Origin IGS: tgcaccggcctcccaaagccttggtttgaccaagctaaaaccatgccctgatcaaaccatatatttggcccaaactaaactatatagtttggttcaactaaactatatactttggtccgactaaactatatactttggtcgaaccaaactatatactttgataaagccaaactatatactttggttttgccccctttagacccttgctgtcagtagtgtctacatccctgaaacagagcctataaggcccgatccgaaaaaggacattttaacccctaatactctccccaaaagaatcaaacaaagagaaacggctttcaagcgactgcattggactgcatgcattcgcattcttttgcgtcgggagagaaatctaccttacggggcgataggtctgcgaatgccttttttgccgttttgcaatcatgcgaaaagatgttaccgaatggtcgcccaaaagataccgagcaacatcgcaatcgctcgttatccttttttcaataaatcaagtacaattacattattagcccgataagtataaaatggttatgtgcatttataatcttatgcgtatttccatcgggccggtcgttttcgtttcaagacaataaaacattaagagcttatggcaacagggtttgtggcaagaatacgacctgtaatgaaatggaagtgtggagattaaacggcttgccgtttgacctcgttgccggcagtactccgaaactgcctttgccgaagaaaacgaaaaaaagcgatccaacgcgaaaaaaagaaccgaatgtggatagaagcaccaagagtataaagcaaaaaatgaaaaacagccttcgtatgtgagactgccgtaattaaggaacaagatgagaaaagtaaaagctgttatctcaataggcagctatcagaaaataaaaaagggtaaagtttcatctttctctgtgaataatattatctttgcagtaaattttcatgttatacaaagcattgtgtttcatttagattatcaaatacattatctattcattttataactataaacccaactaagatgtaaaataatagattttatgatggaaattctactagaacagtaaaggcctaaaataggcataatcacaattaat .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 attaattgtgattatgcctattttaggcctttactgttctagtagaatttccatcataaaatctattattttacatcttagttgggtttatagttataaaatgaatagataatgtatttgataatctaaatgaaacacaatgctttgtataacatgaaaatttactgcaaagataatattattcacagagaaagatgaaactttacccttttttattttctgatagctgcctattgagataacagcttttacttttctcatcttgttccttaattacggcagtctcacatacgaaggctgtttttcattttttgctttatactcttggtgcttctatccacattcggttctttttttcgcgttggatcgctttttttcgttttcttcggcaaaggcagtttcggagtactgccggcaacgaggtcaaacggcaagccgtttaatctccacacttccatttcattacaggtcgtattcttgccacaaaccctgttgccataagctcttaatgttttattgtcttgaaacgaaaacgaccggcccgatggaaatacgcataagattataaatgcacataaccattttatacttatcgggctaataatgtaattgtacttgatttattgaaaaaaggataacgagcgattgcgatgttgctcggtatcttttgggcgaccattcggtaacatcttttcgcatgattgcaaaacggcaaaaaaggcattcgcagacctatcgccccgtaaggtagatttctctcccgacgcaaaagaatgcgaatgcatgcagtccaatgcagtcgcttgaaagccgtttctctttgtttgattcttttggggagagtattaggggttaaaatgtcctttttcggatcgggccttataggctctgtttcagggatgtagacactactgacagcaagggtctaaagggggcaaaaccaaagtatatagtttggctttatcaaagtatatagtttggttcgaccaaagtatatagtttagtcggaccaaagtatatagtttagttgaaccaaactatatagtttagtttgggccaaatatatggtttgatcagggcatggttttagcttggtcaaaccaaggctttgggaggccggtgca Mask Tandem Repeat Region ================================================ tgcaccggcctcccaaagccttggtttgaccaagctaaaaccatgccctgatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttgccccctttagacccttgctgtcagtagtgtctacatccctgaaacagagcctataaggcccgatccgaaaaaggacattttaacccctaatactctccccaaaagaatcaaacaaagagaaacggctttcaagcgactgcattggactgcatgcattcgcattcttttgcgtcgggagagaaatctaccttacggggcgataggtctgcgaatgccttttttgccgttttgcaatcatgcgaaaagatgttaccgaatggtcgcccaaaagataccgagcaacatcgcaatcgctcgttatccttttttcaataaatcaagtacaattacattattagcccgataagtataaaatggttatgtgcatttataatcttatgcgtatttccatcgggccggtcgttttcgtttcaagacaataaaacattaagagcttatggcaacagggtttgtggcaagaatacgacctgtaatgaaatggaagtgtggagattaaacggcttgccgtttgacctcgttgccggcagtactccgaaactgcctttgccgaagaaaacgaaaaaaagcgatccaacgcgaaaaaaagaaccgaatgtggatagaagcaccaagagtataaagcaaaaaatgaaaaacagccttcgtatgtgagactgccgtaattaaggaacaagatgagaaaagtaaaagctgttatctcaataggcagctatcagaaaataaaaaagggtaaagtttcatctttctctgtgaataatattatctttgcagtaaattttcatgttatacaaagcattgtgtttcatttagattatcaaatacattatctattcattttataactataaacccaactaagatgtaaaataatagattttatgatggaaattctactagaacagtaaaggcctaaaataggcataatcacaattaat Find is-nt database================================================ Query_seq: PG0453:PG0456|PG0453:PG0456:hypothetical protein:PHP N-terminal domain protein:->->:496731..497854 1124 tgcaccggcctcccaaagccttggtttgaccaagctaaaaccatgccctgatcaaaccatatatttggcccaaactaaactatatagtttggttcaactaaactatatactttggtccgactaaactatatactttggtcgaaccaaactatatactttgataaagccaaactatatactttggttttgccccctttagacccttgctgtcagtagtgtctacatccctgaaacagagcctataaggcccgatccgaaaaaggacattttaacccctaatactctccccaaaagaatcaaacaaagagaaacggctttcaagcgactgcattggactgcatgcattcgcattcttttgcgtcgggagagaaatctaccttacggggcgataggtctgcgaatgccttttttgccgttttgcaatcatgcgaaaagatgttaccgaatggtcgcccaaaagataccgagcaacatcgcaatcgctcgttatccttttttcaataaatcaagtacaattacattattagcccgataagtataaaatggttatgtgcatttataatcttatgcgtatttccatcgggccggtcgttttcgtttcaagacaataaaacattaagagcttatggcaacagggtttgtggcaagaatacgacctgtaatgaaatggaagtgtggagattaaacggcttgccgtttgacctcgttgccggcagtactccgaaactgcctttgccgaagaaaacgaaaaaaagcgatccaacgcgaaaaaaagaaccgaatgtggatagaagcaccaagagtataaagcaaaaaatgaaaaacagccttcgtatgtgagactgccgtaattaaggaacaagatgagaaaagtaaaagctgttatctcaataggcagctatcagaaaataaaaaagggtaaagtttcatctttctctgtgaataatattatctttgcagtaaattttcatgttatacaaagcattgtgtttcatttagattatcaaatacattatctattcattttataactataaacccaactaagatgtaaaataatagattttatgatggaaattctactagaacagtaaaggcctaaaataggcataatcacaattaat Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PG0453:PG0456|PG0453:PG0456:hypothetical protein:PHP N-terminal domain protein:->->:496731..497854 1124 