagtatatagtttggttgaaccaaagtatatagtttagtctcaccaaactatatagtttagttttgccaaagtatatagttt......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ......................................................................................................................................................................................................................................................accaaagtatatagtttggctttatcaaagtatatagtttggttcgaccaaagtatatagtttagtcggaccaaagtatatagttt......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AAUUAAAACAGAUUAAAAAGUUAUGGCCGCAAUAUCGCGGCGCACAAAAGUGUAUCGUUUUUUCUAUACGGACAAUAGCAAAGACCUUCAUUGUUGAAAAGUUUUCCAUAUUUAUUUCGUAAUUCAUUGUGAAUGAGGGCAUUGUGUUUUGCACUAUUCGGCUAAAAUUUUCCAAAAACUUUUCUUUUUAGUCGGCCUGAAUCGGGCUAAAAAAAUCGGUCUGAUCAAACUAUAUAGUUUGGUCUCACCAAAGUAUAUAGUUUGGUUGAACCAAAGUAUAUAGUUUAGUCUCACCAAACUAUAUAGUUUAGUUUUGCCAAAGUAUAUAGUUUGAUUUCGGUGUUGUUUUAGCAUGGUUUCAUCAGCCCCAAGAGAAGCCUCCGCCCCUCAUCCGAAACGCUCGGAACAUCUCCCCCAAUCCUCAUCCUAUACCUUAUAUAUAUAGUGUAUCGAAAUAUGUGCUCCGAUAGAGGUCGCCUUUCCUUUCGGCCCCAGCUUCUCCGAUACAUCUUACAGCCGCUCUCCAAGAAAAUGAUUUUAUAUUCCCGGUGCUGUAAUUAGGAGUCAAUUUGUUCUUAAUUUAGCAUCUGUACAGUGAGAAUGAUUAAGAUAUAUAAGUCUAACUAUUUCUCAUUUUUGUGAUUUUUGUAUUUUUGCGAGACUAGAAUUUCUUUAAACUUGAAGACGUCAUGGGCAAAUUUUCUCUGUUGAAUAAUUUUAAAGCAUAUAUUGUGAGUGCUUUUAAAUCGAUUUGUAAUAUAAUCAAAAGUGUUUUUGGGGGAAAGAAGAAUAAUGGACUAAUACCUCGAUCUGAAUGUCUUUUGAAUAAAGCUUCUUGUUCUCAUGAAGAUAUGACUCCUCAGAACCAAAAAGUUCUAAUAUCUAGUAUUGAGCUUAAAAAUAGUGAGGCUUCUGUAGUGUUUAAGGCUGCUGAUGAGAAUGAUUUGAAAAAUCUUUCUAAAUUAGAUUUAAGCUCAAAGCAAAAAGAAUUUUUUUAGGGACUUUUUCUAGUAUAAUUGGUGGAGCUUCAAAUGUAGCAAUUGGAUCAUUUGCUGCAAAUGGACUUUUUAAAGCUACGGUAAAUCCAAGUACU ............((((((((((.....((((((...(((..((((....))))..)))........((((((.((((...(((((.((((....))))..)))))...))))...))))))....))))))..((.((((...(((.....)))...((((((((((..................))))))))))...((((((.(((((((..(((((...((((((((((((((.((((((...((.(((.(((((((((((((.((((.(((.(....).))).)).))))))))))))))).))).))...)))))).)))))))))))))))))))....))))))).)))))).....))))))...(((((.((((((.....(((((.....))))).....((((((((..(((((..(((((..((....))..)))))....((((((((((.(((((((((..(((.........))).........................(((..((((((((((.(..(..(((((.....(((((((.(((((((((.(.....))))))))))))))))).....((((((((......((((......))))......))))))))..)))))...)..).)))))).))))...((...((((((....))))))..))...)))......)))))))))...........))))))))))))))).((((((.....((((........))))))))))....)))))))).(((((((...................(((((((((((((.((((((......))))))....))))))))......))))).((((((((((((........((.(((((((((((..((((......((.(((((.......))))).))..((((.((((.....)))).))))..))))..))))))))))).))....))))))))))..))...))))))).........)))))))))))...((((((((.((...)).))))))))....)))))))))).((....))