Origin IGS:
tgtgattgggggctttgagtcagtaggggaggggagtagttctctcccgtataaaaccacgtggtgcaaatttaggacaaaggcaaagaataaagcggagcatagccgcagaccaatccgatacggcacactcaaaatccgactgaacaatcgatacatgagaagtatcctttccttttcttcgcacattttcgttcgcgatttacgaaccgtaaacgagcagattgcggcgtgtgttttcctgaaaaacacgaaccaaaactatttcgttctcgcgcgtaaattttttccttcccgcaccaaaacgaaaaaaatctcgcgccacgtttttaggggcgttgggtggaacaattctcgagcgtaaactcgattttctccccgttctctctcagctcttcggaatgtcggtattctgcctggacgccgatccggagcggtaaacgatgggtcgaatggctgctgctgtgcctgcataaaaatgctaaatagacctttacaataaaagaaaaatgtacctttgttgcgataggcatacgaaaattcgggcaaaatgccgagtatgccggt
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9
accggcatactcggcattttgcccgaattttcgtatgcctatcgcaacaaaggtacatttttcttttattgtaaaggtctatttagcatttttatgcaggcacagcagcagccattcgacccatcgtttaccgctccggatcggcgtccaggcagaataccgacattccgaagagctgagagagaacggggagaaaatcgagtttacgctcgagaattgttccacccaacgcccctaaaaacgtggcgcgagatttttttcgttttggtgcgggaaggaaaaaatttacgcgcgagaacgaaatagttttggttcgtgtttttcaggaaaacacacgccgcaatctgctcgtttacggttcgtaaatcgcgaacgaaaatgtgcgaagaaaaggaaaggatacttctcatgtatcgattgttcagtcggattttgagtgtgccgtatcggattggtctgcggctatgctccgctttattctttgcctttgtcctaaatttgcaccacgtggttttatacgggagagaactactcccctcccctactgactcaaagcccccaatcaca

Mask Tandem Repeat Region ================================================
tgtgattgggggctttgagtcagtaggggaggggagtagttctctcccgtataaaaccacgtggtgcaaatttaggacaaaggcaaagaataaagcggagcatagccgcagaccaatccgatacggcacactcaaaatccgactgaacaatcgatacatgagaagtatcctttccttttcttcgcacattttcgttcgcgatttacgaaccgtaaacgagcagattgcggcgtgtgttttcctgaaaaacacgaaccaaaactatttcgttctcgcgcgtaaattttttccttcccgcaccaaaacgaaaaaaatctcgcgccacgtttttaggggcgttgggtggaacaattctcgagcgtaaactcgattttctccccgttctctctcagctcttcggaatgtcggtattctgcctggacgccgatccggagcggtaaacgatgggtcgaatggctgctgctgtgcctgcataaaaatgctaaatagacctttacaataaaagaaaaatgtacctttgttgcgataggcatacgaaaattcgggcaaaatgccgagtatgccggt

Find is-nt database================================================
Query_seq: PG0317:PG0319|PG0317:PG0319:peptidase, M49 family:hypothetical protein:<-->:352522..353088 567
tgtgattgggggctttgagtcagtaggggaggggagtagttctctcccgtataaaaccacgtggtgcaaatttaggacaaaggcaaagaataaagcggagcatagccgcagaccaatccgatacggcacactcaaaatccgactgaacaatcgatacatgagaagtatcctttccttttcttcgcacattttcgttcgcgatttacgaaccgtaaacgagcagattgcggcgtgtgttttcctgaaaaacacgaaccaaaactatttcgttctcgcgcgtaaattttttccttcccgcaccaaaacgaaaaaaatctcgcgccacgtttttaggggcgttgggtggaacaattctcgagcgtaaactcgattttctccccgttctctctcagctcttcggaatgtcggtattctgcctggacgccgatccggagcggtaaacgatgggtcgaatggctgctgctgtgcctgcataaaaatgctaaatagacctttacaataaaagaaaaatgtacctttgttgcgataggcatacgaaaattcgggcaaaatgccgagtatgccggt
Intra-Species Hit: Count: 0
Inter-species Hit: Count: 0