tgcaccggcctcccaaagccttggtttgaccaagctaaaaccatgccctgatcaaaccatatatttggcccaaactaaactatatagtttggttcaactaaactatatactttggtccgactaaactatatactttggtcgaaccaaactatatactttgataaagccaaactatatactttggttttgccccctttagacccttgctgtcagtagtgtctacatccctgaaacagagcctataaggcccgatccgaaaaaggacattttaacccctaatactctccccaaaagaatcaaacaaagagaaacggctttcaagcgactgcattggactgcatgcattcgcattcttttgcgtcgggagagaaatctaccttacggggcgataggtctgcgaatgccttttttgccgttttgcaatcatgcgaaaagatgttaccgaatggtcgcccaaaagataccgagcaacatcgcaatcgctcgttatccttttttcaataaatcaagtacaattacattattagcccgataagtataaaatggttatgtgcatttataatcttatgcgtatttccatcgggccggtcgttttcgtttcaagacaataaaacattaagagcttatggcaacagggtttgtggcaagaatacgacctgtaatgaaatggaagtgtggagattaaacggcttgccgtttgacctcgttgccggcagtactccgaaactgcctttgccgaagaaaacgaaaaaaagcgatccaacgcgaaaaaaagaaccgaatgtggatagaagcaccaagagtataaagcaaaaaatgaaaaacagccttcgtatgtgagactgccgtaattaaggaacaagatgagaaaagtaaaagctgttatctcaataggcagctatcagaaaataaaaaagggtaaagtttcatctttctctgtgaataatattatctttgcagtaaattttcatgttatacaaagcattgtgtttcatttagattatcaaatacattatctattcattttataactataaacccaactaagatgtaaaataatagattttatgatggaaattctactagaacagtaaaggcctaaaataggcataatcacaattaat Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PG0453:PG0456|PG0453:PG0456:hypothetical protein:PHP N-terminal domain protein:->->:496731..497854 1124 tgcaccggcctcccaaagccttggtttgaccaagctaaaaccatgccctgatcaaaccatatatttggcccaaactaaactatatagtttggttcaactaaactatatactttggtccgactaaactatatactttggtcgaaccaaactatatactttgataaagccaaactatatactttggttttgccccctttagacccttgctgtcagtagtgtctacatccctgaaacagagcctataaggcccgatccgaaaaaggacattttaacccctaatactctccccaaaagaatcaaacaaagagaaacggctttcaagcgactgcattggactgcatgcattcgcattcttttgcgtcgggagagaaatctaccttacggggcgataggtctgcgaatgccttttttgccgttttgcaatcatgcgaaaagatgttaccgaatggtcgcccaaaagataccgagcaacatcgcaatcgctcgttatccttttttcaataaatcaagtacaattacattattagcccgataagtataaaatggttatgtgcatttataatcttatgcgtatttccatcgggccggtcgttttcgtttcaagacaataaaacattaagagcttatggcaacagggtttgtggcaagaatacgacctgtaatgaaatggaagtgtggagattaaacggcttgccgtttgacctcgttgccggcagtactccgaaactgcctttgccgaagaaaacgaaaaaaagcgatccaacgcgaaaaaaagaaccgaatgtggatagaagcaccaagagtataaagcaaaaaatgaaaaacagccttcgtatgtgagactgccgtaattaaggaacaagatgagaaaagtaaaagctgttatctcaataggcagctatcagaaaataaaaaagggtaaagtttcatctttctctgtgaataatattatctttgcagtaaattttcatgttatacaaagcattgtgtttcatttagattatcaaatacattatctattcattttataactataaacccaactaagatgtaaaataatagattttatgatggaaattctactagaacagtaaaggcctaaaataggcataatcacaattaat Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 tgcaccggcctcccaaagccttggtttgaccaagctaaaaccatgccctgatcaaaccatatatttggcccaaactaaactatatagtttggttcaactaaactatatactttggtccgactaaactatatactttggtcgaaccaaactatatactttgataaagccaaactatatactttggttttgccccctttagacccttgctgtcagtagtgtctacatccctgaaacagagcctataaggcccgatccgaaaaaggacattttaacccctaatactctccccaaaagaatcaaacaaagagaaacggctttcaagcgactgcattggactgcatgcattcgcattcttttgcgtcgggagagaaatctaccttacggggcgataggtctgcgaatgccttttttgccgttttgcaatcatgcgaaaagatgttaccgaatggtcgcccaaaagataccgagcaacatcgcaatcgctcgttatccttttttcaataaatcaagtacaattacattattagcccgataagtataaaatggttatgtgcatttataatcttatgcgtatttccatcgggccggtcgttttcgtttcaagacaataaaacattaagagcttatggcaacagggtttgtggcaagaatacgacctgtaatgaaatggaagtgtggagattaaacggcttgccgtttgacctcgttgccggcagtactccgaaactgcctttgccgaagaaaacgaaaaaaagcgatccaacgcgaaaaaaagaaccgaatgtggatagaagcaccaagagtataaagcaaaaaatgaaaaacagccttcgtatgtgagactgccgtaattaaggaacaagatgagaaaagtaaaagctgttatctcaataggcagctatcagaaaataaaaaagggtaaagtttcatctttctctgtgaataatattatctttgcagtaaattttcatgttatacaaagcattgtgtttcatttagattatcaaatacattatctattcattttataactataaacccaactaagatgtaaaataatagattttatgatggaaattctactagaacagtaaaggcctaaaataggcataatcacaattaat Predict ORF larger than 30AA ================================================ Protein_Len: 32 Strand: + Start: 26 End: 121 ......................... M T K L K P C P D Q T I Y L A Q T K L Y S L V Q L N Y I L W S D ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 34 Strand: + Start: 112 End: 213 ............................................................................................................... M V R L N Y I L W S N Q T I Y F D K A K L Y T L V L P P L D P C C Q ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 37 Strand: + Start: 279 End: 389 ...................................................................................................................................................................................................................................................................................... M L S P K E S N K E K R L S S D C I G L H A F A F F C V G R E I Y L T G R ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 57 Strand: + Start: 331 End: 501 .......................................................................................................................................................................................................................................................................................................................................... M D C M H S H S F A S G E K S T L R G D R S A N A F F A V L Q S C E K M L P N G R P K D T E Q H R N R S L S F F Q ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 34 Strand: + Start: 423 End: 524 ...................................................................................................................................................................................................................................................................................................................................................................................................................................... M M R K D V T E W S P K R Y R A T S Q S L V I L F S I N Q V Q L H Y ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 60 Strand: + Start: 224 End: 532 ............................................................................................................................................................................................................................... M P E T E P I R P D P K K D I L T P N T L P K R I K Q R E T A F K R L H W T A C I R I L L R R E R N L P Y G A I G L R M ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 36 Strand: + Start: 698 End: 805 ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M T S L P A V L R N C L C R R K R K K A I Q R E K K N R M W I E A P R V ............................