Origin IGS: agaatcctatctgcaatgtacaatcttgcgaacaaaattgctttttgcaggcgtgaaatggcgattttgcataaaaaatcactcattgcaagcggaaaatagcgattttgttggcaaacttactcgccgcaagcctgcggctaagaattttgtatgcaaaattccttgctgcaagcctgcagcatagaatctcgcgaacaaaattcatagaatcctatcagcaatgtacaatcttgcgaacaaaattgccttttgcaggcgtgaaatgacgattttgcataaaaaatcactcgttgcaagcggaaaatagcgattttgttggcaaacttactcgccgcaagcctgcggctaagaattttgtatgcaaaattccttactgcaagcctgcagcatagaatctcgcgaacaaaatttcttattgcaagcctgcagtaagaaatctttatgcataaaatcaccattgccgaactgtgacaaaggactctgccacggaagtttatatatttctattatatattatatacaaatcgaaaaacaatctatataagactattattatcccgttaaaataggattgtagtaaaaactaatcaaaaactcaatcaaaaagagggtaatcgagttcttttacatcattgaaattcatcttttcaaataaatatctaagaggagccttatcggtcaatgagatacctgtacattgacctaaacaacacctattgagagatgctatttgcttgaagcctatactgttttgtagctccacaaagcgattataagagacaagatgtggaaacttgggccgacctgagcaggtgatatattgaagataaaaagctttccaattttggcgttttgagagatgaaacaggatcaggatggtcatgatcttgctgtccgagatcttaacctttctattccaacgtcgaacagacattgtaattagtcacaaaccggacctttccgagtgccgactctctttcagtacacgtcatcggcacaaaagaaacagttgttggactcaacttacaaaagaaactttttcaaaaacactcttctacggaaatatcgtatatatttgtattcaaatacataaacccg .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 cgggtttatgtatttgaatacaaatatatacgatatttccgtagaagagtgtttttgaaaaagtttcttttgtaagttgagtccaacaactgtttcttttgtgccgatgacgtgtactgaaagagagtcggcactcggaaaggtccggtttgtgactaattacaatgtctgttcgacgttggaatagaaaggttaagatctcggacagcaagatcatgaccatcctgatcctgtttcatctctcaaaacgccaaaattggaaagctttttatcttcaatatatcacctgctcaggtcggcccaagtttccacatcttgtctcttataatcgctttgtggagctacaaaacagtataggcttcaagcaaatagcatctctcaataggtgttgtttaggtcaatgtacaggtatctcattgaccgataaggctcctcttagatatttatttgaaaagatgaatttcaatgatgtaaaagaactcgattaccctctttttgattgagtttttgattagtttttactacaatcctattttaacgggataataatagtcttatatagattgtttttcgatttgtatataatatataatagaaatatataaacttccgtggcagagtcctttgtcacagttcggcaatggtgattttatgcataaagatttcttactgcaggcttgcaataagaaattttgttcgcgagattctatgctgcaggcttgcagtaaggaattttgcatacaaaattcttagccgcaggcttgcggcgagtaagtttgccaacaaaatcgctattttccgcttgcaacgagtgattttttatgcaaaatcgtcatttcacgcctgcaaaaggcaattttgttcgcaagattgtacattgctgataggattctatgaattttgttcgcgagattctatgctgcaggcttgcagcaaggaattttgcatacaaaattcttagccgcaggcttgcggcgagtaagtttgccaacaaaatcgctattttccgcttgcaatgagtgattttttatgcaaaatcgccatttcacgcctgcaaaaagcaattttgttcgcaagattgtacattgcagataggattct Mask Tandem Repeat Region ================================================ nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcttattgcaagcctgcagtaagaaatctttatgcataaaatcaccattgccgaactgtgacaaaggactctgccacggaagtttatatatttctattatatattatatacaaatcgaaaaacaatctatataagactattattatcccgttaaaataggattgtagtaaaaactaatcaaaaactcaatcaaaaagagggtaatcgagttcttttacatcattgaaattcatcttttcaaataaatatctaagaggagccttatcggtcaatgagatacctgtacattgacctaaacaacacctattgagagatgctatttgcttgaagcctatactgttttgtagctccacaaagcgattataagagacaagatgtggaaacttgggccgacctgagcaggtgatatattgaagataaaaagctttccaattttggcgttttgagagatgaaacaggatcaggatggtcatgatcttgctgtccgagatcttaacctttctattccaacgtcgaacagacattgtaattagtcacaaaccggacctttccgagtgccgactctctttcagtacacgtcatcggcacaaaagaaacagttgttggactcaacttacaaaagaaactttttcaaaaacactcttctacggaaatatcgtatatatttgtattcaaatacataaacccg Find is-nt database================================================ Query_seq: PG0297:PG0300|PG0297:PG0300:hypothetical protein:TPR domain protein:<-->:335609..336709 1101 agaatcctatctgcaatgtacaatcttgcgaacaaaattgctttttgcaggcgtgaaatggcgattttgcataaaaaatcactcattgcaagcggaaaatagcgattttgttggcaaacttactcgccgcaagcctgcggctaagaattttgtatgcaaaattccttgctgcaagcctgcagcatagaatctcgcgaacaaaattcatagaatcctatcagcaatgtacaatcttgcgaacaaaattgccttttgcaggcgtgaaatgacgattttgcataaaaaatcactcgttgcaagcggaaaatagcgattttgttggcaaacttactcgccgcaagcctgcggctaagaattttgtatgcaaaattccttactgcaagcctgcagcatagaatctcgcgaacaaaatttcttattgcaagcctgcagtaagaaatctttatgcataaaatcaccattgccgaactgtgacaaaggactctgccacggaagtttatatatttctattatatattatatacaaatcgaaaaacaatctatataagactattattatcccgttaaaataggattgtagtaaaaactaatcaaaaactcaatcaaaaagagggtaatcgagttcttttacatcattgaaattcatcttttcaaataaatatctaagaggagccttatcggtcaatgagatacctgtacattgacctaaacaacacctattgagagatgctatttgcttgaagcctatactgttttgtagctccacaaagcgattataagagacaagatgtggaaacttgggccgacctgagcaggtgatatattgaagataaaaagctttccaattttggcgttttgagagatgaaacaggatcaggatggtcatgatcttgctgtccgagatcttaacctttctattccaacgtcgaacagacattgtaattagtcacaaaccggacctttccgagtgccgactctctttcagtacacgtcatcggcacaaaagaaacagttgttggactcaacttacaaaagaaactttttcaaaaacactcttctacggaaatatcgtatatatttgtattcaaatacataaacccg Intra-Species Hit: Count: 0 Inter-species Hit: Count: 1 Min: 687 Max: 921 Len: 235 Subject: IS|IS195 HSP 1 e-value: 8.0E-52 bit: 204.0 Len: 235 Query Start:687 Query End:921 Subject Strand: NEGATIVE Subject Start: 261 Subject End: 495 ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gagatacctgtacattgacctaaacaacacctattgagagatgctatttgcttgaagcctatactgttttgtagctccacaaagcgattataagagacaagatgtggaaacttgggccgacctgagcaggtgatatattgaagataaaaagctttccaattttggcgttttgagagatgaaacaggatcaggatggtcatgatcttgctgtccgagatcttaacctttctattcc.................................................................................................................................................................................... ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gagatgccagtacattgacccaaacaacacatattgagaaatgctatcagcttgaaacctaccctgctttgcagctccacaaagcgattataagagacaagatgtgggaactcggatcgacacgagtgggtgatgtattgaagataaaaagctttcaaatctcggtatcttgacagatgaaacaggatcaggatggtcatgacctcactgtccgacatcttaaactttctattcc.................................................................................................................................................................................... Find is-aa database================================================ Query_seq: PG0297:PG0300|PG0297:PG0300:hypothetical protein:TPR domain protein:<-->:335609..336709 1101 agaatcctatctgcaatgtacaatcttgcgaacaaaattgctttttgcaggcgtgaaatggcgattttgcataaaaaatcactcattgcaagcggaaaatagcgattttgttggcaaacttactcgccgcaagcctgcggctaagaattttgtatgcaaaattccttgctgcaagcctgcagcatagaatctcgcgaacaaaattcatagaatcctatcagcaatgtacaatcttgcgaacaaaattgccttttgcaggcgtgaaatgacgattttgcataaaaaatcactcgttgcaagcggaaaatagcgattttgttggcaaacttactcgccgcaagcctgcggctaagaattttgtatgcaaaattccttactgcaagcctgcagcatagaatctcgcgaacaaaatttcttattgcaagcctgcagtaagaaatctttatgcataaaatcaccattgccgaactgtgacaaaggactctgccacggaagtttatatatttctattatatattatatacaaatcgaaaaacaatctatataagactattattatcccgttaaaataggattgtagtaaaaactaatcaaaaactcaatcaaaaagagggtaatcgagttcttttacatcattgaaattcatcttttcaaataaatatctaagaggagccttatcggtcaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacgtcgaacagacattgtaattagtcacaaaccggacctttccgagtgccgactctctttcagtacacgtcatcggcacaaaagaaacagttgttggactcaacttacaaaagaaactttttcaaaaacactcttctacggaaatatcgtatatatttgtattcaaatacataaacccg Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PG0297:PG0300|PG0297:PG0300:hypothetical protein:TPR domain protein:<-->:335609..336709 1101 agaatcctatctgcaatgtacaatcttgcgaacaaaattgctttttgcaggcgtgaaatggcgattttgcataaaaaatcactcattgcaagcggaaaatagcgattttgttggcaaacttactcgccgcaagcctgcggctaagaattttgtatgcaaaattccttgctgcaagcctgcagcatagaatctcgcgaacaaaattcatagaatcctatcagcaatgtacaatcttgcgaacaaaattgccttttgcaggcgtgaaatgacgattttgcataaaaaatcactcgttgcaagcggaaaatagcgattttgttggcaaacttactcgccgcaagcctgcggctaagaattttgtatgcaaaattccttactgcaagcctgcagcatagaatctcgcgaacaaaatttcttattgcaagcctgcagtaagaaatctttatgcataaaatcaccattgccgaactgtgacaaaggactctgccacggaagtttatatatttctattatatattatatacaaatcgaaaaacaatctatataagactattattatcccgttaaaataggattgtagtaaaaactaatcaaaaactcaatcaaaaagagggtaatcgagttcttttacatcattgaaattcatcttttcaaataaatatctaagaggagccttatcggtcaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacgtcgaacagacattgtaattagtcacaaaccggacctttccgagtgccgactctctttcagtacacgtcatcggcacaaaagaaacagttgttggactcaacttacaaaagaaactttttcaaaaacactcttctacggaaatatcgtatatatttgtattcaaatacataaacccg Intra-Species Hit: Count: 0 Inter-species Hit: Count: 2 Min: 35 Max: 437 Len: 403 Subject: UniRef90_Q7MWY7 Cluster: Hypothetical protein; n=1; Porphyromonas gingivalis|Rep: Hypothetical protein - Porphyromonas gingivalis (Bacteroides gingivalis) HSP 1 e-value: 9.0E-12 bit: 73.9 Len: 273 Query Start:165 Query End:437 Subject Strand: null Subject Start: 32 Subject End: 122 .................................................................................................................................................................... S Y C R L A I R N F V R E I L C C R L A V R N F A Y K I L S R R L A A S K F A N K I A I F R L Q R V I F Y A K S S F H A C K R Q F C S Q D C T L L I G F Y E F C S R D S M L Q A C S K ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ .................................................................................................................................................................... S W L K Y A F D D F V A E I P C R R Y A L C N F V D E I P C C K L A K G L L G N K I A Y C S L Q E A I L L P K F M F A A C R K R F C C R N S C L Q V G F Y E F C C Q D F A L H S C S E ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ HSP 2 e-value: 7.0E-7 bit: 57.8 Len: 357 Query Start:35 Query End:391 Subject Strand: null Subject Start: 17 Subject End: 121 .................................. K L L F A G V K W R F C I K N H S L Q A E N S D F V G K L T R R K P A A K N F V C K I P C C K P A A * N L A N K I H R I L S A M Y N L A N K I A F