Origin IGS: ctttcttcaacttctttgagttcaacataaatcaacttccaaaagccattcggcatcgtcttacaaaaagctcgttccacagtcctcccgtcattcctccgactgcatgaaccttcgtttttaagcctatcctatccataaggatctatttctctcttaaagagagtgattatctatgttacaaagataagtgttttttgttgccgtccggtaaaaaaatgaagattcttcaaaacatactgtaataatggagtttgctttactgccatttatatgtggttaggctgttttccccttcgtaatgacactttatagaacagtaatggcaaagaagggaagattttatctcgaatttcctgactgcccaaattttaccggacagcagttcgtgttttctgaaattcgcgagcgagaatttttccgttgtggcgcgtaaaatttttactttccgaaccaaaacgaaaaaattcccgagccacgtttttccaaacgctaaaccgccatttttacgaactgacgtgtactgaaaaaaagttgacactcggagaggaggtcaaacatttcgatataattattgctttttctgatctttctaagga .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 tccttagaaagatcagaaaaagcaataattatatcgaaatgtttgacctcctctccgagtgtcaactttttttcagtacacgtcagttcgtaaaaatggcggtttagcgtttggaaaaacgtggctcgggaattttttcgttttggttcggaaagtaaaaattttacgcgccacaacggaaaaattctcgctcgcgaatttcagaaaacacgaactgctgtccggtaaaatttgggcagtcaggaaattcgagataaaatcttcccttctttgccattactgttctataaagtgtcattacgaaggggaaaacagcctaaccacatataaatggcagtaaagcaaactccattattacagtatgttttgaagaatcttcatttttttaccggacggcaacaaaaaacacttatctttgtaacatagataatcactctctttaagagagaaatagatccttatggataggataggcttaaaaacgaaggttcatgcagtcggaggaatgacgggaggactgtggaacgagctttttgtaagacgatgccgaatggcttttggaagttgatttatgttgaactcaaagaagttgaagaaag Mask Tandem Repeat Region ================================================ ctttcttcaacttctttgagttcaacataaatcaacttccaaaagccattcggcatcgtcttacaaaaagctcgttccacagtcctcccgtcattcctccgactgcatgaaccttcgtttttaagcctatcctatccataaggatctatttctctcttaaagagagtgattatctatgttacaaagataagtgttttttgttgccgtccggtaaaaaaatgaagattcttcaaaacatactgtaataatggagtttgctttactgccatttatatgtggttaggctgttttccccttcgtaatgacactttatagaacagtaatggcaaagaagggaagattttatctcgaatttcctgactgcccaaattttaccggacagcagttcgtgttttctgaaattcgcgagcgagaatttttccgttgtggcgcgtaaaatttttactttccgaaccaaaacgaaaaaattcccgagccacgtttttccaaacgctaaaccgccatttttacgaactgacgtgtactgaaaaaaagttgacactcggagaggaggtcaaacatttcgatataattattgctttttctgatctttctaagga Find is-nt database================================================ Query_seq: PG0293:PG0294|PG0293:PG0294:secretion activator protein, putative:glycosyl transferase, group 2 family protein:<-<-:328762..329360 599 ctttcttcaacttctttgagttcaacataaatcaacttccaaaagccattcggcatcgtcttacaaaaagctcgttccacagtcctcccgtcattcctccgactgcatgaaccttcgtttttaagcctatcctatccataaggatctatttctctcttaaagagagtgattatctatgttacaaagataagtgttttttgttgccgtccggtaaaaaaatgaagattcttcaaaacatactgtaataatggagtttgctttactgccatttatatgtggttaggctgttttccccttcgtaatgacactttatagaacagtaatggcaaagaagggaagattttatctcgaatttcctgactgcccaaattttaccggacagcagttcgtgttttctgaaattcgcgagcgagaatttttccgttgtggcgcgtaaaatttttactttccgaaccaaaacgaaaaaattcccgagccacgtttttccaaacgctaaaccgccatttttacgaactgacgtgtactgaaaaaaagttgacactcggagaggaggtcaaacatttcgatataattattgctttttctgatctttctaagga Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PG0293:PG0294|PG0293:PG0294:secretion activator protein, putative:glycosyl transferase, group 2 family protein:<-<-:328762..329360 599 ctttcttcaacttctttgagttcaacataaatcaacttccaaaagccattcggcatcgtcttacaaaaagctcgttccacagtcctcccgtcattcctccgactgcatgaaccttcgtttttaagcctatcctatccataaggatctatttctctcttaaagagagtgattatctatgttacaaagataagtgttttttgttgccgtccggtaaaaaaatgaagattcttcaaaacatactgtaataatggagtttgctttactgccatttatatgtggttaggctgttttccccttcgtaatgacactttatagaacagtaatggcaaagaagggaagattttatctcgaatttcctgactgcccaaattttaccggacagcagttcgtgttttctgaaattcgcgagcgagaatttttccgttgtggcgcgtaaaatttttactttccgaaccaaaacgaaaaaattcccgagccacgtttttccaaacgctaaaccgccatttttacgaactgacgtgtactgaaaaaaagttgacactcggagaggaggtcaaacatttcgatataattattgctttttctgatctttctaagga Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PG0293:PG0294|PG0293:PG0294:secretion activator protein, putative:glycosyl transferase, group 2 family protein:<-<-:328762..329360 599 ctttcttcaacttctttgagttcaacataaatcaacttccaaaagccattcggcatcgtcttacaaaaagctcgttccacagtcctcccgtcattcctccgactgcatgaaccttcgtttttaagcctatcctatccataaggatctatttctctcttaaagagagtgattatctatgttacaaagataagtgttttttgttgccgtccggtaaaaaaatgaagattcttcaaaacatactgtaataatggagtttgctttactgccatttatatgtggttaggctgttttccccttcgtaatgacactttatagaacagtaatggcaaagaagggaagattttatctcgaatttcctgactgcccaaattttaccggacagcagttcgtgttttctgaaattcgcgagcgagaatttttccgttgtggcgcgtaaaatttttactttccgaaccaaaacgaaaaaattcccgagccacgtttttccaaacgctaaaccgccatttttacgaactgacgtgtactgaaaaaaagttgacactcggagaggaggtcaaacatttcgatataattattgctttttctgatctttctaagga Intra-Species Hit: Count: 0 Inter-species Hit: Count: 1 Min: 371 Max: 541 Len: 171 Subject: UniRef90_Q7MTP3 Cluster: Hypothetical protein; n=1; Porphyromonas gingivalis|Rep: Hypothetical