............. (-280.37) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AGUACUUGGAUUUACCGUAGCUUUAAAAAGUCCAUUUGCAGCAAAUGAUCCAAUUGCUACAUUUGAAGCUCCACCAAUUAUACUAGAAAAAGUCCCUAAAAAAAUUCUUUUUGCUUUGAGCUUAAAUCUAAUUUAGAAAGAUUUUUCAAAUCAUUCUCAUCAGCAGCCUUAAACACUACAGAAGCCUCACUAUUUUUAAGCUCAAUACUAGAUAUUAGAACUUUUUGGUUCUGAGGAGUCAUAUCUUCAUGAGAACAAGAAGCUUUAUUCAAAAGACAUUCAGAUCGAGGUAUUAGUCCAUUAUUCUUCUUUCCCCCAAAAACACUUUUGAUUAUAUUACAAAUCGAUUUAAAAGCACUCACAAUAUAUGCUUUAAAAUUAUUCAACAGAGAAAAUUUGCCCAUGACGUCUUCAAGUUUAAAGAAAUUCUAGUCUCGCAAAAAUACAAAAAUCACAAAAAUGAGAAAUAGUUAGACUUAUAUAUCUUAAUCAUUCUCACUGUACAGAUGCUAAAUUAAGAACAAAUUGACUCCUAAUUACAGCACCGGGAAUAUAAAAUCAUUUUCUUGGAGAGCGGCUGUAAGAUGUAUCGGAGAAGCUGGGGCCGAAAGGAAAGGCGACCUCUAUCGGAGCACAUAUUUCGAUACACUAUAUAUAUAAGGUAUAGGAUGAGGAUUGGGGGAGAUGUUCCGAGCGUUUCGGAUGAGGGGCGGAGGCUUCUCUUGGGGCUGAUGAAACCAUGCUAAAACAACACCGAAAUCAAACUAUAUACUUUGGCAAAACUAAACUAUAUAGUUUGGUGAGACUAAACUAUAUACUUUGGUUCAACCAAACUAUAUACUUUGGUGAGACCAAACUAUAUAGUUUGAUCAGACCGAUUUUUUUAGCCCGAUUCAGGCCGACUAAAAAGAAAAGUUUUUGGAAAAUUUUAGCCGAAUAGUGCAAAACACAAUGCCCUCAUUCACAAUGAAUUACGAAAUAAAUAUGGAAAACUUUUCAACAAUGAAGGUCUUUGCUAUUGUCCGUAUAGAAAAAACGAUACACUUUUGUGCGCCGCGAUAUUGCGGCCAUAACUUUUUAAUCUGUUUUAAUU ....((((((......(.(((((((((.........((.(((((.((...)).))))).))))))))))).)....................(((((...((((.((((((((..((((.......)).))..)))))))).))))......(((((((((....((((((.....(((((..((.((...........(((............((((((((....))))))))((((((((((((.((((((((...(((.((((.....))))...))).(((..((((((.((((.((((((..((.......(((((....)))))...............(((((.((((((...........)))))).....................(((((....(((.((((........)))).......)))..))))).......)))))........))..))))))..))))...))))))..))).)))))).))...))))).................))))))).......))).(((((((.((......)).))))))).))))..)))))...((((((((((..(((....((....))...)))...(((.....)))......)))))))))).........))))))....)))))))))..))))).....)))))).....((((..(..(((((((((((.(((((.((((..((((.(...(((((((..........(((((((((((((.(((((....((((((.(((((((((((((..(((((((........)))))))..))))))))))))).))))))....))))).)))))))))))))...........)))))))..).)))))))).........(((((((((((.(............((((((.(((........))).)).))))....((.....)).........).)))))))))))..))).))))))))))))).)..)))).......((((((((......(((((.((((((....))))))))))).......))).))))).... (-267.14) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 922 70 21 161 112 NC_002950:PG0555|5end_DNA-binding_protein,_histone-like_family_612234..612464_NEGATIVE 426 270 221 200 151 NC_002950:PG0281|5end_ABC_transporter,_permease_protein,_putative_316023..316253_NEGATIVE 405 518 473 89 25 NC_002950:PG1318|5end_RNA_polymerase_sigma-70_factor,_ECF_subfamily_1397768..1397998_NEGATIVE 398 418 372 193 149 NC_002950:PG0882|5end_hypothetical_protein_944195..944425_POSITIVE 389 404 371 224 194 NC_002950:PG1498|5end_hypothetical_protein_1574656..1574886_POSITIVE 384 508 465 219 161 NC_002950:PG1837|5end_hemagglutinin_protein_HagA_1930337..1930567_POSITIVE 383 400 355 49 6 NC_002950:PG0362|5end_hypothetical_protein_395301..395531_POSITIVE 376 428 381 123 75 NC_002950:PG0438|5end_hypothetical_protein_476884..477114_POSITIVE 370 530 482 66 12 NC_002950:PG0491|5end_hypothetical_protein_532184..532414_POSITIVE 