Origin IGS:
tatgtgtgatcggtctatgtcaagatgctatccttttgcatgtgattcgatgtagctgcacgattcctctctgcaatctcggaccggatcgaggactatcgttgtgctgaggtgtccgaataggagcctattcgggcttgatgtcaggtgatggggcatagccggtagtttatggatgtgtggcatactaatataatactctcttttttcagttaattgctcgcttccaatacacggggggggggatccattgttcggagcaatgcttttcggaagacaaaattagccaaatcttttttctcctgccaacgactgttgtgcttgtacttgaaaaacgggatgtgcacagagacaaaaattctgcaaaaaaattggcagaaaaaaagaacgtctacctttgccataaatttgagcaattgacctgatttgtattagaagatttttagctgcagcacttattacgaatcatacaattactcgcaaatgtctgtagaagatgagaatttcttttaataagaatcaggcatatcagtatttctaactaatataagcaagctata
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9
tatagcttgcttatattagttagaaatactgatatgcctgattcttattaaaagaaattctcatcttctacagacatttgcgagtaattgtatgattcgtaataagtgctgcagctaaaaatcttctaatacaaatcaggtcaattgctcaaatttatggcaaaggtagacgttctttttttctgccaatttttttgcagaatttttgtctctgtgcacatcccgtttttcaagtacaagcacaacagtcgttggcaggagaaaaaagatttggctaattttgtcttccgaaaagcattgctccgaacaatggatccccccccccgtgtattggaagcgagcaattaactgaaaaaagagagtattatattagtatgccacacatccataaactaccggctatgccccatcacctgacatcaagcccgaataggctcctattcggacacctcagcacaacgatagtcctcgatccggtccgagattgcagagaggaatcgtgcagctacatcgaatcacatgcaaaaggatagcatcttgacatagaccgatcacacata

Mask Tandem Repeat Region ================================================
tatgtgtgatcggtctatgtcaagatgctatccttttgcatgtgattcgatgtagctgcacgattcctctctgcaatctcggaccggatcgaggactatcgttgtgctgaggtgtccgaataggagcctattcgggcttgatgtcaggtgatggggcatagccggtagtttatggatgtgtggcatactaatataatactctcttttttcagttaattgctcgcttccaatacacggggggggggatccattgttcggagcaatgcttttcggaagacaaaattagccaaatcttttttctcctgccaacgactgttgtgcttgtacttgaaaaacgggatgtgcacagagacaaaaattctgcaaaaaaattggcagaaaaaaagaacgtctacctttgccataaatttgagcaattgacctgatttgtattagaagatttttagctgcagcacttattacgaatcatacaattactcgcaaatgtctgtagaagatgagaatttcttttaataagaatcaggcatatcagtatttctaactaatataagcaagctata

Find is-nt database================================================
Query_seq: PG0371:PG0373|PG0371:PG0373:hypothetical protein:hypothetical protein:->->:404285..404844 560
tatgtgtgatcggtctatgtcaagatgctatccttttgcatgtgattcgatgtagctgcacgattcctctctgcaatctcggaccggatcgaggactatcgttgtgctgaggtgtccgaataggagcctattcgggcttgatgtcaggtgatggggcatagccggtagtttatggatgtgtggcatactaatataatactctcttttttcagttaattgctcgcttccaatacacggggggggggatccattgttcggagcaatgcttttcggaagacaaaattagccaaatcttttttctcctgccaacgactgttgtgcttgtacttgaaaaacgggatgtgcacagagacaaaaattctgcaaaaaaattggcagaaaaaaagaacgtctacctttgccataaatttgagcaattgacctgatttgtattagaagatttttagctgcagcacttattacgaatcatacaattactcgcaaatgtctgtagaagatgagaatttcttttaataagaatcaggcatatcagtatttctaactaatataagcaagctata
Intra-Species Hit: Count: 0
Inter-species Hit: Count: 0