C R R E M T I L H K K S L V A S G K * R F C W Q T Y S P Q A C G * E F C M Q N S L L Q A C S ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... .................................. R L I A E S M Y L K F L Y R N S W L K Y A F D D F V A E I P C R R Y A L C N F V D E I P C C K - - - - - L A K G L - - - - - - - - - L G N K I A Y C S L Q E A I L L P K F M F A A C R K R F C C R N S C L Q V G F Y E F C C Q D F A L H S C S ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_Q7MXA9 Cluster: Hypothetical protein; n=1; Porphyromonas gingivalis|Rep: Hypothetical protein - Porphyromonas gingivalis (Bacteroides gingivalis) HSP 1 e-value: 4.0E-9 bit: 65.1 Len: 150 Query Start:59 Query End:208 Subject Strand: null Subject Start: 1 Subject End: 50 .......................................................... M N F V R E I L C C R L A A R N F A Y K I L S R R L A A S K F A N K I A I F R L Q * V I F Y A K S P ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. .......................................................... M N F V R E I L C C R L A A S D F V Y K I L C R R L A A R N F S R K I V I T R L Q R G I Y R G R L P ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. HSP 2 e-value: 2.0E-8 bit: 63.2 Len: 132 Query Start:282 Query End:413 Subject Strand: null Subject Start: 2 Subject End: 45 ......................................................................................................................................................................................................................................................................................... N F V R E I L C C R L A V R N F A Y K I L S R R L A A S K F A N K I A I F R L Q R V I F ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ ......................................................................................................................................................................................................................................................................................... N F V R E I L C C R L A A S D F V Y K I L C R R L A A R N F S R K I V I T R L Q R G I Y ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ agaatcctatctgcaatgtacaatcttgcgaacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatctttatgcataaaatcaccattgccgaactgtgacaaaggactctgccacggaagtttatatatttctattatatattatatacaaatcgaaaaacaatctatataagactattattatcccgttaaaataggattgtagtaaaaactaatcaaaaactcaatcaaaaagagggtaatcgagttcttttacatcattgaaattcatcttttcaaataaatatctaagaggagccttatcggtcaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacgtcgaacagacattgtaattagtcacaaaccggacctttccgagtgccgactctctttcagtacacgtcatcggcacaaaagaaacagttgttggactcaacttacaaaagaaactttttcaaaaacactcttctacggaaatatcgtatatatttgtattcaaatacataaacccg Predict ORF larger than 30AA ================================================ Protein_Len: 32 Strand: + Start: 4 End: 99 ... M L S A M Y N L A N K I A F C R R E M A I L H K K S L I A S G K .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 58 Strand: + Start: 11 End: 184 .......... M Q C T I L R T K L L F A G V K W R F C I K N H S L Q A E N S D F V G K L T R R K P A A K N F V C K I P C C K P A A ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 78 End: 266 ............................................................................. M T H C K R K I A I L L A N L L A A S L R L R I L Y A K F L A A S L Q H R I S R T K F I E S Y Q Q C T I L R T K L P F A ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 35 Strand: + Start: 203 End: 307 .......................................................................................................................................................................................................... M H R I L S A M Y N L A N K I A F C R R E M T I L H K K S L V A S G K .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 38 Strand: + Start: 279 End: 392 ...................................................................................................................................................................................................................................................................................... M K N H S L Q A E N S D F V G K L T R R K P A A K N F V C K I P Y C K P A A ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 49 Strand: + Start: 286 End: 432 ............................................................................................................................................................................................................................................................................................. M T R C K R K I A I L L A N L