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 505 End: 837 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ M K Y N Y I I S P I S I K W L C A F I I L C V F P S G R S F S F Q D N K T L R A Y G N R V C G K N T T C N E M E V W R L ............................................................................................................................................................................................................................................................................................... Protein_Len: 55 Strand: + Start: 864 End: 1028 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M R K V K A V I S I G S Y Q K I K K G K V S S F S V N N I I F A V N F H V I Q S I V F H L D Y Q I H Y L F I L ................................................................................................ Protein_Len: 35 Strand: - Start: 1016 End: 1120 ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... R N M K Y S Y V W S L H L I I S K I I S I R S S C Y L G L I P M I V M .... Protein_Len: 56 Strand: - Start: 685 End: 852 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ V A Q R K V E N G A T S R F Q R Q R L F R F F A I W R S F F F R I H I S A G L T Y L L F H F V A K T H S V A T M ................................................................................................................................................................................................................................................................................ Protein_Len: 60 Strand: - Start: 627 End: 836 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Q L S I S T H L N F P K G N S R T A P L V G F S G K G F F V F F L S G V R F F S G F T S L L V L L I F C F I F F L R R M ................................................................................................................................................................................................................................................................................................ Protein_Len: 60 Strand: - Start: 560 End: 898 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... E S V A K A S S F S F F R D L A F F L V S H P Y F C W S Y L A F F S F C G E Y T L S G Y N L F L I L F T F A T I E I P M .................................................................................................................................................................................................................................. Protein_Len: 42 Strand: - Start: 377 End: 502 ........................................................................................................................................................................................................................................................................................................................................................................................ R V P R Y T Q S H R K Q R K A I M R F S T V S H D G L L Y R A V D C D S T I R K E M .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 53 Strand: - Start: 321 End: 479 ................................................................................................................................................................................................................................................................................................................................ A V A N S Q M C E C E K A D P S F D V K R P S L D A F A K K A T K C D H S F I N G F P R G F S V S C C R M ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 34 Strand: - Start: 272 End: 373 ............................................................................................................................................................................................................................................................................... G R I S E G F S D F L S F R S E L S Q M P S C A N A N K Q T P L S M ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 43 Strand: - Start: 223 End: 351 .............................................................................................................................................................................................................................. M G S V S G I L G S G F F S M K V G L V R G L L I L C L S V A K L R S C Q V A H M R M ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 34 Strand: - Start: 152 End: 253 ....................................................................................................................................................... I S Q Y L W V I Y K P K A G K L G K S D T T D V D R F C L R Y P G M ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... tgcaccggcctcccaaagccttggtttgaccaagctaaaaccatgccctgatcaaaccatatatttggcccaaactaaactatatagtttggttcaactaaactatatactttggtccgactaaactatatactttggtcgaaccaaactatatactttgataaagccaaactatatactttggttttgccccctttagacccttgctgtcagtagtgtctacatccctgaaacagagcctataaggcccgatccgaaaaaggacattttaacccctaatactctccccaaaagaatcaaacaaagagaaacggctttcaagcgactgcattggactgcatgcattcgcattcttttgcgtcgggagagaaatctaccttacggggcgataggtctgcgaatgccttttttgccgttttgcaatcatgcgaaaagatgttaccgaatggtcgcccaaaagataccgagcaacatcgcaatcgctcgttatccttttttcaataaatcaagtacaattacattattagcccgataagtataaaatggttatgtgcatttataatcttatgcgtatttccatcgggccggtcgttttcgtttcaagacaataaaacattaagagcttatggcaacagggtttgtggcaagaatacgacctgtaatgaaatggaagtgtggagattaaacggcttgccgtttgacctcgttgccggcagtactccgaaactgcctttgccgaagaaaacgaaaaaaagcgatccaacgcgaaaaaaagaaccgaatgtggatagaagcaccaagagtataaagcaaaaaatgaaaaacagccttcgtatgtgagactgccgtaattaaggaacaagatgagaaaagtaaaagctgttatctcaataggcagctatcagaaaataaaaaagggtaaagtttcatctttctctgtgaataatattatctttgcagtaaattttcatgttatacaaagcattgtgtttcatttagattatcaaatacattatctattcattttataactataaacccaactaagatgtaaaataatagattttatgatggaaattctactagaacagtaaaggcctaaaataggcataatcacaattaat Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ tgcaccggcctcccaaagccttggtttgaccaagctaaaaccatgccctgatcaaaccatatatttggcccaaactaaactatatagtttggttcaactaaactatatactttggtccgactaaactatatactttggtcgaaccaaactatatactttgataaagccaaactatatactttggttttgccccctttagacccttgctgtcagtagtgtctacatccctgaaacagagcctataaggcccgatccgaaaaaggacattttaacccctaatactctccccaaaagaatcaaacaaagagaaacggctttcaagcgactgcattggactgcatgcattcgcattcttttgcgtcgggagagaaatctaccttacggggcgataggtctgcgaatgccttttttgccgttttgcaatcatgcgaaaagatgttaccgaatggtcgcccaaaagataccgagcaacatcgcaatcgctcgttatccttttttcaataaatcaagtacaattacattattagcccgataagtataaaatggttatgtgcatttataatcttatgcgtatttccatcgggccggtcgttttcgtttcaagacaataaaacattaagagcttatggcaacagggtttgtggcaagaatacgacctgtaatgaaatggaagtgtggagattaaacggcttgccgtttgacctcgttgccggcagtactccgaaactgcctttgccgaagaaaacgaaaaaaagcgatccaacgcgaaaaaaagaaccgaatgtggatagaagcaccaagagtataaagcaaaaaatgaaaaacagccttcgtatgtgagactgccgtaattaaggaacaagatgagaaaagtaaaagctgttatctcaataggcagctatcagaaaataaaaaagggtaaagtttcatctttctctgtgaataatattatctttgcagtaaattttcatgttatacaaagcattgtgtttcatttagattatcaaatacattatctattcattttataactataaacccaactaagatgtaaaataatagattttatgatggaaattctactagaacagtaaaggcctaaaataggcataatcacaattaat Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 72 HP_score: -7.8 Tail_Score: -3.73775 Start: 80 End: 110 Full_Region: TTGGCCCAAACTAAA CTATATAGTTTGGT TCA ACTAAACTATATAC TTTGGTCCGACTAAA ...............................................................................CTATATAGTTTGGTTCAACTAAACTATATAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 78 HP_score: -11.3 Tail_Score: -2.84051 Start: 81 End: 109 Full_Region: TGGCCCAAACTAAAC TATATAGTTTGGT TCA ACTAAACTATATA CTTTGGTCCGACTAA ................................................................................TATATAGTTTGGTTCAACTAAACTATATA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 73 HP_score: -9.5 Tail_Score: -2.96873 Start: 83 End: 107 Full_Region: GCCCAAACTAAACTA TATAGTTTGGT TCA ACTAAACTATA TACTTTGGTCCGACT ..................................................................................TATAGTTTGGTTCAACTAAACTATA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 72 HP_score: -7.7 Tail_Score: -3.72576 Start: 103 End: 156 Full_Region: TTTGGTTCAACTAAA CTATATACTTTGGTCCGACTAAACT ATAT ACTTTGGTCGAACCAAACTATATAC TTTGATAAAGCCAAA ......................................................................................................CTATATACTTTGGTCCGACTAAACTATATACTTTGGTCGAACCAAACTATATAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ TransTerm Strand: - Conf: 74 HP_score: -7.7 Tail_Score: -3.90112 Start: 103 End: 156 Full_Region: tttggctttatcaaa gtatatagtttggttcgaccaaagt atat agtttagtcggaccaaagtatatag tttagttgaaccaaa ......................................................................................................gtatatagtttggttcgaccaaagtatatagtttagtcggaccaaagtatatag........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ TransTerm Strand: + Conf: 78 HP_score: -11.2 Tail_Score: -2.83403 Start: 104 End: 155 Full_Region: TTGGTTCAACTAAAC TATATACTTTGGTCCGACTAAACT ATAT ACTTTGGTCGAACCAAACTATATA CTTTGATAAAGCCAA .......................................................................................................TATATACTTTGGTCCGACTAAACTATATACTTTGGTCGAACCAAACTATATA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 79 HP_score: -11.2 Tail_Score: -2.93853 Start: 104 End: 155 Full_Region: ttggctttatcaaag tatatagtttggttcgaccaaagt atat agtttagtcggaccaaagtatata gtttagttgaaccaa .......................................................................................................tatatagtttggttcgaccaaagtatatagtttagtcggaccaaagtatata......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 73 HP_score: -9.4 Tail_Score: -3.02166 Start: 106 End: 153 Full_Region: ggctttatcaaagta tatagtttggttcgaccaaagt atat agtttagtcggaccaaagtata tagtttagttgaacc .........................................................................................................tatagtttggttcgaccaaagtatatagtttagtcggaccaaagtata........