Find is-aa database================================================
Query_seq: PG0371:PG0373|PG0371:PG0373:hypothetical protein:hypothetical protein:->->:404285..404844 560
tatgtgtgatcggtctatgtcaagatgctatccttttgcatgtgattcgatgtagctgcacgattcctctctgcaatctcggaccggatcgaggactatcgttgtgctgaggtgtccgaataggagcctattcgggcttgatgtcaggtgatggggcatagccggtagtttatggatgtgtggcatactaatataatactctcttttttcagttaattgctcgcttccaatacacggggggggggatccattgttcggagcaatgcttttcggaagacaaaattagccaaatcttttttctcctgccaacgactgttgtgcttgtacttgaaaaacgggatgtgcacagagacaaaaattctgcaaaaaaattggcagaaaaaaagaacgtctacctttgccataaatttgagcaattgacctgatttgtattagaagatttttagctgcagcacttattacgaatcatacaattactcgcaaatgtctgtagaagatgagaatttcttttaataagaatcaggcatatcagtatttctaactaatataagcaagctata
Intra-Species Hit: Count: 0
Inter-species Hit: Count: 0

Find nr database================================================
Query_seq: PG0371:PG0373|PG0371:PG0373:hypothetical protein:hypothetical protein:->->:404285..404844 560
tatgtgtgatcggtctatgtcaagatgctatccttttgcatgtgattcgatgtagctgcacgattcctctctgcaatctcggaccggatcgaggactatcgttgtgctgaggtgtccgaataggagcctattcgggcttgatgtcaggtgatggggcatagccggtagtttatggatgtgtggcatactaatataatactctcttttttcagttaattgctcgcttccaatacacggggggggggatccattgttcggagcaatgcttttcggaagacaaaattagccaaatcttttttctcctgccaacgactgttgtgcttgtacttgaaaaacgggatgtgcacagagacaaaaattctgcaaaaaaattggcagaaaaaaagaacgtctacctttgccataaatttgagcaattgacctgatttgtattagaagatttttagctgcagcacttattacgaatcatacaattactcgcaaatgtctgtagaagatgagaatttcttttaataagaatcaggcatatcagtatttctaactaatataagcaagctata
Intra-Species Hit: Count: 0
Inter-species Hit: Count: 0