L A A S L R L R I L Y A K F L T A S L Q H R I S R T K F L I A S L Q ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 60 Strand: + Start: 362 End: 544 ......................................................................................................................................................................................................................................................................................................................................................................... M Q N S L L Q A C S I E S R E Q N F L L Q A C S K K S L C I K S P L P N C D K G L C H G S L Y I S I I Y Y I Q I E K Q S ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 33 Strand: + Start: 471 End: 569 ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M T K D S A T E V Y I F L L Y I I Y K S K N N L Y K T I I I P L K .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 42 Strand: + Start: 968 End: 1093 ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M P T L F Q Y T S S A Q K K Q L L D S T Y K R N F F K N T L L R K Y R I Y L Y S N T ........ Protein_Len: 60 Strand: + Start: 873 End: 1100 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ M R M V M I L L S E I L T F L F Q R R T D I V I S H K P D L S E C R L S F S T R H R H K R N S C W T Q L T K E T F S K T . Protein_Len: 36 Strand: + Start: 994 End: 1101 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M G T K E T V V G L N L Q K K L F Q K H S S T E I S Y I F V F K Y I N P Protein_Len: 36 Strand: - Start: 918 End: 1025 ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... E L T S C V N Y N T V F R V K G L A S E R E T C T M P V F S V T T P S M ............................................................................ Protein_Len: 39 Strand: - Start: 748 End: 864 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... V T K Y S W L A I I L S L I H F S P G V Q A P S I N F I F L K G I K A N Q S M ............................................................................................................................................................................................................................................. Protein_Len: 60 Strand: - Start: 602 End: 943 ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... V F R N Y S V L H P F K P R G S C T I Y Q L Y F A K W N Q R K S L H F L I L I T M I K S D S I K V K R N W R R V S M T M .............................................................................................................................................................. Protein_Len: 54 Strand: - Start: 352 End: 513 ............................................................................................................................................................................................................................................................................................................................................................... S N Q I C F E K S C A Q L M S D R S C F K K N C A Q L L F D K H M F D G N G F Q S L P S Q W P L K Y I E I M ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 60 Strand: - Start: 144 End: 500 ............................................................................................................................................... A F K S A A L R R S L I K Y A F N R V A L R C C L I E R V F N R I A L R C Y S I K I C L I V M A S S H C L V R G R F N M ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 41 Strand: - Start: 86 End: 208 ..................................................................................... Q L R F I A I K N A F K S A A L R R S L I K Y A F N R A A L R C C L I E R V F N M ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 41 Strand: - Start: 82 End: 204 ................................................................................. E N C A S F L S K T P L S V R R L G A A L F K T H L I G Q Q L G A A Y F R A F L M ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. agaatcctatctgcaatgtacaatcttgcgaacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatctttatgcataaaatcaccattgccgaactgtgacaaaggactctgccacggaagtttatatatttctattatatattatatacaaatcgaaaaacaatctatataagactattattatcccgttaaaataggattgtagtaaaaactaatcaaaaactcaatcaaaaagagggtaatcgagttcttttacatcattgaaattcatcttttcaaataaatatctaagaggagccttatcggtcaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacgtcgaacagacattgtaattagtcacaaaccggacctttccgagtgccgactctctttcagtacacgtcatcggcacaaaagaaacagttgttggactcaacttacaaaagaaactttttcaaaaacactcttctacggaaatatcgtatatatttgtattcaaatacataaacccg Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: - Score: 86 Start: 574 End: 603 .