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 73 HP_score: -9.4 Tail_Score: -2.96695 Start: 106 End: 153 Full_Region: GGTTCAACTAAACTA TATACTTTGGTCCGACTAAACT ATAT ACTTTGGTCGAACCAAACTATA TACTTTGATAAAGCC .........................................................................................................TATACTTTGGTCCGACTAAACTATATACTTTGGTCGAACCAAACTATA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 65 HP_score: -5.7 Tail_Score: -4.12942 Start: 144 End: 184 Full_Region: TATACTTTGGTCGAA CCAAACTATATACTTTG ATAAAGC CAAACTATATACTTTGG TTTTGCCCCCTTTAG ...............................................................................................................................................CCAAACTATATACTTTGATAAAGCCAAACTATATACTTTGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ TransTerm Strand: + Conf: 57 HP_score: -2.1 Tail_Score: -4.21812 Start: 321 End: 350 Full_Region: GAGAAACGGCTTTCA AGCGACTGCAT TGGACTGC ATGCATTCGCA TTCTTTTGCGTCGGG ................................................................................................................................................................................................................................................................................................................................AGCGACTGCATTGGACTGCATGCATTCGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 54 HP_score: -5.6 Tail_Score: -3.12605 Start: 322 End: 349 Full_Region: AGAAACGGCTTTCAA GCGACTGCAT TGGACTGC ATGCATTCGC ATTCTTTTGCGTCGG .................................................................................................................................................................................................................................................................................................................................GCGACTGCATTGGACTGCATGCATTCGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 68 HP_score: -5.9 Tail_Score: -4.08064 Start: 460 End: 491 Full_Region: atttattgaaaaaag gataacgagcgat tgcgat gttgctcggtatc ttttgggcgaccatt ...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................gataacgagcgattgcgatgttgctcggtatc......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 49 HP_score: -3.0 Tail_Score: -3.65214 Start: 460 End: 491 Full_Region: AATGGTCGCCCAAAA GATACCGAGCAA CATCGCAA TCGCTCGTTATC CTTTTTTCAATAAAT ...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATACCGAGCAACATCGCAATCGCTCGTTATC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Find igs database================================================ Query_seq: PG0453:PG0456|PG0453:PG0456:hypothetical protein:PHP N-terminal domain protein:->->:496731..497854 1124 tgcaccggcctcccaaagccttggtttgaccaagctaaaaccatgccctgatcaaaccatatatttggcccaaactaaactatatagtttggttcaactaaactatatactttggtccgactaaactatatactttggtcgaaccaaactatatactttgataaagccaaactatatactttggttttgccccctttagacccttgctgtcagtagtgtctacatccctgaaacagagcctataaggcccgatccgaaaaaggacattttaacccctaatactctccccaaaagaatcaaacaaagagaaacggctttcaagcgactgcattggactgcatgcattcgcattcttttgcgtcgggagagaaatctaccttacggggcgataggtctgcgaatgccttttttgccgttttgcaatcatgcgaaaagatgttaccgaatggtcgcccaaaagataccgagcaacatcgcaatcgctcgttatccttttttcaataaatcaagtacaattacattattagcccgataagtataaaatggttatgtgcatttataatcttatgcgtatttccatcgggccggtcgttttcgtttcaagacaataaaacattaagagcttatggcaacagggtttgtggcaagaatacgacctgtaatgaaatggaagtgtggagattaaacggcttgccgtttgacctcgttgccggcagtactccgaaactgcctttgccgaagaaaacgaaaaaaagcgatccaacgcgaaaaaaagaaccgaatgtggatagaagcaccaagagtataaagcaaaaaatgaaaaacagccttcgtatgtgagactgccgtaattaaggaacaagatgagaaaagtaaaagctgttatctcaataggcagctatcagaaaataaaaaagggtaaagtttcatctttctctgtgaataatattatctttgcagtaaattttcatgttatacaaagcattgtgtttcatttagattatcaaatacattatctattcattttataactataaacccaactaagatgtaaaataatagattttatgatggaaattctactagaacagtaaaggcctaaaataggcataatcacaattaat Intra-Species Hit: Count: 5 Min: 1 Max: 1124 Len: 1124 Subject: NC_002950_PG0453_PG0456|hypothetical protein:PHP N-terminal domain protein|POSITIVE:POSITIVE|[496731,497854]|1124 HSP 1 e-value: 0.0 bit: 1524.0 Len: 811 Query Start:1 Query End:811 Subject Strand: POSITIVE Subject Start: 1 Subject End: 811 tgcaccggcctcccaaagccttggtttgaccaagctaaaaccatgccctgatcaaaccatatatttggcccaaactaaactatatagtttggttcaactaaactatatactttggtccgactaaactatatactttggtcgaaccaaactatatactttgataaagccaaactatatactttggttttgccccctttagacccttgctgtcagtagtgtctacatccctgaaacagagcctataaggcccgatccgaaaaaggacattttaacccctaatactctccccaaaagaatcaaacaaagagaaacggctttcaagcgactgcattggactgcatgcattcgcattcttttgcgtcgggagagaaatctaccttacggggcgataggtctgcgaatgccttttttgccgttttgcaatcatgcgaaaagatgttaccgaatggtcgcccaaaagataccgagcaacatcgcaatcgctcgttatccttttttcaataaatcaagtacaattacattattagcccgataagtataaaatggttatgtgcatttataatcttatgcgtatttccatcgggccggtcgttttcgtttcaagacaataaaacattaagagcttatggcaacagggtttgtggcaagaatacgacctgtaatgaaatggaagtgtggagattaaacggcttgccgtttgacctcgttgccggcagtactccgaaactgcctttgccgaagaaaacgnnnnnnngcgatccaacgcgnnnnnnngaaccgaatgtggatagaagcaccaagagtataaagc......................................................................................................................................................................................................................................................................................................................... tgcaccggcctcccaaagccttggtttgaccaagctaaaaccatgccctgatcaaaccatatatttggcccaaactaaactatatagtttggttcaactaaactatatactttggtccgactaaactatatactttggtcgaaccaaactatatactttgataaagccaaactatatactttggttttgccccctttagacccttgctgtcagtagtgtctacatccctgaaacagagcctataaggcccgatccgaaaaaggacattttaacccctaatactctccccaaaagaatcaaacaaagagaaacggctttcaagcgactgcattggactgcatgcattcgcattcttttgcgtcgggagagaaatctaccttacggggcgataggtctgcgaatgccttttttgccgttttgcaatcatgcgaaaagatgttaccgaatggtcgcccaaaagataccgagcaacatcgcaatcgctcgttatccttttttcaataaatcaagtacaattacattattagcccgataagtataaaatggttatgtgcatttataatcttatgcgtatttccatcgggccggtcgttttcgtttcaagacaataaaacattaagagcttatggcaacagggtttgtggcaagaatacgacctgtaatgaaatggaagtgtggagattaaacggcttgccgtttgacctcgttgccggcagtactccgaaactgcctttgccgaagaaaacgaaaaaaagcgatccaacgcgaaaaaaagaaccgaatgtggatagaagcaccaagagtataaagc......................