tatgtgtgatcggtctatgtcaagatgctatccttttgcatgtgattcgatgtagctgcacgattcctctctgcaatctcggaccggatcgaggactatcgttgtgctgaggtgtccgaataggagcctattcgggcttgatgtcaggtgatggggcatagccggtagtttatggatgtgtggcatactaatataatactctcttttttcagttaattgctcgcttccaatacacggggggggggatccattgttcggagcaatgcttttcggaagacaaaattagccaaatcttttttctcctgccaacgactgttgtgcttgtacttgaaaaacgggatgtgcacagagacaaaaattctgcaaaaaaattggcagaaaaaaagaacgtctacctttgccataaatttgagcaattgacctgatttgtattagaagatttttagctgcagcacttattacgaatcatacaattactcgcaaatgtctgtagaagatgagaatttcttttaataagaatcaggcatatcagtatttctaactaatataagcaagctata
Predict ORF larger than 30AA ================================================
Protein_Len: 34	Strand: +	Start: 6	End: 107
..... M  I  G  L  C  Q  D  A  I  L  L  H  V  I  R  C  S  C  T  I  P  L  C  N  L  G  P  D  R  G  L  S  L  C .....................................................................................................................................................................................................................................................................................................................................................................................................................................................................
Protein_Len: 31	Strand: +	Start: 56	End: 148
....................................................... M  H  D  S  S  L  Q  S  R  T  G  S  R  T  I  V  V  L  R  C  P  N  R  S  L  F  G  L  D  V  R ............................................................................................................................................................................................................................................................................................................................................................................................................................
Protein_Len: 60	Strand: +	Start: 217	End: 417
........................................................................................................................................................................................................................ M  L  A  S  N  T  R  G  G  G  S  I  V  R  S  N  A  F  R  K  T  K  L  A  K  S  F  F  S  C  Q  R  L  L  C  L  Y  L  K  N  G  M  C  T  E  T  K  I  L  Q  K  N  W  Q  K  K  R  T  S  T ...............................................................................................................................................
Protein_Len: 60	Strand: +	Start: 216	End: 422
....................................................................................................................................................................................................................... M  A  R  F  Q  Y  T  G  G  G  I  H  C  S  E  Q  C  F  S  E  D  K  I  S  Q  I  F  F  L  L  P  T  T  V  V  L  V  L  E  K  R  D  V  H  R  D  K  N  S  A  K  K  L  A  E  K  K  N  V  Y ..........................................................................................................................................
Protein_Len: 30	Strand: -	Start: 446	End: 535
............................................................................................................................................................................................................................................................................................................................................................................................................................................................. S  C  C  K  N  R  I  M  C  N  S  A  F  T  Q  L  L  H  S  N  R  K  I  L  I  L  C  I  L  M .........................
Protein_Len: 58	Strand: -	Start: 286	End: 459
............................................................................................................................................................................................................................................................................................. G  F  R  K  E  G  A  L  S  Q  Q  A  Q  V  Q  F  V  P  H  A  C  L  C  F  N  Q  L  F  I  P  L  F  F  S  R  R  G  K  G  Y  I  Q  A  I  S  R  I  Q  I  L  L  N  K  A  A  A  S  M .....................................................................................................
Protein_Len: 60	Strand: -	Start: 216	End: 416
....................................................................................................................................................................................................................... P  P  P  D  M  T  R  L  L  A  K  R  F  V  F  N  A  L  D  K  K  E  Q  W  R  S  N  H  K  Y  K  F  F  P  I  H  V  S  V  F  I  R  C  F  F  Q  C  F  F  L  V  D  V  K  A  M  F  K  L  M ................................................................................................................................................
Protein_Len: 48	Strand: -	Start: 212	End: 355
................................................................................................................................................................................................................... N  I  A  R  K  W  Y  V  P  P  P  I  W  Q  E  S  C  H  K  E  S  S  L  I  L  W  I  K  K  R  R  G  V  V  T  T  S  T  S  S  F  R  S  T  C  L  S  M .............................................................................................................................................................................................................
Protein_Len: 60	Strand: -	Start: 31	End: 264
.............................. P  D  L  V  I  T  T  S  L  H  G  F  L  L  R  N  P  S  S  T  L  H  H  P  M  A  P  L  K  H  I  H  P  M  S  I  Y  Y  E  R  K  E  T  L  Q  E  S  G  I  C  P  P  P  S  G  N  N  P  A  M ........................................................................................................................................................................................................................................................................................................
Protein_Len: 33	Strand: -	Start: 23	End: 121
...................... S  A  I  R  K  C  T  I  R  H  L  Q  V  I  G  R  Q  L  R  P  G  S  R  P  S  D  N  H  Q  P  T  R  M .......................................................................................................................................................................................................................................................................................................................................................................................................................................................

tatgtgtgatcggtctatgtcaagatgctatccttttgcatgtgattcgatgtagctgcacgattcctctctgcaatctcggaccggatcgaggactatcgttgtgctgaggtgtccgaataggagcctattcgggcttgatgtcaggtgatggggcatagccggtagtttatggatgtgtggcatactaatataatactctcttttttcagttaattgctcgcttccaatacacggggggggggatccattgttcggagcaatgcttttcggaagacaaaattagccaaatcttttttctcctgccaacgactgttgtgcttgtacttgaaaaacgggatgtgcacagagacaaaaattctgcaaaaaaattggcagaaaaaaagaacgtctacctttgccataaatttgagcaattgacctgatttgtattagaagatttttagctgcagcacttattacgaatcatacaattactcgcaaatgtctgtagaagatgagaatttcttttaataagaatcaggcatatcagtatttctaactaatataagcaagctata
Predict Promoter with matrix: RpoD-15 score > 80================================================

Predict Promoter with matrix: RpoD-16 score > 80================================================

Predict Promoter with matrix: RpoD-17 score > 80================================================
PromScan Matrix: RpoD-17	Strand: +	Score: 81	Start: 168	End: 197
.......................................................................................................................................................................GTTTATGGATGTGTGGCATACTAATATAAT...........................................................................................................................................................................................................................................................................................................................................................................