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAGTTTTTGATTAGTTTTTACTACAAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ agaatcctatctgcaatgtacaatcttgcgaacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatctttatgcataaaatcaccattgccgaactgtgacaaaggactctgccacggaagtttatatatttctattatatattatatacaaatcgaaaaacaatctatataagactattattatcccgttaaaataggattgtagtaaaaactaatcaaaaactcaatcaaaaagagggtaatcgagttcttttacatcattgaaattcatcttttcaaataaatatctaagaggagccttatcggtcaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacgtcgaacagacattgtaattagtcacaaaccggacctttccgagtgccgactctctttcagtacacgtcatcggcacaaaagaaacagttgttggactcaacttacaaaagaaactttttcaaaaacactcttctacggaaatatcgtatatatttgtattcaaatacataaacccg Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 95 HP_score: -12.8 Tail_Score: -3.61398 Start: 148 End: 203 Full_Region: ataggattctatgaa ttttgttcgcgagattctatgctgca ggct tgcagcaaggaattttgcatacaaaa ttcttagccgcaggc ...................................................................................................................................................ttttgttcgcgagattctatgctgcaggcttgcagcaaggaattttgcatacaaaa.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. TransTerm Strand: - Conf: 82 HP_score: -9.2 Tail_Score: -4.18197 Start: 162 End: 189 Full_Region: attttgttcgcgaga ttctatgctgca ggct tgcagcaaggaa ttttgcatacaaaat .................................................................................................................................................................ttctatgctgcaggcttgcagcaaggaa................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ TransTerm Strand: - Conf: 78 HP_score: -9.2 Tail_Score: -3.61398 Start: 356 End: 411 Full_Region: gcttgcaataagaaa ttttgttcgcgagattctatgctgca ggct tgcagtaaggaattttgcatacaaaa ttcttagccgcaggc ...................................................................................................................................................................................................................................................................................................................................................................ttttgttcgcgagattctatgctgcaggcttgcagtaaggaattttgcatacaaaa.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. TransTerm Strand: + Conf: 77 HP_score: -8.2 Tail_Score: -3.92373 Start: 410 End: 441 Full_Region: GAATCTCGCGAACAA AATTTCTTATTGCA AGCC TGCAGTAAGAAATC TTTATGCATAAAATC .........................................................................................................................................................................................................................................................................................................................................................................................................................AATTTCTTATTGCAAGCCTGCAGTAAGAAATC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 86 HP_score: -8.6 Tail_Score: -4.63486 Start: 412 End: 439 Full_Region: ttttatgcataaaga tttcttactgca ggct tgcaataagaaa ttttgttcgcgagat ...........................................................................................................................................................................................................................................................................................................................................................................................................................tttcttactgcaggcttgcaataagaaa...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 83 HP_score: -10.8 Tail_Score: -3.5511 Start: 412 End: 439 Full_Region: ATCTCGCGAACAAAA TTTCTTATTGCA AGCC TGCAGTAAGAAA TCTTTATGCATAAAA ...........................................................................................................................................................................................................................................................................................................................................................................................................................TTTCTTATTGCAAGCCTGCAGTAAGAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 47 HP_score: -2.5 Tail_Score: -3.53018 Start: 871 End: 921 Full_Region: tgtctgttcgacgtt ggaatagaaaggttaagatctcg gacag caagatcatgaccatcctgatcc tgtttcatctctcaa ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ggaatagaaaggttaagatctcggacagcaagatcatgaccatcctgatcc.................................................................................................................................................................................... TransTerm