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 1.0E-168 bit: 595.0 Len: 300 Query Start:825 Query End:1124 Subject Strand: POSITIVE Subject Start: 825 Subject End: 1124 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cagccttcgtatgtgagactgccgtaattaaggaacaagatgagaaaagtaaaagctgttatctcaataggcagctatcagaaaataaaaaagggtaaagtttcatctttctctgtgaataatattatctttgcagtaaattttcatgttatacaaagcattgtgtttcatttagattatcaaatacattatctattcattttataactataaacccaactaagatgtaaaataatagattttatgatggaaattctactagaacagtaaaggcctaaaataggcataatcacaattaat ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cagccttcgtatgtgagactgccgtaattaaggaacaagatgagaaaagtaaaagctgttatctcaataggcagctatcagaaaataaaaaagggtaaagtttcatctttctctgtgaataatattatctttgcagtaaattttcatgttatacaaagcattgtgtttcatttagattatcaaatacattatctattcattttataactataaacccaactaagatgtaaaataatagattttatgatggaaattctactagaacagtaaaggcctaaaataggcataatcacaattaat HSP 3 e-value: 5.0E-8 bit: 61.9 Len: 75 Query Start:81 Query End:155 Subject Strand: NEGATIVE Subject Start: 81 Subject End: 155 ................................................................................tatatagtttggttcaactaaactatatactttggtccgactaaactatatactttggtcgaaccaaactatata......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ................................................................................tatatagtttggttcgaccaaagtatatagtttagtcggaccaaagtatatagtttagttgaaccaaactatata......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: NC_002950_PG0711_PG0712|hypothetical protein:hypothetical protein|POSITIVE:NEGATIVE|[766342,766873]|532 HSP 1 e-value: 3.0E-43 bit: 178.0 Len: 122 Query Start:71 Query End:192 Subject Strand: POSITIVE Subject Start: 160 Subject End: 281 ......................................................................caaactaaactatatagtttggttcaactaaactatatactttggtccgactaaactatatactttggtcgaaccaaactatatactttgataaagccaaactatatactttggttttgccc.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ......................................................................caaactaaactatatagtttggttgaactaaactatatagtttggtcaaaccgaactatatactttggtcgaaccaaactatatactttgatgaaaccaaactatatactttggttttgccc.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: NC_002950_PG0281_PG0282|ABC transporter, permease protein, putative:ABC transporter, ATP-binding protein|NEGATIVE:NEGATIVE|[316114,316333]|220 HSP 1 e-value: 1.0E-23 bit: 113.0 Len: 121 Query Start:77 Query End:197 Subject Strand: POSITIVE Subject Start: 43 Subject End: 163 ............................................................................aaactatatagtttggttcaactaaactatatactttggtccgactaaactatatactttggtcgaaccaaactatatactttgataaagccaaactatatactttggttttgcccccttt............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ............................................................................aaactatatactttggtctgactaaactatatagtttggtctgaccgaactatatactttggttgaaccaaactatatactttggtttggtcaaactatatagtttggtttagcccccttt............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 3.0E-12 bit: 75.8 Len: 110 Query Start:53 Query End:162 Subject Strand: NEGATIVE Subject Start: 40 Subject End: 149 ....................................................caaaccatatatttggcccaaactaaactatatagtttggttcaactaaactatatactttggtccgactaaactatatactttggtcgaaccaaactatatactttgat.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ....................................................caaactatatagtttgaccaaaccaaagtatatagtttggttcaaccaaagtatatagttcggtcagaccaaactatatagtttagtcagaccaaagtatatagtttgat.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. HSP 3 e-value: 2.0E-7 bit: 60.0 Len: 66 Query Start:74 Query End:139 Subject Strand: POSITIVE Subject Start: 63 Subject End: 128 .........................................................................actaaactatatagtttggttcaactaaactatatactttggtccgactaaactatatactttggt......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... .........................................................................actaaactatatagtttggtctgaccgaactatatactttggttgaaccaaactatatactttggt......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: NC_002950_PG0555_PG0556|DNA-binding protein, histone-like family:hypothetical protein|NEGATIVE:POSITIVE|[612325,613417]|1093 HSP 1 e-value: 1.0E-20 bit: 103.0 Len: 112 Query Start:51 Query End:162 Subject Strand: NEGATIVE Subject Start: 224 Subject End: 335 ..................................................atcaaaccatatatttggcccaaactaaactatatagtttggttcaactaaactatatactttggtccgactaaactatatactttggtcgaaccaaactatatactttgat.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ..................................................atcaaactatatactttggcaaaactaaactatatagtttggtgagactaaactatatactttggttcaaccaaactatatactttggtgagaccaaactatatagtttgat.