Find is-aa database================================================
Query_seq: PG0317:PG0319|PG0317:PG0319:peptidase, M49 family:hypothetical protein:<-->:352522..353088 567
tgtgattgggggctttgagtcagtaggggaggggagtagttctctcccgtataaaaccacgtggtgcaaatttaggacaaaggcaaagaataaagcggagcatagccgcagaccaatccgatacggcacactcaaaatccgactgaacaatcgatacatgagaagtatcctttccttttcttcgcacattttcgttcgcgatttacgaaccgtaaacgagcagattgcggcgtgtgttttcctgaaaaacacgaaccaaaactatttcgttctcgcgcgtaaattttttccttcccgcaccaaaacgaaaaaaatctcgcgccacgtttttaggggcgttgggtggaacaattctcgagcgtaaactcgattttctccccgttctctctcagctcttcggaatgtcggtattctgcctggacgccgatccggagcggtaaacgatgggtcgaatggctgctgctgtgcctgcataaaaatgctaaatagacctttacaataaaagaaaaatgtacctttgttgcgataggcatacgaaaattcgggcaaaatgccgagtatgccggt
Intra-Species Hit: Count: 0
Inter-species Hit: Count: 0

Find nr database================================================
Query_seq: PG0317:PG0319|PG0317:PG0319:peptidase, M49 family:hypothetical protein:<-->:352522..353088 567
tgtgattgggggctttgagtcagtaggggaggggagtagttctctcccgtataaaaccacgtggtgcaaatttaggacaaaggcaaagaataaagcggagcatagccgcagaccaatccgatacggcacactcaaaatccgactgaacaatcgatacatgagaagtatcctttccttttcttcgcacattttcgttcgcgatttacgaaccgtaaacgagcagattgcggcgtgtgttttcctgaaaaacacgaaccaaaactatttcgttctcgcgcgtaaattttttccttcccgcaccaaaacgaaaaaaatctcgcgccacgtttttaggggcgttgggtggaacaattctcgagcgtaaactcgattttctccccgttctctctcagctcttcggaatgtcggtattctgcctggacgccgatccggagcggtaaacgatgggtcgaatggctgctgctgtgcctgcataaaaatgctaaatagacctttacaataaaagaaaaatgtacctttgttgcgataggcatacgaaaattcgggcaaaatgccgagtatgccggt
Intra-Species Hit: Count: 0
Inter-species Hit: Count: 0

