Origin IGS: cggttcaaattacgaatgcccttggggaaaacgattcctttctcttctcgaatcgttgacttttctggttattctgattacttagattcttccgatgcatagtcgaaaagataaatatagccttcactgttgataactcggtgcgaaaagtatcggcagatcggtgcgaaatgtattcctttgtatttgtctgccggcaggtgtagcgatgcatttttcagcctgttcggtattcatcattattctataaaaacacataccaacatgaaagttaaatctaacggcgcatcggcacgggaggatgtattcccattccgagtccatcgcgtcaaagaagtagccgtgcgctactttccgcaccttactccgaattccggtacacgtgctctgcgaagaatcatctatggggatcaagatctcctcaattcgatgagagaacatggttatgctctgggacagagatccttgacaccggctatgctcaacgtccttacagcctatcttggttcgcccgaagatttttgtccttgacggacaatagctgaaagtctgcttatagggggtatgtcgaagtcgtgatttgcggctttcggcataccccctttcagtatatgcaaagaggatgt .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 acatcctctttgcatatactgaaagggggtatgccgaaagccgcaaatcacgacttcgacataccccctataagcagactttcagctattgtccgtcaaggacaaaaatcttcgggcgaaccaagataggctgtaaggacgttgagcatagccggtgtcaaggatctctgtcccagagcataaccatgttctctcatcgaattgaggagatcttgatccccatagatgattcttcgcagagcacgtgtaccggaattcggagtaaggtgcggaaagtagcgcacggctacttctttgacgcgatggactcggaatgggaatacatcctcccgtgccgatgcgccgttagatttaactttcatgttggtatgtgtttttatagaataatgatgaataccgaacaggctgaaaaatgcatcgctacacctgccggcagacaaatacaaaggaatacatttcgcaccgatctgccgatacttttcgcaccgagttatcaacagtgaaggctatatttatcttttcgactatgcatcggaagaatctaagtaatcagaataaccagaaaagtcaacgattcgagaagagaaaggaatcgttttccccaagggcattcgtaatttgaaccg Mask Tandem Repeat Region ================================================ cggttcaaattacgaatgcccttggggaaaacgattcctttctcttctcgaatcgttgacttttctggttattctgattacttagattcttccgatgcatagtcgaaaagataaatatagccttcactgttgataactcggtgcgaaaagtatcggcagatcggtgcgaaatgtattcctttgtatttgtctgccggcaggtgtagcgatgcatttttcagcctgttcggtattcatcattattctataaaaacacataccaacatgaaagttaaatctaacggcgcatcggcacgggaggatgtattcccattccgagtccatcgcgtcaaagaagtagccgtgcgctactttccgcaccttactccgaattccggtacacgtgctctgcgaagaatcatctatggggatcaagatctcctcaattcgatgagagaacatggttatgctctgggacagagatccttgacaccggctatgctcaacgtccttacagcctatcttggttcgcccgaagatttttgtccttgacggacaatagctgaaagtctgcttatagggggtatgtcgaagtcgtgatttgcggctttcggcataccccctttcagtatatgcaaagaggatgt Find is-nt database================================================ Query_seq: PG0472:PG0474|PG0472:PG0474:iron-sulfur cluster binding protein, putative:low-specificity L-threonine aldolase:-><-:514475..515100 626 cggttcaaattacgaatgcccttggggaaaacgattcctttctcttctcgaatcgttgacttttctggttattctgattacttagattcttccgatgcatagtcgaaaagataaatatagccttcactgttgataactcggtgcgaaaagtatcggcagatcggtgcgaaatgtattcctttgtatttgtctgccggcaggtgtagcgatgcatttttcagcctgttcggtattcatcattattctataaaaacacataccaacatgaaagttaaatctaacggcgcatcggcacgggaggatgtattcccattccgagtccatcgcgtcaaagaagtagccgtgcgctactttccgcaccttactccgaattccggtacacgtgctctgcgaagaatcatctatggggatcaagatctcctcaattcgatgagagaacatggttatgctctgggacagagatccttgacaccggctatgctcaacgtccttacagcctatcttggttcgcccgaagatttttgtccttgacggacaatagctgaaagtctgcttatagggggtatgtcgaagtcgtgatttgcggctttcggcataccccctttcagtatatgcaaagaggatgt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PG0472:PG0474|PG0472:PG0474:iron-sulfur cluster binding protein, putative:low-specificity L-threonine aldolase:-><-:514475..515100 626 