Predict Promoter with matrix: RpoD-18 score > 80================================================

Predict Promoter with matrix: RpoD-19 score > 80================================================

Predict Promoter with matrix: RpoN score > 80================================================

tatgtgtgatcggtctatgtcaagatgctatccttttgcatgtgattcgatgtagctgcacgattcctctctgcaatctcggaccggatcgaggactatcgttgtgctgaggtgtccgaataggagcctattcgggcttgatgtcaggtgatggggcatagccggtagtttatggatgtgtggcatactaatataatactctcttttttcagttaattgctcgcttccaatacacggggggggggatccattgttcggagcaatgcttttcggaagacaaaattagccaaatcttttttctcctgccaacgactgttgtgcttgtacttgaaaaacgggatgtgcacagagacaaaaattctgcaaaaaaattggcagaaaaaaagaacgtctacctttgccataaatttgagcaattgacctgatttgtattagaagatttttagctgcagcacttattacgaatcatacaattactcgcaaatgtctgtagaagatgagaatttcttttaataagaatcaggcatatcagtatttctaactaatataagcaagctata
Predict TransTerm conf > 70================================================
TransTerm Strand: +	Conf: 86	HP_score: -11.8	Tail_Score: -3.272	Start: 114	End: 137	Full_Region: TCGTTGTGCTGAGGT GTCCGAATAG GAGC CTATTCGGGC TTGATGTCAGGTGAT
.................................................................................................................GTCCGAATAGGAGCCTATTCGGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................
TransTerm Strand: -	Conf: 81	HP_score: -5.9	Tail_Score: -5.07275	Start: 359	End: 380	Full_Region: gtagacgttcttttt ttctgccaa tttt tttgcagaa tttttgtctctgtgc
......................................................................................................................................................................................................................................................................................................................................................................ttctgccaatttttttgcagaa....................................................................................................................................................................................

Find igs database================================================
Query_seq: PG0371:PG0373|PG0371:PG0373:hypothetical protein:hypothetical protein:->->:404285..404844 560
tatgtgtgatcggtctatgtcaagatgctatccttttgcatgtgattcgatgtagctgcacgattcctctctgcaatctcggaccggatcgaggactatcgttgtgctgaggtgtccgaataggagcctattcgggcttgatgtcaggtgatggggcatagccggtagtttatggatgtgtggcatactaatataatactctcttttttcagttaattgctcgcttccaatacacggggggggggatccattgttcggagcaatgcttttcggaagacaaaattagccaaatcttttttctcctgccaacgactgttgtgcttgtacttgaaaaacgggatgtgcacagagacaaaaattctgcaaaaaaattggcagaaaaaaagaacgtctacctttgccataaatttgagcaattgacctgatttgtattagaagatttttagctgcagcacttattacgaatcatacaattactcgcaaatgtctgtagaagatgagaatttcttttaataagaatcaggcatatcagtatttctaactaatataagcaagctata
Intra-Species Hit: Count: 2	Min: 1	Max: 560	Len: 560
Subject: NC_002950_PG0371_PG0373|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[404285,404844]|560
HSP  1	e-value: 0.0	bit: 640.0	Len: 353	Query Start:1	Query End:353	Subject Strand: POSITIVE	Subject Start: 1	Subject End: 353
tatgtgtgatcggtctatgtcaagatgctatccttttgcatgtgattcgatgtagctgcacgattcctctctgcaatctcggaccggatcgaggactatcgttgtgctgaggtgtccgaataggagcctattcgggcttgatgtcaggtgatggggcatagccggtagtttatggatgtgtggcatactaatataatactctcttttttcagttaattgctcgcttccaatacacnnnnnnnnnnatccattgttcggagcaatgcttttcggaagacaaaattagccaaatcttttttctcctgccaacgactgttgtgcttgtacttgaaaaacgggatgtgcacagagac...............................................................................................................................................................................................................
tatgtgtgatcggtctatgtcaagatgctatccttttgcatgtgattcgatgtagctgcacgattcctctctgcaatctcggaccggatcgaggactatcgttgtgctgaggtgtccgaataggagcctattcgggcttgatgtcaggtgatggggcatagccggtagtttatggatgtgtggcatactaatataatactctcttttttcagttaattgctcgcttccaatacacggggggggggatccattgttcggagcaatgcttttcggaagacaaaattagccaaatcttttttctcctgccaacgactgttgtgcttgtacttgaaaaacgggatgtgcacagagac...............................................................................................................................................................................................................
HSP  2	e-value: 3.0E-94	bit: 347.0	Len: 175	Query Start:386	Query End:560	Subject Strand: POSITIVE	Subject Start: 386	Subject End: 560
.................................................................................................................................................................................................................................................................................................................................................................................................gaacgtctacctttgccataaatttgagcaattgacctgatttgtattagaagatttttagctgcagcacttattacgaatcatacaattactcgcaaatgtctgtagaagatgagaatttcttttaataagaatcaggcatatcagtatttctaactaatataagcaagctata
.................................................................................................................................................................................................................................................................................................................................................................................................gaacgtctacctttgccataaatttgagcaattgacctgatttgtattagaagatttttagctgcagcacttattacgaatcatacaattactcgcaaatgtctgtagaagatgagaatttcttttaataagaatcaggcatatcagtatttctaactaatataagcaagctata