protein - Porphyromonas gingivalis (Bacteroides gingivalis) HSP 1 e-value: 7.0E-15 bit: 82.8 Len: 171 Query Start:371 Query End:541 Subject Strand: null Subject Start: 10 Subject End: 70 .................................................................................................................................................................................................................................................................................................................................................................................. V S T F F Q Y T S - - - - V R K N G G L A F G K T W L G N F F V L V R K V K I L R A T T E K F S L A N F R K H E L L S G K .......................................................... .................................................................................................................................................................................................................................................................................................................................................................................. I T A F F D L S D S V H V V R K N G G L A F G K T W L G N F F V L V R E V K I L R A T T E K F S L V N L R K L E P H S G Q .......................................................... ctttcttcaacttctttgagttcaacataaatcaacttccaaaagccattcggcatcgtcttacaaaaagctcgttccacagtcctcccgtcattcctccgactgcatgaaccttcgtttttaagcctatcctatccataaggatctatttctctcttaaagagagtgattatctatgttacaaagataagtgttttttgttgccgtccggtaaaaaaatgaagattcttcaaaacatactgtaataatggagtttgctttactgccatttatatgtggttaggctgttttccccttcgtaatgacactttatagaacagtaatggcaaagaagggaagattttatctcgaatttcctgactgcccaaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcggagaggaggtcaaacatttcgatataattattgctttttctgatctttctaagga Predict ORF larger than 30AA ================================================ Protein_Len: 36 Strand: + Start: 31 End: 138 .............................. M N F Q K P F G I V L Q K A R S T V L P S F L R L H E P S F L S L S Y P ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 38 Strand: + Start: 129 End: 242 ................................................................................................................................ M L S I R I Y F S L K E S D Y L C Y K D K C F L L P S G K K M K I L Q N I L ..................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 44 Strand: + Start: 302 End: 433 ............................................................................................................................................................................................................................................................................................................. M T L Y R T V M A K K G R F Y L E F P D C P N F T G Q Q F V F S E I R E R E F F R C G A ...................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 345 End: 524 ........................................................................................................................................................................................................................................................................................................................................................ M S N F L T A Q I L P D S S S C F L K F A S E N F S V V A R K I F T F R T K T K K F P S H V F P N A K P P F L R T D V Y ........................................................................... Protein_Len: 60 Strand: + Start: 415 End: 597 .............................................................................................................................................................................................................................................................................................................................................................................................................................. M F P L W R V K F L L S E P K R K N S R A T F F Q T L N R H F Y E L T C T E K K L T L G E E V K H F D I I I A F S D L S .. Protein_Len: 31 Strand: - Start: 496 End: 588 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... V A M K V F Q R T S F F L Q C E S L L D F M E I Y N N S K R M ........... Protein_Len: 35 Strand: - Start: 375 End: 479 ...................................................................................................................................................................................................................................................................................................................................................................................... R