cggttcaaattacgaatgcccttggggaaaacgattcctttctcttctcgaatcgttgacttttctggttattctgattacttagattcttccgatgcatagtcgaaaagataaatatagccttcactgttgataactcggtgcgaaaagtatcggcagatcggtgcgaaatgtattcctttgtatttgtctgccggcaggtgtagcgatgcatttttcagcctgttcggtattcatcattattctataaaaacacataccaacatgaaagttaaatctaacggcgcatcggcacgggaggatgtattcccattccgagtccatcgcgtcaaagaagtagccgtgcgctactttccgcaccttactccgaattccggtacacgtgctctgcgaagaatcatctatggggatcaagatctcctcaattcgatgagagaacatggttatgctctgggacagagatccttgacaccggctatgctcaacgtccttacagcctatcttggttcgcccgaagatttttgtccttgacggacaatagctgaaagtctgcttatagggggtatgtcgaagtcgtgatttgcggctttcggcataccccctttcagtatatgcaaagaggatgt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PG0472:PG0474|PG0472:PG0474:iron-sulfur cluster binding protein, putative:low-specificity L-threonine aldolase:-><-:514475..515100 626 cggttcaaattacgaatgcccttggggaaaacgattcctttctcttctcgaatcgttgacttttctggttattctgattacttagattcttccgatgcatagtcgaaaagataaatatagccttcactgttgataactcggtgcgaaaagtatcggcagatcggtgcgaaatgtattcctttgtatttgtctgccggcaggtgtagcgatgcatttttcagcctgttcggtattcatcattattctataaaaacacataccaacatgaaagttaaatctaacggcgcatcggcacgggaggatgtattcccattccgagtccatcgcgtcaaagaagtagccgtgcgctactttccgcaccttactccgaattccggtacacgtgctctgcgaagaatcatctatggggatcaagatctcctcaattcgatgagagaacatggttatgctctgggacagagatccttgacaccggctatgctcaacgtccttacagcctatcttggttcgcccgaagatttttgtccttgacggacaatagctgaaagtctgcttatagggggtatgtcgaagtcgtgatttgcggctttcggcataccccctttcagtatatgcaaagaggatgt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 1 Min: 316 Max: 513 Len: 198 Subject: UniRef90_Q8A0J1 Cluster: Hypothetical protein; n=1; Bacteroides thetaiotaomicron|Rep: Hypothetical protein - Bacteroides thetaiotaomicron HSP 1 e-value: 8.0E-6 bit: 52.8 Len: 198 Query Start:316 Query End:513 Subject Strand: null Subject Start: 18 Subject End: 83 ........................................................................................................................................................................................................................................................................................................................... R V H R V K E V A V R Y F P H L T P N S G T R A L R R I I Y G D Q D L L N S M R E H G Y A L G Q R S L T P A M L N V L T A Y L G S P ................................................................................................................. ........................................................................................................................................................................................................................................................................................................................... R S Y G F K E L A V L Y F P N I A P A S A S I R L K Q W I K D D V E L L G S L E E T N Y H L S N R I L T P K Q R D L I T T T F G S P ................................................................................................................. cggttcaaattacgaatgcccttggggaaaacgattcctttctcttctcgaatcgttgacttttctggttattctgattacttagattcttccgatgcatagtcgaaaagataaatatagccttcactgttgataactcggtgcgaaaagtatcggcagatcggtgcgaaatgtattcctttgtatttgtctgccggcaggtgtagcgatgcatttttcagcctgttcggtattcatcattattctataaaaacacataccaacatgaaagttaaatctaacggcgcatcggcacgggaggatgtattcccattcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaagatttttgtccttgacggacaatagctgaaagtctgcttatagggggtatgtcgaagtcgtgatttgcggctttcggcataccccctttcagtatatgcaaagaggatgt Predict ORF larger than 30AA ================================================ Protein_Len: 35 Strand: + Start: 99 End: 203 .................................................................................................. M V E K I N I A F T V D N S V R K V S A D R C E M Y S F V F V C R Q V ....................