tgtgattgggggctttgagtcagtaggggaggggagtagttctctcccgtataaaaccacgtggtgcaaatttaggacaaaggcaaagaataaagcggagcatagccgcagaccaatccgatacggcacactcaaaatccgactgaacaatcgatacatgagaagtatcctttccttttcttcgcacattttcgttcgcgatttacgaaccgtaaacgagcagattgcggcgtgtgttttcctgaaaaacacgaaccaaaactatttcgttctcgcgcgtaaattttttccttcccgcaccaaaacgaaaaaaatctcgcgccacgtttttaggggcgttgggtggaacaattctcgagcgtaaactcgattttctccccgttctctctcagctcttcggaatgtcggtattctgcctggacgccgatccggagcggtaaacgatgggtcgaatggctgctgctgtgcctgcataaaaatgctaaatagacctttacaataaaagaaaaatgtacctttgttgcgataggcatacgaaaattcgggcaaaatgccgagtatgccggt
Predict ORF larger than 30AA ================================================
Protein_Len: 31	Strand: +	Start: 51	End: 143
.................................................. M  K  P  R  G  A  N  L  G  Q  R  Q  R  I  K  R  S  I  A  A  D  Q  S  D  T  A  H  S  K  S  D ........................................................................................................................................................................................................................................................................................................................................................................................................................................
Protein_Len: 53	Strand: +	Start: 121	End: 279
........................................................................................................................ M  R  H  T  Q  N  P  T  E  Q  S  I  H  E  K  Y  P  F  L  F  F  A  H  F  R  S  R  F  T  N  R  K  R  A  D  C  G  V  C  F  P  E  K  H  E  P  K  L  F  R  S  R  A ................................................................................................................................................................................................................................................................................................
Protein_Len: 60	Strand: +	Start: 2	End: 361
. M  I  G  G  F  E  S  V  G  E  G  S  S  S  L  P  Y  K  T  T  W  C  K  F  R  T  K  A  K  N  K  A  E  H  S  R  R  P  I  R  Y  G  T  L  K  I  R  L  N  N  R  Y  M  R  S  I  L  S  F  S ..............................................................................................................................................................................................................
Protein_Len: 58	Strand: +	Start: 264	End: 437
....................................................................................................................................................................................................................................................................... M  S  F  S  R  V  N  F  F  L  P  A  P  K  R  K  K  S  R  A  T  F  L  G  A  L  G  G  T  I  L  E  R  K  L  D  F  L  P  V  L  S  Q  L  F  G  M  S  V  F  C  L  D  A  D  P  E  R ..................................................................................................................................
Protein_Len: 48	Strand: +	Start: 343	End: 486
...................................................................................................................................................................................................................................................................................................................................................... M  E  Q  F  S  S  V  N  S  I  F  S  P  F  S  L  S  S  S  E  C  R  Y  S  A  W  T  P  I  R  S  G  K  R  W  V  E  W  L  L  L  C  L  H  K  N  A  K .................................................................................
Protein_Len: 30	Strand: +	Start: 410	End: 499
......................................................................................................................................................................................................................................................................................................................................................................................................................... M  L  P  G  R  R  S  G  A  V  N  D  G  S  N  G  C  C  C  A  C  I  K  M  L  N  R  P  L  Q ....................................................................
Protein_Len: 60	Strand: -	Start: 333	End: 533
............................................................................................................................................................................................................................................................................................................................................ E  L  T  F  E  I  K  E  G  N  E  R  L  E  E  S  H  R  Y  E  A  Q  V  G  I  R  L  P  L  R  H  T  S  H  S  S  S  H  R  C  L  F  A  L  Y  V  K  V  I  F  S  F  H  V  K  T  A  I  P  M ..................................
Protein_Len: 60	Strand: -	Start: 265	End: 561
........................................................................................................................................................................................................................................................................ E  R  E  A  R  R  F  T  P  I  R  G  P  R  R  D  P  A  T  F  S  P  D  F  P  Q  Q  Q  A  Q  M  F  I  S  F  L  G  K  C  Y  F  F  F  T  G  K  N  R  Y  A  Y  S  F  E  P  L  I  G  L  M ......
Protein_Len: 49	Strand: -	Start: 206	End: 352
............................................................................................................................................................................................................. S  G  Y  V  L  L  N  R  R  T  N  E  Q  F  V  R  V  L  V  I  E  N  E  R  T  F  K  K  R  G  A  G  F  R  F  F  D  R  A  V  N  K  P  A  N  P  P  V  M .......................................................................................................................................................................................................................
Protein_Len: 50	Strand: -	Start: 135	End: 284
...................................................................................................................................... F  G  V  S  C  D  I  C  S  F  Y  G  K  R  K  K  A  C  K  R  E  R  N  V  F  R  L  R  A  S  Q  P  T  H  K  G  S  F  C  S  G  F  S  N  R  E  R  A  Y  M ...........................................................................................................................................................................................................................................................................................
Protein_Len: 60	Strand: -	Start: 23	End: 202
...................... Y  P  L  P  T  T  R  E  R  I  F  G  R  P  A  F  K  P  C  L  C  L  I  F  R  L  M  A  A  S  W  D  S  V  A  C  E  F  D  S  Q  V  I  S  V  H  S  T  D  K  G  K  R  R  V  N  E  N  A  M .............................................................................................................................................................................................................................................................................................................................................................................
Protein_Len: 60	Strand: -	Start: 1	End: 252
 L  V  F  A  F  F  L  A  S  C  L  R  L  G  I  R  Y  P  V  S  L  I  R  S  F  L  R  Y  M  L  L  I  R  E  K  E  E  C  M  K  T  R  S  K  R  V  T  F  S  C  I  A  A  H  T  K  R  F  F  M ...........................................................................................................................................................................................................................................................................................................................