Strand: + Conf: 63 HP_score: -4.7 Tail_Score: -4.19177 Start: 881 End: 911 Full_Region: AAACAGGATCAGGAT GGTCATGATCTTG CTGTC CGAGATCTTAACC TTTCTATTCCAACGT ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCATGATCTTGCTGTCCGAGATCTTAACC.............................................................................................................................................................................................. TransTerm Strand: + Conf: 44 HP_score: -3.1 Tail_Score: -2.77899 Start: 921 End: 939 Full_Region: TTAACCTTTCTATTC CAACGTC GAACA GACATTG TAATTAGTCACAAAC ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACGTCGAACAGACATTG.................................................................................................................................................................. TransTerm Strand: + Conf: 46 HP_score: -2.1 Tail_Score: -3.42341 Start: 1059 End: 1073 Full_Region: TCAAAAACACTCTTC TACGG AAATA TCGTA TATATTTGTATTCAA ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGGAAATATCGTA............................ Find igs database================================================ Query_seq: PG0297:PG0300|PG0297:PG0300:hypothetical protein:TPR domain protein:<-->:335609..336709 1101 agaatcctatctgcaatgtacaatcttgcgaacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatctttatgcataaaatcaccattgccgaactgtgacaaaggactctgccacggaagtttatatatttctattatatattatatacaaatcgaaaaacaatctatataagactattattatcccgttaaaataggattgtagtaaaaactaatcaaaaactcaatcaaaaagagggtaatcgagttcttttacatcattgaaattcatcttttcaaataaatatctaagaggagccttatcggtcaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacgtcgaacagacattgtaattagtcacaaaccggacctttccgagtgccgactctctttcagtacacgtcatcggcacaaaagaaacagttgttggactcaacttacaaaagaaactttttcaaaaacactcttctacggaaatatcgtatatatttgtattcaaatacataaacccg Intra-Species Hit: Count: 1 Min: 1 Max: 1101 Len: 1101 Subject: NC_002950_PG0297_PG0300|hypothetical protein:TPR domain protein|NEGATIVE:POSITIVE|[335609,336709]|1101 HSP 1 e-value: 5.0E-97 bit: 357.0 Len: 180 Query Start:922 Query End:1101 Subject Strand: POSITIVE Subject Start: 922 Subject End: 1101 .........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................aacgtcgaacagacattgtaattagtcacaaaccggacctttccgagtgccgactctctttcagtacacgtcatcggcacaaaagaaacagttgttggactcaacttacaaaagaaactttttcaaaaacactcttctacggaaatatcgtatatatttgtattcaaatacataaacccg .........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................aacgtcgaacagacattgtaattagtcacaaaccggacctttccgagtgccgactctctttcagtacacgtcatcggcacaaaagaaacagttgttggactcaacttacaaaagaaactttttcaaaaacactcttctacggaaatatcgtatatatttgtattcaaatacataaacccg HSP 2 e-value: 2.0E-65 bit: 252.0 Len: 127 Query Start:560 Query End:686 Subject Strand: POSITIVE Subject Start: 560 Subject End: 686 ...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cccgttaaaataggattgtagtaaaaactaatcaaaaactcaatcaaaaagagggtaatcgagttcttttacatcattgaaattcatcttttcaaataaatatctaagaggagccttatcggtcaat............................................................................................................................................................................................................................................................................................................................................................................................................................... ...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cccgttaaaataggattgtagtaaaaactaatcaaaaactcaatcaaaaagagggtaatcgagttcttttacatcattgaaattcatcttttcaaataaatatctaagaggagccttatcggtcaat............................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 3 e-value: 9.0E-25 bit: 117.0 Len: 59 Query Start:438 Query End:496 Subject Strand: POSITIVE Subject Start: 438 Subject End: 496 .....................................................................................................................................................................................................................................................................................................................................................................................................................................................aatctttatgcataaaatcaccattgccgaactgtgacaaaggactctgccacggaagt............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. .....................................................................................................................................................................................................................................................................................................................................................................................................................................................aatctttatgcataaaatcaccattgccgaactgtgacaaaggactctgccacggaagt............