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 32 Strand: + Start: 152 End: 247 ....................................................................................................................................................... M G R S V R N V F L C I C L P A G V A M H F S A C S V F I I I L ........................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 127 End: 528 .............................................................................................................................. M L I T R C E K Y R Q I G A K C I P L Y L S A G R C S D A F F S L F G I H H Y S I K T H T N M K V K S N G A S A R E D V .................................................................................................. Protein_Len: 60 Strand: + Start: 288 End: 542 ............................................................................................................................................................................................................................................................................................... M G T G G C I P I P S P S R Q R S S R A L L S A P Y S E F R Y T C S A K N H L W G S R S P Q F D E R T W L C S G T E I L .................................................................................... Protein_Len: 39 Strand: - Start: 501 End: 617 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... R P E G S S K Q G Q R V I A S L R S I P P I D F D H N A A K P M G G K L I H M ......... Protein_Len: 30 Strand: - Start: 243 End: 332 .................................................................................................................................................................................................................................................. E I F V C V L M F T L D L P A D A R S S T N G N R T W R T M ...................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: - Start: 127 End: 624 .............................................................................................................................. I S Q S L S G Q C R S H E V D K C G I K T R G F I K T R S P C Y S F T Q K Y P T H R L R S K R S E A Y G R E T Y A F L M .. Protein_Len: 51 Strand: - Start: 81 End: 233 ................................................................................ K S E E S A Y D F L Y I Y G E S N I V R H S F Y R C I P A F H I G K Y K D A P L H L S A N K L R N P M ......................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: - Start: 8 End: 214 ....... E K R K E F R Q S K Q N N Q N S L N K R H M T S F I F I A K V T S L E T R F T D A S R H S I Y E K T N T Q R C T Y R H M ............................................................................................................................................................................................................................................................................................................................................................................................................................ cggttcaaattacgaatgcccttggggaaaacgattcctttctcttctcgaatcgttgacttttctggttattctgattacttagattcttccgatgcatagtcgaaaagataaatatagccttcactgttgataactcggtgcgaaaagtatcggcagatcggtgcgaaatgtattcctttgtatttgtctgccggcaggtgtagcgatgcatttttcagcctgttcggtattcatcattattctataaaaacacataccaacatgaaagttaaatctaacggcgcatcggcacgggaggatgtattcccattcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaagatttttgtccttgacggacaatagctgaaagtctgcttatagggggtatgtcgaagtcgtgatttgcggctttcggcataccccctttcagtatatgcaaagaggatgt Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ cggttcaaattacgaatgcccttggggaaaacgattcctttctcttctcgaatcgttgacttttctggttattctgattacttagattcttccgatgcatagtcgaaaagataaatatagccttcactgttgataactcggtgcgaaaagtatcggcagatcggtgcgaaatgtattcctttgtatttgtctgccggcaggtgtagcgatgcatttttcagcctgttcggtattcatcattattctataaaaacacataccaacatgaaagttaaatctaacggcgcatcggcacgggaggatgtattcccattcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaagatttttgtccttgacggacaatagctgaaagtctgcttatagggggtatgtcgaagtcgtgatttgcggctttcggcataccccctttcagtatatgcaaagaggatgt Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 100 HP_score: -17.6 Tail_Score: -3.74077 Start: 559 End: 602 Full_Region: GAAAGTCTGCTTATA GGGGGTATGTCGAAGTCGTG ATT TGCGGCTTTCGGCATACCCCC TTTCAGTATATGCAA ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGGTATGTCGAAGTCGTGATTTGCGGCTTTCGGCATACCCCC........................ Find igs database================================================ Query_seq: PG0472:PG0474|PG0472:PG0474:iron-sulfur cluster binding protein, putative:low-specificity L-threonine aldolase:-><-:514475..515100 626 cggttcaaattacgaatgcccttggggaaaacgattcctttctcttctcgaatcgttgacttttctggttattctgattacttagattcttccgatgcatagtcgaaaagataaatatagccttcactgttgataactcggtgcgaaaagtatcggcagatcggtgcgaaatgtattcctttgtatttgtctgccggcaggtgtagcgatgcatttttcagcctgttcggtattcatcattattctataaaaacacataccaacatgaaagttaaatctaacggcgcatcggcacgggaggatgtattcccattcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaagatttttgtccttgacggacaatagctgaaagtctgcttatagggggtatgtcgaagtcgtgatttgcggctttcggcataccccctttcagtatatgcaaagaggatgt Intra-Species Hit: Count: 1 Min: 1 Max: 626 Len: 626 Subject: NC_002950_PG0472_PG0474|iron-sulfur cluster binding protein, putative:low-specificity L-threonine aldolase|POSITIVE:NEGATIVE|[514475,515100]|626 HSP 1 e-value: 1.0E-178 bit: 624.0 Len: 315 Query Start:1 Query End:315 Subject Strand: POSITIVE Subject Start: 1 Subject End: 315 cggttcaaattacgaatgcccttggggaaaacgattcctttctcttctcgaatcgttgacttttctggttattctgattacttagattcttccgatgcatagtcgaaaagataaatatagccttcactgttgataactcggtgcgaaaagtatcggcagatcggtgcgaaatgtattcctttgtatttgtctgccggcaggtgtagcgatgcatttttcagcctgttcggtattcatcattattctataaaaacacataccaacatgaaagttaaatctaacggcgcatcggcacgggaggatgtattcccattc....................................................................................................................................................................................................................................................................................................................... cggttcaaattacgaatgcccttggggaaaacgattcctttctcttctcgaatcgttgacttttctggttattctgattacttagattcttccgatgcatagtcgaaaagataaatatagccttcactgttgataactcggtgcgaaaagtatcggcagatcggtgcgaaatgtattcctttgtatttgtctgccggcaggtgtagcgatgcatttttcagcctgttcggtattcatcattattctataaaaacacataccaacatgaaagttaaatctaacggcgcatcggcacgggaggatgtattcccattc....................