Subject: NC_002950_PG1573_PG1574|transcriptional regulator, Crp family:hypothetical protein|NEGATIVE:NEGATIVE|[1652259,1652550]|292
HSP  1	e-value: 5.0E-68	bit: 260.0	Len: 190	Query Start:46	Query End:235	Subject Strand: NEGATIVE	Subject Start: 100	Subject End: 292
.............................................ttcgatgtagctgcacgattcctctctgcaatctcggaccggatcgaggactatcgttg---tgctgaggtgtccgaataggagcctattcgggcttgatgtcaggtgatggggcatagccggtagtttatggatgtgtggcatactaatataatactctcttttttcagttaattgctcgcttccaatacac.....................................................................................................................................................................................................................................................................................................................................
.............................................ttcgatgtagctgcacgattcctctctacaatctcggatcggatcgaggactgtcgctgctgtgctgaaggatccgaataggagcctgttcgggcttgatgtcaggtgatggggcatagtcggtagtttatggatgtgtggcatattaatataatactctcttttttcaattaattgctcacttccaatacac.....................................................................................................................................................................................................................................................................................................................................
HSP  2	e-value: 1.0E-22	bit: 109.0	Len: 87	Query Start:252	Query End:338	Subject Strand: NEGATIVE	Subject Start: 2	Subject End: 87
...........................................................................................................................................................................................................................................................tgttcggagcaatgcttttcggaagacaaaattagccaaatcttttttctcctgccaacgactgttgtgcttgtacttgaaaaacgg..............................................................................................................................................................................................................................
...........................................................................................................................................................................................................................................................tgttcggagcaatgcttttcggaagacaaaattagtcaattc-tttttctcttgccaatgactgctgtgcttatacttgaaaaacgg..............................................................................................................................................................................................................................

Inter-species Hit: Count: 0

Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================
UAUGUGUGAUCGGUCUAUGUCAAGAUGCUAUCCUUUUGCAUGUGAUUCGAUGUAGCUGCACGAUUCCUCUCUGCAAUCUCGGACCGGAUCGAGGACUAUCGUUGUGCUGAGGUGUCCGAAUAGGAGCCUAUUCGGGCUUGAUGUCAGGUGAUGGGGCAUAGCCGGUAGUUUAUGGAUGUGUGGCAUACUAAUAUAAUACUCUCUUUUUUCAGUUAAUUGCUCGCUUCCAAUACACGGGGGGGGGGAUCCAUUGUUCGGAGCAAUGCUUUUCGGAAGACAAAAUUAGCCAAAUCUUUUUUCUCCUGCCAACGACUGUUGUGCUUGUACUUGAAAAACGGGAUGUGCACAGAGACAAAAAUUCUGCAAAAAAAUUGGCAGAAAAAAAGAACGUCUACCUUUGCCAUAAAUUUGAGCAAUUGACCUGAUUUGUAUUAGAAGAUUUUUAGCUGCAGCACUUAUUACGAAUCAUACAAUUACUCGCAAAUGUCUGUAGAAGAUGAGAAUUUCUUUUAAUAAGAAUCAGGCAUAUCAGUAUUUCUAACUAAUAUAAGCAAGCUAUA
........(((((.(((((((..(((.(..(((..(((((.(.((.(((.(((....)))))).))..)..)))))....)))..).))).........(((..(.((((.((((((((((((....))))))))))...)).)))))..))).)))))))))))).(((((((...((..((.(((((.((((.................(((((((((((.............((.(((((..(..((((((.....))))))....((....))...................)..))))).))...(((..((((((.(((.((((.....))))))).)))))).........((((((..........)))))).........)))..................)))))))))))(((((((.((((((((((((((((.((((((.((......(((.............))).....))))))))....))))))..)))))))))).)))))))..)))).))))).))..))...)))))))........ (-150.92)

Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================
UAUAGCUUGCUUAUAUUAGUUAGAAAUACUGAUAUGCCUGAUUCUUAUUAAAAGAAAUUCUCAUCUUCUACAGACAUUUGCGAGUAAUUGUAUGAUUCGUAAUAAGUGCUGCAGCUAAAAAUCUUCUAAUACAAAUCAGGUCAAUUGCUCAAAUUUAUGGCAAAGGUAGACGUUCUUUUUUUCUGCCAAUUUUUUUGCAGAAUUUUUGUCUCUGUGCACAUCCCGUUUUUCAAGUACAAGCACAACAGUCGUUGGCAGGAGAAAAAAGAUUUGGCUAAUUUUGUCUUCCGAAAAGCAUUGCUCCGAACAAUGGAUCCCCCCCCCCGUGUAUUGGAAGCGAGCAAUUAACUGAAAAAAGAGAGUAUUAUAUUAGUAUGCCACACAUCCAUAAACUACCGGCUAUGCCCCAUCACCUGACAUCAAGCCCGAAUAGGCUCCUAUUCGGACACCUCAGCACAACGAUAGUCCUCGAUCCGGUCCGAGAUUGCAGAGAGGAAUCGUGCAGCUACAUCGAAUCACAUGCAAAAGGAUAGCAUCUUGACAUAGACCGAUCACACAUA
....((((((.(((((((((.(....)))))))))).....(((((.....))))).......................))))))..((((((((((((........(((((.(((...................((((((.((((((((......((((((..((.(((((........((((((.((....)).))))))....))))))).))).)))...(((((((........((.((((....)))))).(((((...((((((.....)))))).))))).)))))))...(((((((...((((..........))))...)))).)))))))))))..........................(((((((..................))).))))......))))))......(.((((((((....)))))))).).....)))...(((((..(((((..(.(((((...))))).)..))))))))))))))).....)))))))..)))))...(((....(((......)))...)))....... (-132.49)

Find mRNA Target Using  Conserved IGS================================================
5'END mRNA Target Prediction===================================
Score	srna_start	srna_end	target_start	tegart_end	seq_id
420	150	103	194	143	NC_002950:PG1058|5end_OmpA_family_protein_1124034..1124264_POSITIVE
414	168	122	192	121	NC_002950:PG1959|5end_ribosomal_protein_L33_2048405..2048635_NEGATIVE
408	94	52	207	154	NC_002950:PG0910|5end_FHA_domain_protein_973666..973896_NEGATIVE
407	106	61	211	169	NC_002950:PG2075|5end_hypothetical_protein_2176466..2176696_NEGATIVE
405	268	221	127	63	NC_002950:PG0605|5end_hypothetical_protein_662406..662636_NEGATIVE
405	168	121	212	171	NC_002950:PG0091|5end_transporter,_putative_107400..107630_NEGATIVE
401	165	122	71	22	NC_002950:PG1769|5end_hypothetical_protein_1856607..1856837_POSITIVE
400	88	41	112	49	NC_002950:PG0532|5end_hypothetical_protein_582148..582378_NEGATIVE
387	93	54	226	183	NC_002950:PG0987|5end_hypothetical_protein_1048002..1048232_POSITIVE
384	168	123	182	134	NC_002950:PG1794|5end_DNA_polymerase_type_I_1885978..1886208_POSITIVE
383	166	122	86	46	NC_002950:PG0326|5end_hypothetical_protein_360974..361204_NEGATIVE
382	110	62	46	4	NC_002950:PG1726|5end_PDZ_domain_protein_1815281..1815511_POSITIVE
380	70	23	59	11	NC_002950:PG1326|5end_hemagglutinin,_putative_1404033..1404263_POSITIVE
380	120	71	224	172	NC_002950:PG0356|5end_hypothetical_protein_390611..390841_POSITIVE
374	273	233	128	89	NC_002950:PG1247|5end_3-dehydroquinate_synthase_1324444..1324674_POSITIVE
374	148	102	73	29	NC_002950:PG0289|5end_hypothetical_protein_322860..323090_POSITIVE
368	97	54	55	14	NC_002950:PG1566|5end_glutamyl-tRNA_synthetase_1647401..1647631_NEGATIVE
368	262	222	226	184	NC_002950:PG0737|5end_hypothetical_protein_786188..786418_POSITIVE
367	277	236	142	98	NC_002950:PG0949|5end_hypothetical_protein_1008686..1008916_POSITIVE
366	118	73	114	62	NC_002950:PG1388|5end_hypothetical_protein_1470889..1471119_NEGATIVE