tgtgattgggggctttgagtcagtaggggaggggagtagttctctcccgtataaaaccacgtggtgcaaatttaggacaaaggcaaagaataaagcggagcatagccgcagaccaatccgatacggcacactcaaaatccgactgaacaatcgatacatgagaagtatcctttccttttcttcgcacattttcgttcgcgatttacgaaccgtaaacgagcagattgcggcgtgtgttttcctgaaaaacacgaaccaaaactatttcgttctcgcgcgtaaattttttccttcccgcaccaaaacgaaaaaaatctcgcgccacgtttttaggggcgttgggtggaacaattctcgagcgtaaactcgattttctccccgttctctctcagctcttcggaatgtcggtattctgcctggacgccgatccggagcggtaaacgatgggtcgaatggctgctgctgtgcctgcataaaaatgctaaatagacctttacaataaaagaaaaatgtacctttgttgcgataggcatacgaaaattcgggcaaaatgccgagtatgccggt
Predict Promoter with matrix: RpoD-15 score > 80================================================

Predict Promoter with matrix: RpoD-16 score > 80================================================

Predict Promoter with matrix: RpoD-17 score > 80================================================

Predict Promoter with matrix: RpoD-18 score > 80================================================

Predict Promoter with matrix: RpoD-19 score > 80================================================

Predict Promoter with matrix: RpoN score > 80================================================

tgtgattgggggctttgagtcagtaggggaggggagtagttctctcccgtataaaaccacgtggtgcaaatttaggacaaaggcaaagaataaagcggagcatagccgcagaccaatccgatacggcacactcaaaatccgactgaacaatcgatacatgagaagtatcctttccttttcttcgcacattttcgttcgcgatttacgaaccgtaaacgagcagattgcggcgtgtgttttcctgaaaaacacgaaccaaaactatttcgttctcgcgcgtaaattttttccttcccgcaccaaaacgaaaaaaatctcgcgccacgtttttaggggcgttgggtggaacaattctcgagcgtaaactcgattttctccccgttctctctcagctcttcggaatgtcggtattctgcctggacgccgatccggagcggtaaacgatgggtcgaatggctgctgctgtgcctgcataaaaatgctaaatagacctttacaataaaagaaaaatgtacctttgttgcgataggcatacgaaaattcgggcaaaatgccgagtatgccggt
Predict TransTerm conf > 70================================================
TransTerm Strand: -	Conf: 49	HP_score: -4.1	Tail_Score: -3.19339	Start: 265	End: 310	Full_Region: gtggcgcgagatttt tttcgttttggtgcgggaa ggaaaaaa tttacgcgcgagaacgaaa tagttttggttcgtg
........................................................................................................................................................................................................................................................................tttcgttttggtgcgggaaggaaaaaatttacgcgcgagaacgaaa.................................................................................................................................................................................................................................................................
TransTerm Strand: +	Conf: 70	HP_score: -4.7	Tail_Score: -4.40572	Start: 355	End: 370	Full_Region: TGGGTGGAACAATTC TCGAG CGTAAA CTCGA TTTTCTCCCCGTTCT
..................................................................................................................................................................................................................................................................................................................................................................TCGAGCGTAAACTCGA.....................................................................................................................................................................................................