365 409 361 161 113 NC_002950:PG1966|5end_hypothetical_protein_2056924..2057154_NEGATIVE 365 501 463 229 190 NC_002950:PG1361|5end_dipeptidyl_aminopeptidase_IV,_putative_1442108..1442338_NEGATIVE 365 416 374 153 95 NC_002950:PG1311|5end_hypothetical_protein_1389709..1389939_POSITIVE 361 419 372 196 127 NC_002950:PG0361|5end_hypothetical_protein_394094..394324_POSITIVE 360 505 461 128 68 NC_002950:PG1363|5end_hypothetical_protein_1443804..1444034_POSITIVE 358 399 351 70 7 NC_002950:PG1067|5end_hypothetical_protein_1134219..1134449_POSITIVE 357 410 363 72 25 NC_002950:PG1728|5end_cytidine/deoxycytidylate_deaminase_family_protein_1817644..1817874_POSITIVE 357 410 363 187 123 NC_002950:PG0559|5end_chlorohydrolase_family_protein_617496..617726_NEGATIVE 356 520 472 46 5 NC_002950:PG1657|5end_methylmalonyl-CoA_mutase_1739344..1739574_POSITIVE 354 499 454 211 171 NC_002950:PG2001|5end_signal_peptidase_I_2090855..2091085_NEGATIVE 354 505 462 153 100 NC_002950:PG1394|5end_hypothetical_protein_1476782..1477012_NEGATIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 398 418 372 83 39 NC_002950:PG0881|3end_recombinase_A_944165..944315_POSITIVE 396 410 361 141 84 NC_002950:PG2040|3end_DNA-binding_protein,_histone-like_family_2138398..2138548_NEGATIVE 389 404 371 123 93 NC_002950:PG1497|3end_DNA-binding_protein,_histone-like_family_1574635..1574785_POSITIVE 383 400 355 149 106 NC_002950:PG0361|3end_hypothetical_protein_395481..395631_POSITIVE 370 497 451 122 68 NC_002950:PG0443|3end_hemagglutinin-related_protein_483147..483297_POSITIVE 365 410 364 119 65 NC_002950:PG0340|3end_hypothetical_protein_376436..376586_POSITIVE 360 340 296 43 1 NC_002950:PG0453|3end_hypothetical_protein_496670..496820_POSITIVE 354 520 477 145 103 NC_002950:PG0366|3end_hypothetical_protein_400255..400405_NEGATIVE 353 519 471 82 32 NC_002950:PG2032|3end_primosomal_protein_N'_2130868..2131018_NEGATIVE 352 530 486 83 39 NC_002950:PG0062|3end_TPR_domain_protein_75810..75960_POSITIVE 350 520 472 49 1 NC_002950:PG0439|3end_hypothetical_protein_478810..478960_POSITIVE 346 525 481 117 46 NC_002950:PG0507|3end_hypothetical_protein_548190..548340_POSITIVE 344 509 463 138 94 NC_002950:PG0800|3end_hypothetical_protein_854719..854869_NEGATIVE 341 519 471 100 43 NC_002950:PG1600|3end_hypothetical_protein_1679959..1680109_NEGATIVE 339 428 382 122 54 NC_002950:PG2076|3end_hypothetical_protein_2177073..2177223_POSITIVE 339 378 331 150 103 NC_002950:PG0630|3end_pyridoxal_phosphate_biosynthetic_protein_684188..684338_POSITIVE 338 503 461 127 78 NC_002950:PG2099|3end_ATP-dependent_RNA_helicase,_DEAD/DEAH_box_family_2206649..2206799_NEGATIVE 337 519 473 62 11 NC_002950:PG1694|3end_hypothetical_protein_1777916..1778066_NEGATIVE 336 404 361 134 77 NC_002950:PG1389|3end_DNA-binding_protein,_histone-like_family_1470870..1471020_NEGATIVE 334 428 388 118 67 NC_002950:PG1002|3end_hypothetical_protein_1059237..1059387_POSITIVE