3'END mRNA Target Prediction===================================
Score	srna_start	srna_end	target_start	tegart_end	seq_id
771	70	21	92	41	NC_002950:PG0610|3end_hypothetical_protein_663604..663754_NEGATIVE
430	168	121	127	69	NC_002950:PG0897|3end_alpha-amylase_family_protein_960868..961018_NEGATIVE
427	119	77	44	4	NC_002950:PG1773|3end_PAP2_superfamily_protein_1861232..1861382_POSITIVE
408	94	52	82	29	NC_002950:PG0912|3end_polysaccharide_transport_protein,_putative_973791..973941_NEGATIVE
405	268	221	82	18	NC_002950:PG0606|3end_hypothetical_protein_662451..662601_NEGATIVE
401	165	122	66	17	NC_002950:PG1768|3end_magnesium_chelatase,_subunit_D/I_family_1856682..1856832_POSITIVE
392	110	63	111	68	NC_002950:PG1675|3end_hypothetical_protein_1760360..1760510_POSITIVE
384	168	123	132	84	NC_002950:PG1793|3end_1,4-alpha-glucan_branching_enzyme_1886008..1886158_POSITIVE
377	276	236	122	76	NC_002950:PG2199|3end_ABC_transporter,_ATP-binding_protein,_putative_2304786..2304936_NEGATIVE
374	273	233	113	74	NC_002950:PG1246|3end_alanyl-tRNA_synthetase_1324509..1324659_POSITIVE
374	148	102	143	99	NC_002950:PG0288|3end_lipoprotein,_putative_323010..323160_POSITIVE
372	154	113	88	48	NC_002950:PG1794|3end_DNA_polymerase_type_I_1888838..1888988_POSITIVE
372	93	55	117	69	NC_002950:PG1392|3end_rod_shape-determining_protein_RodA,_putative_1472959..1473109_NEGATIVE
367	277	236	123	79	NC_002950:PG0948|3end_AMP_nucleosidase_1008747..1008897_POSITIVE
366	118	73	133	81	NC_002950:PG1389|3end_DNA-binding_protein,_histone-like_family_1470870..1471020_NEGATIVE
364	269	223	91	33	NC_002950:PG1681|3end_glycogen_debranching_enzyme,_archaeal_type,_putative_1768468..1768618_POSITIVE
362	150	106	81	35	NC_002950:PG2158|3end_hypothetical_protein_2264473..2264623_POSITIVE
359	127	84	144	96	NC_002950:PG1012|3end_tRNA-i(6)A37_modification_enzyme_MiaB_1070089..1070239_NEGATIVE
359	128	83	141	93	NC_002950:PG0361|3end_hypothetical_protein_395481..395631_POSITIVE
358	120	71	40	2	NC_002950:PG0884|3end_hypothetical_protein_947809..947959_POSITIVE