Find igs database================================================
Query_seq: PG0317:PG0319|PG0317:PG0319:peptidase, M49 family:hypothetical protein:<-->:352522..353088 567
tgtgattgggggctttgagtcagtaggggaggggagtagttctctcccgtataaaaccacgtggtgcaaatttaggacaaaggcaaagaataaagcggagcatagccgcagaccaatccgatacggcacactcaaaatccgactgaacaatcgatacatgagaagtatcctttccttttcttcgcacattttcgttcgcgatttacgaaccgtaaacgagcagattgcggcgtgtgttttcctgaaaaacacgaaccaaaactatttcgttctcgcgcgtaaattttttccttcccgcaccaaaacgaaaaaaatctcgcgccacgtttttaggggcgttgggtggaacaattctcgagcgtaaactcgattttctccccgttctctctcagctcttcggaatgtcggtattctgcctggacgccgatccggagcggtaaacgatgggtcgaatggctgctgctgtgcctgcataaaaatgctaaatagacctttacaataaaagaaaaatgtacctttgttgcgataggcatacgaaaattcgggcaaaatgccgagtatgccggt
Intra-Species Hit: Count: 1	Min: 1	Max: 567	Len: 567
Subject: NC_002950_PG0317_PG0319|peptidase, M49 family:hypothetical protein|NEGATIVE:POSITIVE|[352522,353088]|567
HSP  1	e-value: 0.0	bit: 1082.0	Len: 567	Query Start:1	Query End:567	Subject Strand: POSITIVE	Subject Start: 1	Subject End: 567
tgtgattgggggctttgagtcagtaggggaggggagtagttctctcccgtataaaaccacgtggtgcaaatttaggacaaaggcaaagaataaagcggagcatagccgcagaccaatccgatacggcacactcaaaatccgactgaacaatcgatacatgagaagtatcctttccttttcttcgcacattttcgttcgcgatttacgaaccgtaaacgagcagattgcggcgtgtgttttcctgaaaaacacgaaccaaaactatttcgttctcgcgcgtaaattttttccttcccgcaccaaaacgnnnnnnntctcgcgccacgtttttaggggcgttgggtggaacaattctcgagcgtaaactcgattttctccccgttctctctcagctcttcggaatgtcggtattctgcctggacgccgatccggagcggtaaacgatgggtcgaatggctgctgctgtgcctgcataaaaatgctaaatagacctttacaataaaagaaaaatgtacctttgttgcgataggcatacgaaaattcgggcaaaatgccgagtatgccggt
tgtgattgggggctttgagtcagtaggggaggggagtagttctctcccgtataaaaccacgtggtgcaaatttaggacaaaggcaaagaataaagcggagcatagccgcagaccaatccgatacggcacactcaaaatccgactgaacaatcgatacatgagaagtatcctttccttttcttcgcacattttcgttcgcgatttacgaaccgtaaacgagcagattgcggcgtgtgttttcctgaaaaacacgaaccaaaactatttcgttctcgcgcgtaaattttttccttcccgcaccaaaacgaaaaaaatctcgcgccacgtttttaggggcgttgggtggaacaattctcgagcgtaaactcgattttctccccgttctctctcagctcttcggaatgtcggtattctgcctggacgccgatccggagcggtaaacgatgggtcgaatggctgctgctgtgcctgcataaaaatgctaaatagacctttacaataaaagaaaaatgtacctttgttgcgataggcatacgaaaattcgggcaaaatgccgagtatgccggt

Inter-species Hit: Count: 0

Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================
UGUGAUUGGGGGCUUUGAGUCAGUAGGGGAGGGGAGUAGUUCUCUCCCGUAUAAAACCACGUGGUGCAAAUUUAGGACAAAGGCAAAGAAUAAAGCGGAGCAUAGCCGCAGACCAAUCCGAUACGGCACACUCAAAAUCCGACUGAACAAUCGAUACAUGAGAAGUAUCCUUUCCUUUUCUUCGCACAUUUUCGUUCGCGAUUUACGAACCGUAAACGAGCAGAUUGCGGCGUGUGUUUUCCUGAAAAACACGAACCAAAACUAUUUCGUUCUCGCGCGUAAAUUUUUUCCUUCCCGCACCAAAACGAAAAAAAUCUCGCGCCACGUUUUUAGGGGCGUUGGGUGGAACAAUUCUCGAGCGUAAACUCGAUUUUCUCCCCGUUCUCUCUCAGCUCUUCGGAAUGUCGGUAUUCUGCCUGGACGCCGAUCCGGAGCGGUAAACGAUGGGUCGAAUGGCUGCUGCUGUGCCUGCAUAAAAAUGCUAAAUAGACCUUUACAAUAAAAGAAAAAUGUACCUUUGUUGCGAUAGGCAUACGAAAAUUCGGGCAAAAUGCCGAGUAUGCCGGU
.......(((((((..(((......((((((..((...(((((..(((((.(((((..(((((((((.......((...((((.(((((((...(((((((...(((((((.(...((...(((((........((((((((.((((....(((.....((((((.........)))))).)))......)))).))).))))).....)))))...))...).)))))))..(((((((.....)))))))................)))).)))......))))))))))).))..........((......))..))))))))))))))...)))..))..))))).....(((((......)))))))..)))))).....)))..)))))))(((.(((((((((((.((((((((.(((((((((...((.....)).))))))....)))...((.(((((((((((....))))...........(..(((((((.............)))))))..).)))))))))....)))))))).)))))))).))).))).. (-168.24)

Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================
ACCGGCAUACUCGGCAUUUUGCCCGAAUUUUCGUAUGCCUAUCGCAACAAAGGUACAUUUUUCUUUUAUUGUAAAGGUCUAUUUAGCAUUUUUAUGCAGGCACAGCAGCAGCCAUUCGACCCAUCGUUUACCGCUCCGGAUCGGCGUCCAGGCAGAAUACCGACAUUCCGAAGAGCUGAGAGAGAACGGGGAGAAAAUCGAGUUUACGCUCGAGAAUUGUUCCACCCAACGCCCCUAAAAACGUGGCGCGAGAUUUUUUUCGUUUUGGUGCGGGAAGGAAAAAAUUUACGCGCGAGAACGAAAUAGUUUUGGUUCGUGUUUUUCAGGAAAACACACGCCGCAAUCUGCUCGUUUACGGUUCGUAAAUCGCGAACGAAAAUGUGCGAAGAAAAGGAAAGGAUACUUCUCAUGUAUCGAUUGUUCAGUCGGAUUUUGAGUGUGCCGUAUCGGAUUGGUCUGCGGCUAUGCUCCGCUUUAUUCUUUGCCUUUGUCCUAAAUUUGCACCACGUGGUUUUAUACGGGAGAGAACUACUCCCCUCCCCUACUGACUCAAAGCCCCCAAUCACA
...((((((((((((.....).))))......)))))))....((((((((((((......(((((......)))))........((((....)))).(((..((((..((((...(((....)))...((((.(((((..(((((..(...((((((.(((((.((((...((((((.((((((..(((..(((..((((((....))))))......)))..)))...............(((((((((((((..(((((((((.(((((..((........))..))))).))))))))).)))))))....((((((((...)))))))).))))))..))).))).....)))))).....(((((..........)))))......))))..(((((.......))))).........))))))))))).)..)))))..))))).))))....)))).))))..)))........)))))))))........))).....((((((......(((((.(........).)))))...((.......)).....)))))). (-172.40)

Find mRNA Target Using  Conserved IGS================================================
5'END mRNA Target Prediction===================================
Score	srna_start	srna_end	target_start	tegart_end	seq_id
1063	50	1	141	92	NC_002950:PG0317|5end_peptidase,_M49_family_352431..352661_NEGATIVE
727	339	291	91	43	NC_002950:PG2064|5end_hypothetical_protein_2160550..2160780_POSITIVE
725	320	271	108	59	NC_002950:PG0174|5end_pyridine_nucleotide-disulphide_oxidoreductase_family_protein_197628..197858_NEGATIVE
686	339	291	127	79	NC_002950:PG1980|5end_hypothetical_protein_2067930..2068160_NEGATIVE
686	337	291	103	57	NC_002950:PG1799|5end_hypothetical_protein_1894499..1894729_POSITIVE
563	340	292	92	46	NC_002950:PG0313|5end_hypothetical_protein_347366..347596_POSITIVE
527	310	265	191	146	NC_002950:PG0081|5end_hypothetical_protein_93805..94035_POSITIVE
471	470	422	81	37	NC_002950:PG1091|5end_DHH_subfamily_1_protein_1157017..1157247_POSITIVE
459	349	301	61	2	NC_002950:PG0524|5end_hypothetical_protein_568599..568829_POSITIVE
439	49	1	76	35	NC_002950:PG0281|5end_ABC_transporter,_permease_protein,_putative_316023..316253_NEGATIVE
431	438	392	213	156	NC_002950:PG1964|5end_bacterial_sugar_transferase_2052910..2053140_POSITIVE
428	60	11	82	29	NC_002950:PG1888|5end_hypothetical_protein_1985596..1985826_POSITIVE
417	347	301	159	112	NC_002950:PG0662|5end_hypothetical_protein_709867..710097_POSITIVE
416	340	292	197	138	NC_002950:PG0132|5end_hypothetical_protein_152879..153109_POSITIVE
416	469	422	61	7	NC_002950:PG0006|5end_MATE_efflux_family_protein_6332..6562_NEGATIVE
413	464	423	42	6	NC_002950:PG1022|5end_hypothetical_protein_1083537..1083767_POSITIVE
411	460	412	164	100	NC_002950:PG0753|5end_protease_798301..798531_POSITIVE
410	335	292	119	78	NC_002950:PG1617|5end_hypothetical_protein_1697755..1697985_NEGATIVE
401	399	356	190	134	NC_002950:PG2114|5end_hypothetical_protein_2224158..2224388_NEGATIVE
399	465	422	210	158	NC_002950:PG1226|5end_peptidyl-prolyl_cis-trans_isomerase,_cyclophilin-type_1303264..1303494_POSITIVE