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. HSP 4 e-value: 7.0E-10 bit: 67.9 Len: 34 Query Start:1 Query End:34 Subject Strand: POSITIVE Subject Start: 1 Subject End: 34 agaatcctatctgcaatgtacaatcttgcgaaca........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... agaatcctatctgcaatgtacaatcttgcgaaca........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 5 e-value: 2.0E-7 bit: 60.0 Len: 34 Query Start:1 Query End:34 Subject Strand: POSITIVE Subject Start: 209 Subject End: 242 agaatcctatctgcaatgtacaatcttgcgaaca........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... agaatcctatcagcaatgtacaatcttgcgaaca........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AGAAUCCUAUCUGCAAUGUACAAUCUUGCGAACAAAAUUGCUUUUUGCAGGCGUGAAAUGGCGAUUUUGCAUAAAAAAUCACUCAUUGCAAGCGGAAAAUAGCGAUUUUGUUGGCAAACUUACUCGCCGCAAGCCUGCGGCUAAGAAUUUUGUAUGCAAAAUUCCUUGCUGCAAGCCUGCAGCAUAGAAUCUCGCGAACAAAAUUCAUAGAAUCCUAUCAGCAAUGUACAAUCUUGCGAACAAAAUUGCCUUUUGCAGGCGUGAAAUGACGAUUUUGCAUAAAAAAUCACUCGUUGCAAGCGGAAAAUAGCGAUUUUGUUGGCAAACUUACUCGCCGCAAGCCUGCGGCUAAGAAUUUUGUAUGCAAAAUUCCUUACUGCAAGCCUGCAGCAUAGAAUCUCGCGAACAAAAUUUCUUAUUGCAAGCCUGCAGUAAGAAAUCUUUAUGCAUAAAAUCACCAUUGCCGAACUGUGACAAAGGACUCUGCCACGGAAGUUUAUAUAUUUCUAUUAUAUAUUAUAUACAAAUCGAAAAACAAUCUAUAUAAGACUAUUAUUAUCCCGUUAAAAUAGGAUUGUAGUAAAAACUAAUCAAAAACUCAAUCAAAAAGAGGGUAAUCGAGUUCUUUUACAUCAUUGAAAUUCAUCUUUUCAAAUAAAUAUCUAAGAGGAGCCUUAUCGGUCAAUGAGAUACCUGUACAUUGACCUAAACAACACCUAUUGAGAGAUGCUAUUUGCUUGAAGCCUAUACUGUUUUGUAGCUCCACAAAGCGAUUAUAAGAGACAAGAUGUGGAAACUUGGGCCGACCUGAGCAGGUGAUAUAUUGAAGAUAAAAAGCUUUCCAAUUUUGGCGUUUUGAGAGAUGAAACAGGAUCAGGAUGGUCAUGAUCUUGCUGUCCGAGAUCUUAACCUUUCUAUUCCAACGUCGAACAGACAUUGUAAUUAGUCACAAACCGGACCUUUCCGAGUGCCGACUCUCUUUCAGUACACGUCAUCGGCACAAAAGAAACAGUUGUUGGACUCAACUUACAAAAGAAACUUUUUCAAAAACACUCUUCUACGGAAAUAUCGUAUAUAUUUGUAUUCAAAUACAUAAACCCG ....(((..((.((((((.......((((.((((((((((((((((((..(((....((((.((((((......)))))).).))))))..))))))...)))))))))))).))))........((((((.((.((((((...(((((((((.(((...((((..(((((((....)))))))..))))...))).)))))))))...........................((((.(((((((((((.((((((..(((....((((.((((((......))))))..)))))))..))))))....))))))))))).))))........)))))).)).))))))...((.(((((((((.((.(((.(((((((((.((.(((((...((((...............))))..))))).)).))))))))).))).)))))))).))).))..)))))).))..((((((.((((((((((((..((((((......))))))........(((((((.................)))))))...((((((.((((..(....)..)))).))))))..............................))))...))))))))(((((.........(((((((((.((((...........(..((((.(((((..((((((.(.(((((((.(((((.(((((........((((....))))((((...((((...(.((((.((((((((......))))))))..)))).)...))))..))))....))))).)))..)).))))))).).)))))).)))))...))))..)...........)))))))))))))...(((..((((.(((...(((((((.....)))))))...))).))))..)))...(((.....)))..)))))...))))))....)))..((((((.(((((((....................)))))))....((((.((((.(((...........)))....)))).))))...............)))))).....(((.((((((....)))))).)))...... (-297.59) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ CGGGUUUAUGUAUUUGAAUACAAAUAUAUACGAUAUUUCCGUAGAAGAGUGUUUUUGAAAAAGUUUCUUUUGUAAGUUGAGUCCAACAACUGUUUCUUUUGUGCCGAUGACGUGUACUGAAAGAGAGUCGGCACUCGGAAAGGUCCGGUUUGUGACUAAUUACAAUGUCUGUUCGACGUUGGAAUAGAAAGGUUAAGAUCUCGGACAGCAAGAUCAUGACCAUCCUGAUCCUGUUUCAUCUCUCAAAACGCCAAAAUUGGAAAGCUUUUUAUCUUCAAUAUAUCACCUGCUCAGGUCGGCCCAAGUUUCCACAUCUUGUCUCUUAUAAUCGCUUUGUGGAGCUACAAAACAGUAUAGGCUUCAAGCAAAUAGCAUCUCUCAAUAGGUGUUGUUUAGGUCAAUGUACAGGUAUCUCAUUGACCGAUAAGGCUCCUCUUAGAUAUUUAUUUGAAAAGAUGAAUUUCAAUGAUGUAAAAGAACUCGAUUACCCUCUUUUUGAUUGAGUUUUUGAUUAGUUUUUACUACAAUCCUAUUUUAACGGGAUAAUAAUAGUCUUAUAUAGAUUGUUUUUCGAUUUGUAUAUAAUAUAUAAUAGAAAUAUAUAAACUUCCGUGGCAGAGUCCUUUGUCACAGUUCGGCAAUGGUGAUUUUAUGCAUAAAGAUUUCUUACUGCAGGCUUGCAAUAAGAAAUUUUGUUCGCGAGAUUCUAUGCUGCAGGCUUGCAGUAAGGAAUUUUGCAUACAAAAUUCUUAGCCGCAGGCUUGCGGCGAGUAAGUUUGCCAACAAAAUCGCUAUUUUCCGCUUGCAACGAGUGAUUUUUUAUGCAAAAUCGUCAUUUCACGCCUGCAAAAGGCAAUUUUGUUCGCAAGAUUGUACAUUGCUGAUAGGAUUCUAUGAAUUUUGUUCGCGAGAUUCUAUGCUGCAGGCUUGCAGCAAGGAAUUUUGCAUACAAAAUUCUUAGCCGCAGGCUUGCGGCGAGUAAGUUUGCCAACAAAAUCGCUAUUUUCCGCUUGCAAUGAGUGAUUUUUUAUGCAAAAUCGCCAUUUCACGCCUGCAAAAAGCAAUUUUGUUCGCAAGAUUGUACAUUGCAGAUAGGAUUCU ((((..((((((((((....))))))))))..(((((((.((((..(.((((((((((((.((..((..((((((....(((((((..((((..((((((((((((((..(...........)...))))))))...))))))..))))))).))))..))))))..(((((((.......)))))))..(((((.(((((.(.....).))))).))))).....))..)).)))))......)))))))).......