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 1.0E-56 bit: 222.0 Len: 112 Query Start:515 Query End:626 Subject Strand: POSITIVE Subject Start: 515 Subject End: 626 ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................aagatttttgtccttgacggacaatagctgaaagtctgcttatagggggtatgtcgaagtcgtgatttgcggctttcggcataccccctttcagtatatgcaaagaggatgt ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................aagatttttgtccttgacggacaatagctgaaagtctgcttatagggggtatgtcgaagtcgtgatttgcggctttcggcataccccctttcagtatatgcaaagaggatgt Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ CGGUUCAAAUUACGAAUGCCCUUGGGGAAAACGAUUCCUUUCUCUUCUCGAAUCGUUGACUUUUCUGGUUAUUCUGAUUACUUAGAUUCUUCCGAUGCAUAGUCGAAAAGAUAAAUAUAGCCUUCACUGUUGAUAACUCGGUGCGAAAAGUAUCGGCAGAUCGGUGCGAAAUGUAUUCCUUUGUAUUUGUCUGCCGGCAGGUGUAGCGAUGCAUUUUUCAGCCUGUUCGGUAUUCAUCAUUAUUCUAUAAAAACACAUACCAACAUGAAAGUUAAAUCUAACGGCGCAUCGGCACGGGAGGAUGUAUUCCCAUUCCGAGUCCAUCGCGUCAAAGAAGUAGCCGUGCGCUACUUUCCGCACCUUACUCCGAAUUCCGGUACACGUGCUCUGCGAAGAAUCAUCUAUGGGGAUCAAGAUCUCCUCAAUUCGAUGAGAGAACAUGGUUAUGCUCUGGGACAGAGAUCCUUGACACCGGCUAUGCUCAACGUCCUUACAGCCUAUCUUGGUUCGCCCGAAGAUUUUUGUCCUUGACGGACAAUAGCUGAAAGUCUGCUUAUAGGGGGUAUGUCGAAGUCGUGAUUUGCGGCUUUCGGCAUACCCCCUUUCAGUAUAUGCAAAGAGGAUGU ((((((((........(((((..(((.(.(((.((....(((((((.((((((...(((((.....))))).............((((((((((..((((.(((((...((............))....))))).....((((((.((((((.((((((((..(((((((.........)))))))..))))))))((((((.....(((....((((((...((((.(((((......((((...))))......)))))))))))))))....)))....(((((((.(((.((((((((.....)))..))))).))).)).))))).........))).)))..)))))).)))))).....(((.....))).....))))..)).))))))))......((((((....))))))...)))))).))))))).)).))).).))).))).)).......)))).))))..........((((((((.((((..(((((((.....)).)))))..((((((.....))))))..))))...((.((((...((((((((((((((((((((.....))))).)))))))))))))))...))))...))...)))))))) (-196.96) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ ACAUCCUCUUUGCAUAUACUGAAAGGGGGUAUGCCGAAAGCCGCAAAUCACGACUUCGACAUACCCCCUAUAAGCAGACUUUCAGCUAUUGUCCGUCAAGGACAAAAAUCUUCGGGCGAACCAAGAUAGGCUGUAAGGACGUUGAGCAUAGCCGGUGUCAAGGAUCUCUGUCCCAGAGCAUAACCAUGUUCUCUCAUCGAAUUGAGGAGAUCUUGAUCCCCAUAGAUGAUUCUUCGCAGAGCACGUGUACCGGAAUUCGGAGUAAGGUGCGGAAAGUAGCGCACGGCUACUUCUUUGACGCGAUGGACUCGGAAUGGGAAUACAUCCUCCCGUGCCGAUGCGCCGUUAGAUUUAACUUUCAUGUUGGUAUGUGUUUUUAUAGAAUAAUGAUGAAUACCGAACAGGCUGAAAAAUGCAUCGCUACACCUGCCGGCAGACAAAUACAAAGGAAUACAUUUCGCACCGAUCUGCCGAUACUUUUCGCACCGAGUUAUCAACAGUGAAGGCUAUAUUUAUCUUUUCGACUAUGCAUCGGAAGAAUCUAAGUAAUCAGAAUAACCAGAAAAGUCAACGAUUCGAGAAGAGAAAGGAAUCGUUUUCCCCAAGGGCAUUCGUAAUUUGAACCG .....(((((..(.....(((..((((((((((.((((.(.((.......)).))))).)))))))))).....))).(((.(((((.((((((.....))))))..(((((.((.....))))))).))))).)))..((((((..((((((((..(((((.(((((......(((((((....)))))))((((......))))))))))))))..))....((((((((...((...))..(((...(((((.((((((...(((((((((.(((((.....)))))(((((((..((((((...((((.((((((........)))))).))))...(((....((........))...(((((((.((((.((((...)))).)))).)))))))...))).........)))))).....(((....))).......))))))).....)))))))))...)).))))....)))))))).)))))))).........))))))......((((((.........((....)).(((.(....).))).......))))))))))))....)..)))))...((((.....)))).....((..((((.....)))))). (-187.80) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 415 369 321 62 6 NC_002950:PG0002|5end_hexapeptide_transferase_family_protein_1295..1525_POSITIVE 406 590 552 163 123 NC_002950:PG0951|5end_phosphoribosylaminoimidazole_carboxylase,_PurE_protein_1010242..1010472_POSITIVE 406 159 118 73 22 NC_002950:PG0659|5end_hypothetical_protein_709148..709378_NEGATIVE 405 600 554 38 1 NC_002950:PG1968|5end_hypothetical_protein_2058564..2058794_NEGATIVE 389 230 181 98 36 NC_002950:PG0227|5end_DNA_repair_protein_RadA_263978..264208_NEGATIVE 