3'END mRNA Target Prediction===================================
Score	srna_start	srna_end	target_start	tegart_end	seq_id
479	467	423	151	115	NC_002950:PG1961|3end_hypothetical_protein_2048886..2049036_NEGATIVE
456	339	292	72	18	NC_002950:PG0542|3end_hypothetical_protein_595377..595527_NEGATIVE
436	333	296	94	57	NC_002950:PG0732|3end_hypothetical_protein_783018..783168_POSITIVE
428	60	11	85	32	NC_002950:PG1887|3end_rhodanese-like_domain_protein_1985679..1985829_POSITIVE
401	458	413	136	73	NC_002950:PG1757|3end_hypothetical_protein_1843931..1844081_NEGATIVE
395	438	392	138	78	NC_002950:PG2099|3end_ATP-dependent_RNA_helicase,_DEAD/DEAH_box_family_2206649..2206799_NEGATIVE
394	470	422	142	99	NC_002950:PG1975|3end_hemagglutinin_protein_HagC_2064350..2064500_POSITIVE
394	470	422	142	99	NC_002950:PG1972|3end_hemagglutinin_protein_HagB_2061203..2061353_POSITIVE
392	460	414	64	11	NC_002950:PG0959|3end_ATP-binding_protein,_Mrp/Nbp35_family_1020023..1020173_NEGATIVE
391	468	422	109	40	NC_002950:PG1593|3end_shikimate_kinase_1672143..1672293_POSITIVE
387	449	404	148	94	NC_002950:PG0671|3end_iron_compound_ABC_transporter,_permease_protein_723038..723188_POSITIVE
385	470	423	82	26	NC_002950:PG1619|3end_biotin_synthesis_protein_BioC,_putative_1699415..1699565_POSITIVE
381	470	421	87	30	NC_002950:PG0997|3end_transcriptional_regulator,_putative_1057012..1057162_POSITIVE
380	450	402	72	7	NC_002950:PG1366|3end_UDP-N-acetylglucosamine_1-carboxyvinyltransferase_1446076..1446226_NEGATIVE
379	45	4	44	12	NC_002950:PG2010|3end_phosphomannomutase,_putative_2100952..2101102_POSITIVE
379	470	423	68	13	NC_002950:PG0144|3end_hypothetical_protein_166643..166793_NEGATIVE
378	470	421	105	53	NC_002950:PG1024|3end_hypothetical_protein_1086876..1087026_POSITIVE
376	450	403	136	92	NC_002950:PG1388|3end_hypothetical_protein_1470095..1470245_NEGATIVE
375	460	411	134	77	NC_002950:PG0962|3end_prolyl-tRNA_synthetase_1022327..1022477_NEGATIVE
374	435	392	113	72	NC_002950:PG0443|3end_hemagglutinin-related_protein_483147..483297_POSITIVE