(((((((....(((.....(((((((...(((..((....))..))).....((((((...((..((((...((..(.((((((.......................(((((((((((......))))))))))).((((((((...........)))))))).....)))))).)..))....))))..)).))))))........))))))).(((((((((((((.........)))))))))))))))).))))))).)))).(((((........))))).......((..(((((((((((.....)))))))))))..))........))))))).......))))....((((((((..(((.......((((((((((((((..((((((.((((((((..((((((((((((..((((((.((((((..((((((((((.((((((((((((((((((.((((((((((..(((((((((.((((.((((((.((.(((((.....(((((....(((((((((.................)))))))))....))))).)))))....)).)))))).....(((((((((....))))))))).....)))).(((....))).)))))))))..)))))))))).)))))))))))))))))).))))))))))..))))))))))))...))))))))))))..)).))))))......(((((((((.................))))))))).)))))))))))))))))....))).((((...(((((((((....)))))))))...)))).))))))))))) (-355.86) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 1013 140 91 231 182 NC_002950:PG0297|5end_hypothetical_protein_335518..335748_NEGATIVE 556 390 343 48 1 NC_002950:PG0681|5end_hypothetical_protein_732719..732949_NEGATIVE 444 490 441 91 42 NC_002950:PG0442|5end_hypothetical_protein_481882..482112_NEGATIVE 401 1000 955 53 4 NC_002950:PG1925|5end_ribosomal_protein_S14_2018675..2018905_NEGATIVE 388 909 861 213 164 NC_002950:PG2000|5end_signal_peptidase-related_protein_2089468..2089698_NEGATIVE 383 1000 962 129 82 NC_002950:PG0009|5end_ISPg5_transposase_Orf1_8466..8696_NEGATIVE 377 890 842 173 129 NC_002950:PG0384|5end_MutS2_family_protein_416095..416325_POSITIVE 370 493 454 213 176 NC_002950:PG2032|5end_primosomal_protein_N'_2133381..2133611_NEGATIVE 367 899 854 104 54 NC_002950:PG0066|5end_hypothetical_protein_81551..81781_NEGATIVE 356 260 211 71 19 NC_002950:PG1919|5end_ribosomal_protein_L15_2016281..2016511_NEGATIVE 348 906 863 72 33 NC_002950:PG1727|5end_yitL_protein_1816709..1816939_POSITIVE 344 996 962 112 76 NC_002950:PG0942|5end_ISPg5,_transposase_Orf1_1002063..1002293_POSITIVE 342 405 363 139 87 NC_002950:PG0065|5end_efflux_transporter,_RND_family,_MFP_subunit_81187..81417_NEGATIVE 341 140 92 79 34 NC_002950:PG0145|5end_hypothetical_protein_167831..168061_POSITIVE 337 169 122 216 153 NC_002950:PG0307|5end_NADH-ubiquinone_oxidoreductase_342560..342790_POSITIVE 337 146 102 180 128 NC_002950:PG0229|5end_hypothetical_protein_264872..265102_POSITIVE 337 984 946 63 12 NC_002950:PG0090|5end_Dps_family_protein_105524..105754_POSITIVE 336 1000 959 45 6 NC_002950:PG0132|5end_hypothetical_protein_152879..153109_POSITIVE 335 1005 964 41 3 NC_002950:PG2066|5end_lipoprotein,_putative_2162116..2162346_POSITIVE 335 999 959 225 188 NC_002950:PG0214|5end_RNA_polymerase_sigma-70_factor,_ECF_subfamily_250963..251193_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 456 390 341 149 100 NC_002950:PG0681|3end_hypothetical_protein_732411..732561_NEGATIVE 401 1000 955 51 2 NC_002950:PG1926|3end_50S_ribosomal_protein_L5_2018677..2018827_NEGATIVE 381 210 165 139 94 NC_002950:PG0442|3end_hypothetical_protein_481514..481664_NEGATIVE 378 1000 955 143 99 NC_002950:PG2205|3end_2-dehydropantoate_2-reductase_2317145..2317295_POSITIVE 374 139 93 150 108 NC_002950:PG0634|3end_ThiJ/PfpI_family_protein_686768..686918_POSITIVE 372 140 91 137 81 NC_002950:PG0443|3end_hemagglutinin-related_protein_483147..483297_POSITIVE 348 906 863 62 23 NC_002950:PG1726|3end_PDZ_domain_protein_1816779..1816929_POSITIVE 344 755 721 119 78 NC_002950:PG0412|3end_DNA_mismatch_repair_protein_MutL_449584..449734_NEGATIVE 342 405 363 62 10 NC_002950:PG0066|3end_hypothetical_protein_81264..81414_NEGATIVE 341 272 232 59 14 NC_002950:PG1920|3end_ribosomal_protein_L30_2016307..2016457_NEGATIVE 340 1000 955 101 67 NC_002950:PG2004|3end_hypothetical_protein_2093135..2093285_NEGATIVE 339 1000 955 113 63 NC_002950:PG2214|3end_hypothetical_protein_2325301..2325451_NEGATIVE 336 1000 959 140 101 NC_002950:PG0132|3end_hypothetical_protein_153054..153204_POSITIVE 334 989 947 75 38 NC_002950:PG2212|3end_hypothetical_protein_2324483..2324633_NEGATIVE 329 999 955 71 25 NC_002950:PG1288|3end_GDP-mannose_4,6-dehydratase_1367128..1367278_POSITIVE 326 998 953 135 82 NC_002950:PG0745|3end_lactoylglutathione_lyase,_putative_791982..792132_NEGATIVE 323 491 458 147 107 NC_002950:PG1715|3end_hypothetical_protein_1803393..1803543_NEGATIVE 322 1020 972 86 45 NC_002950:PG1711|3end_alpha-1,2-mannosidase_family_protein_1796652..1796802_NEGATIVE 321 999 953 149 100 NC_002950:PG0361|3end_hypothetical_protein_395481..395631_POSITIVE 316 997 954 106 52 NC_002950:PG2126|3end_conserved_hypothetical_protein_TIGR00044_2232438..2232588_NEGATIVE