387 320 276 55 8 NC_002950:PG2107|5end_thiamine_biosynthesis_protein_ThiH_2216658..2216888_NEGATIVE 381 229 183 187 135 NC_002950:PG2199|5end_ABC_transporter,_ATP-binding_protein,_putative_2306723..2306953_NEGATIVE 380 330 285 97 41 NC_002950:PG0335|5end_tRNA_delta(2)-isopentenylpyrophosphate_transferase_370706..370936_NEGATIVE 379 519 471 212 152 NC_002950:PG1592|5end_HDIG_domain_protein_1669383..1669613_POSITIVE 376 326 290 35 4 NC_002950:PG1572|5end_hypothetical_protein_1651252..1651482_NEGATIVE 375 207 161 101 34 NC_002950:PG1311|5end_hypothetical_protein_1389709..1389939_POSITIVE 373 330 282 200 136 NC_002950:PG0744|5end_RNA_methyltransferase,_TrmH_family_791897..792127_NEGATIVE 372 600 552 56 16 NC_002950:PG1992|5end_glucose-inhibited_division_protein_A_2081410..2081640_POSITIVE 371 235 194 152 101 NC_002950:PG0362|5end_hypothetical_protein_395301..395531_POSITIVE 370 600 558 172 130 NC_002950:PG1281|5end_hypothetical_protein_1358848..1359078_POSITIVE 370 602 561 231 191 NC_002950:PG0768|5end_hypothetical_protein_822381..822611_NEGATIVE 369 527 487 178 129 NC_002950:PG1683|5end_hypothetical_protein_1769644..1769874_POSITIVE 369 199 154 158 116 NC_002950:PG0611|5end_lipoprotein,_putative_664012..664242_POSITIVE 368 620 573 224 164 NC_002950:PG1588|5end_hypothetical_protein_1666532..1666762_NEGATIVE 368 599 558 188 146 NC_002950:PG1253|5end_DNA_ligase,_NAD-dependent_1331606..1331836_NEGATIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 455 230 187 135 77 NC_002950:PG0569|3end_hypothetical_protein_624697..624847_NEGATIVE 440 600 558 52 7 NC_002950:PG0537|3end_aminoacyl-histidine_dipeptidase_588394..588544_POSITIVE 428 330 282 129 66 NC_002950:PG1972|3end_hemagglutinin_protein_HagB_2061203..2061353_POSITIVE 417 599 558 62 19 NC_002950:PG0138|3end_malonyl_CoA-acyl_carrier_protein_transacylase_161634..161784_POSITIVE 406 159 118 80 29 NC_002950:PG0660|3end_nitroreductase_family_protein_709141..709291_NEGATIVE 405 600 554 142 105 NC_002950:PG1968|3end_hypothetical_protein_2058460..2058610_NEGATIVE 380 330 285 80 24 NC_002950:PG0336|3end_hypothetical_protein_370723..370873_NEGATIVE 375 207 161 138 71 NC_002950:PG1310|3end_exsB_protein_1389826..1389976_POSITIVE 373 330 282 115 51 NC_002950:PG0745|3end_lactoylglutathione_lyase,_putative_791982..792132_NEGATIVE 370 600 558 45 3 NC_002950:PG1280|3end_hypothetical_protein_1358801..1358951_POSITIVE 370 602 561 57 17 NC_002950:PG0769|3end_fibronectin_type_III_domain_protein_822555..822705_NEGATIVE 369 600 551 71 15 NC_002950:PG0618|3end_alkyl_hydroperoxide_reductase,_C_subunit_671018..671168_POSITIVE 363 169 122 54 5 NC_002950:PG0399|3end_lipoprotein,_putative_435707..435857_NEGATIVE 362 517 472 124 70 NC_002950:PG0361|3end_hypothetical_protein_395481..395631_POSITIVE 359 370 321 102 32 NC_002950:PG1964|3end_bacterial_sugar_transferase_2054396..2054546_POSITIVE 359 330 281 130 75 NC_002950:PG1745|3end_phosphoribulokinase_family_protein_1829435..1829585_NEGATIVE 357 321 285 141 110 NC_002950:PG0857|3end_transcriptional_regulator,_putative_917623..917773_POSITIVE 356 320 282 42 4 NC_002950:PG2108|3end_thiazole_synthase_2216671..2216821_NEGATIVE 356 518 472 144 103 NC_002950:PG1625|3end_hypothetical_protein_1708718..1708868_POSITIVE 356 329 284 58 1 NC_002950:PG1553|3end_CobN/magnesium_chelatase_family_protein_1635347..1635497_POSITIVE