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. HSP 2 e-value: 5.0E-20 bit: 101.0 Len: 107 Query Start:77 Query End:183 Subject Strand: NEGATIVE Subject Start: 226 Subject End: 332 ............................................................................aaactatatagtttggttcaactaaactatatactttggtccgactaaactatatactttggtcgaaccaaactatatactttgataaagccaaactatatactttg............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ............................................................................aaactatatactttggcaaaactaaactatatagtttggtgagactaaactatatactttggttcaaccaaactatatactttggtgagaccaaactatatagtttg............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. HSP 3 e-value: 7.0E-10 bit: 67.9 Len: 86 Query Start:100 Query End:185 Subject Strand: NEGATIVE Subject Start: 247 Subject End: 332 ...................................................................................................aaactatatactttggtccgactaaactatatactttggtcgaaccaaactatatactttgataaagccaaactatatactttggt........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ...................................................................................................aaactatatactttggcaaaactaaactatatagtttggtgagactaaactatatactttggttcaaccaaactatatactttggt........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: NC_002950_PG1436_PG1439|ATPase, putative:hypothetical protein|POSITIVE:NEGATIVE|[1523815,1524674]|860 HSP 1 e-value: 2.0E-10 bit: 69.9 Len: 63 Query Start:685 Query End:747 Subject Strand: NEGATIVE Subject Start: 115 Subject End: 177 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................aacggcttgccgtttgacctcgttgccggcagtactccgaaactgcctttgccgaagaaaacg......................................................................................................................................................................................................................................................................................................................................................................................... ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................aacggcttgtcgcttgaccttgttgcccgcagtacaacgaaactacctttgccgaagaaaacg......................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 7.0E-7 bit: 58.0 Len: 49 Query Start:565 Query End:613 Subject Strand: NEGATIVE Subject Start: 253 Subject End: 301 ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ttatgcgtatttccatcgggccggtcgttttcgtttcaagacaataaaa............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ttatgcgtctttccgtcgggtcggtcgttttcgtttcgaggcaataaaa............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Inter-species Hit: Count: 2 Min: 565 Max: 747 Len: 183 Subject: pint_PI0401_PI0402|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[367168,368031]|864 HSP 1 e-value: 2.0E-10 bit: 69.9 Len: 63 Query Start:685 Query End:747 Subject Strand: POSITIVE Subject Start: 685 Subject End: 747 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................aacggcttgccgtttgacctcgttgccggcagtactccgaaactgcctttgccgaagaaaacg......................................................................................................................................................................................................................................................................................................................................................................................... ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................aacggcttgtcgcttgaccttgttgcccgcagtacaacgaaactacctttgccgaagaaaacg......................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 7.0E-7 bit: 58.0 Len: 49 Query Start:565 Query End:613 Subject Strand: POSITIVE Subject Start: 561 Subject End: 609 ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ttatgcgtatttccatcgggccggtcgttttcgtttcaagacaataaaa............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ttatgcgtctttccgtcgggtcggtcgttttcgtttcgaggcaataaaa............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: pint_PI0282_PI0283|hypothetical protein:Zn-dependent peptidase|POSITIVE:POSITIVE|[266887,267693]|807 HSP 1 e-value: 2.0E-7 bit: 60.0 Len: 38 Query Start:565 Query End:602 Subject Strand: POSITIVE Subject Start: 95 Subject End: 132 ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ttatgcgtatttccatcgggccggtcgttttcgtttca.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ttatgcgtctttccgtcgggccggtcgttttcgtttca.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 7.0E-7 bit: 58.0 Len: 37 Query Start:647 Query End:683 Subject Strand: POSITIVE Subject Start: 178 Subject End: 214 ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................agaatacgacctgtaatgaaatggaagtgtggagatt......................................................................................................................................................................................................................................................................................................................................................................................................................................................... ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................agaatactacctgcaatgaaatggaagtgtggagatt......................................................................................................................................................................................................................................................................................................................................................................................................................................................... Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UUAUGCGUAUUUCCAUCGGGCCGGUCGUUUUCGUUUCAAGACAAUAAAACAUUAAGAGCUUAUGGCAACAGGGUUUGUGGCAAGAAUACGACCUGUAAUGAAAUGGAAGUGUGGAGAUUAAACGGCUUGCCGUUUGACCUCGUUGCCGGCAGUACUCCGAAACUGCCUUUGCCGAAGAAAACG ....((.(((((((((...((.((((((.((((((....))).......(((...((((((.((....)))))))))))....))).)))))).))......)))))))))..(((.((((((((....)))))))).)))...)).((((((........))))))................ (-51.60) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ CGUUUUCUUCGGCAAAGGCAGUUUCGGAGUACUGCCGGCAACGAGGUCAAACGGCAAGCCGUUUAAUCUCCACACUUCCAUUUCAUUACAGGUCGUAUUCUUGCCACAAACCCUGUUGCCAUAAGCUCUUAAUGUUUUAUUGUCUUGAAACGAAAACGACCGGCCCGAUGGAAAUACGCAUAA .((((((.(((((...((((((........))))))......(((((.((((((....)))))).)))))....................((((((.(((..((.(((.....))).))..............((((((......))))))))).)))))).).)))).))))))........ (-50.20) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 423 119 71 227 167 NC_002950:PG1460|5end_hypothetical_protein_1539960..1540190_POSITIVE 411 167 123 223 170 NC_002950:PG0986|5end_hypothetical_protein_1047426..1047656_POSITIVE 404 180 132 73 3 NC_002950:PG0159|5end_endopeptidase_PepO_183164..183394_NEGATIVE 403 173 139 171 129 NC_002950:PG1580|5end_hypothetical_protein_1657499..1657729_POSITIVE 401 179 140 203 149 NC_002950:PG0171|5end_5'-nucleotidase_family_protein_191724..191954_POSITIVE 393 170 122 186 122 NC_002950:PG2200|5end_TPR_domain_protein_2308807..2309037_NEGATIVE 387 158 123 65 28 NC_002950:PG0488|5end_Holliday_junction_DNA_helicase_RuvB_528169..528399_POSITIVE 385 166 123 67 10 NC_002950:PG0422|5end_hypothetical_protein_462302..462532_NEGATIVE 380 160 112 188 134 NC_002950:PG2125|5end_transcriptional_regulator,_AraC_family_2232254..2232484_NEGATIVE 380 170 123 75 22 NC_002950:PG2086|5end_hypothetical_protein_2186571..2186801_POSITIVE 377 159 122 229 193 NC_002950:PG0319|5end_hypothetical_protein_352949..353179_POSITIVE 376 169 124 65 14 NC_002950:PG1470|5end_hypothetical_protein_1548121..1548351_POSITIVE 374 168 123 212 155 NC_002950:PG2029|5end_hypothetical_protein_2126543..2126773_POSITIVE 369 169 123 52 2 NC_002950:PG1497|5end_DNA-binding_protein,_histone-like_family_1574085..1574315_POSITIVE 369 159 111 224 163 NC_002950:PG0140|5end_hypothetical_protein_163858..164088_NEGATIVE 367 167 124 195 151 NC_002950:PG1285|5end_glucosamine-6-phosphate_deaminase_1362894..1363124_POSITIVE 365 157 121 154 123 NC_002950:PG1966|5end_hypothetical_protein_2056924..2057154_NEGATIVE 363 160 111 194 148 NC_002950:PG0143|5end_hydrolase,_carbon-nitrogen_family_166625..166855_NEGATIVE 361 166 123 213 158 NC_002950:PG1248|5end_hypothetical_protein_1326532..1326762_NEGATIVE 361 165 123 68 37 NC_002950:PG0802|5end_alpha_keto_acid_dehydrogenase_complex,_E3_component,_lipoamide_dehydrogenase_859722..859952_NEGATIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 393 170 122 150 86 NC_002950:PG2201|3end_peptide_deformylase_2308843..2308993_NEGATIVE 385 168 125 119 70 NC_002950:PG0799|3end_hypothetical_protein_854599..854749_POSITIVE 381 167 121 135 86 NC_002950:PG1675|3end_hypothetical_protein_1760360..1760510_POSITIVE 371 165 123 145 99 NC_002950:PG0443|3end_hemagglutinin-related_protein_483147..483297_POSITIVE 370 170 123 92 32 NC_002950:PG2102|3end_immunoreactive_61_kDa_antigen_PG91_2211424..2211574_NEGATIVE 366 177 131 124 89 NC_002950:PG0361|3end_hypothetical_protein_395481..395631_POSITIVE 363 180 132 126 78 NC_002950:PG1392|3end_rod_shape-determining_protein_RodA,_putative_1472959..1473109_NEGATIVE 361 165 123 63 32 NC_002950:PG0803|3end_glucosamine-6-phosphate_deaminase_859727..859877_NEGATIVE 359 168 122 130 83 NC_002950:PG1594|3end_ComEC/Rec2-related_protein_1672052..1672202_NEGATIVE 356 159 111 146 109 NC_002950:PG1816|3end_NAD(P)H_dehydrogenase,_quinone_family,_putative_1911430..1911580_NEGATIVE 353 159 111 80 20 NC_002950:PG1112|3end_hypothetical_protein_1185571..1185721_POSITIVE 348 169 124 131 96 NC_002950:PG0222|3end_DNA-binding_protein,_histone-like_family_255913..256063_NEGATIVE 338 166 122 138 98 NC_002950:PG1589|3end_dihydropteroate_synthase_1666593..1666743_NEGATIVE 336 59 13 71 25 NC_002950:PG1723|3end_ribosomal_protein_S20_1813403..1813553_POSITIVE 334 154 111 108 56 NC_002950:PG2127|3end_hypothetical_protein_2233109..2233259_NEGATIVE 334 178 131 114 60 NC_002950:PG1782|3end_hypothetical_protein_1871961..1872111_POSITIVE 333 167 124 55 11 NC_002950:PG1007|3end_transcriptional_regulator,_GntR_family_1066518..1066668_NEGATIVE 332 160 111 81 9 NC_002950:PG0211|3end_cobalamin_biosynthesis_protein_CbiG/precorrin-4_C11-methyltransferase_245966..246116_NEGATIVE 331 149 105 148 106 NC_002950:PG1859|3end_glycerate_kinase_family_protein_1957174..1957324_NEGATIVE 330 177 131 107 41 NC_002950:PG0204|3end_hypothetical_protein_240262..240412_NEGATIVE