V A T R T K Q F E R A L I K G N H R T F N K S E S G F R F F E R A M ........................................................................................................................ Protein_Len: 32 Strand: - Start: 273 End: 368 ................................................................................................................................................................................................................................................................................ I H N P Q K G R R L S V K Y F L L P L S P F I K D R I E Q S G M ....................................................................................................................................................................................................................................... Protein_Len: 60 Strand: - Start: 263 End: 541 ...................................................................................................................................................................................................................................................................... A W I K G S L L E H K R F N A L S F K E T T A R L I K V K R V L V F F N G L W T K G F A L G G N K R V S T Y Q F F T S M .......................................................... Protein_Len: 31 Strand: - Start: 177 End: 269 ................................................................................................................................................................................ T V F I L T K Q Q R G T F F H L N K L V Y Q L L P T Q K V A M .......................................................................................................................................................................................................................................................................................................................................... Protein_Len: 38 Strand: - Start: 160 End: 273 ............................................................................................................................................................... L S H N D I N C L Y T N K T A T R Y F F S S E E F C V T I I S N A K S G N M ...................................................................................................................................................................................................................................................................................................................................... Protein_Len: 37 Strand: - Start: 35 End: 145 .................................. S G F A M R C R R V F L E N W L G G T M G G V A H V K T K L G I R D M L M ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ctttcttcaacttctttgagttcaacataaatcaacttccaaaagccattcggcatcgtcttacaaaaagctcgttccacagtcctcccgtcattcctccgactgcatgaaccttcgtttttaagcctatcctatccataaggatctatttctctcttaaagagagtgattatctatgttacaaagataagtgttttttgttgccgtccggtaaaaaaatgaagattcttcaaaacatactgtaataatggagtttgctttactgccatttatatgtggttaggctgttttccccttcgtaatgacactttatagaacagtaatggcaaagaagggaagattttatctcgaatttcctgactgcccaaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcggagaggaggtcaaacatttcgatataattattgctttttctgatctttctaagga Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ ctttcttcaacttctttgagttcaacataaatcaacttccaaaagccattcggcatcgtcttacaaaaagctcgttccacagtcctcccgtcattcctccgactgcatgaaccttcgtttttaagcctatcctatccataaggatctatttctctcttaaagagagtgattatctatgttacaaagataagtgttttttgttgccgtccggtaaaaaaatgaagattcttcaaaacatactgtaataatggagtttgctttactgccatttatatgtggttaggctgttttccccttcgtaatgacactttatagaacagtaatggcaaagaagggaagattttatctcgaatttcctgactgcccaaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcggagaggaggtcaaacatttcgatataattattgctttttctgatctttctaagga Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 85 HP_score: -6.3 Tail_Score: -5.40072 Start: 220 End: 232 Full_Region: tattacagtatgttt tgaag aat cttca tttttttaccggacg ...........................................................................................................................................................................................................................tgaagaatcttca............................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 70 HP_score: -8.2 Tail_Score: -3.35798 Start: 416 End: 467 Full_Region: aacgtggctcgggaa ttttttcgttttggttcggaaagt aaaa attttacgcgccacaacggaaaaa ttctcgctcgcgaat ...............................................................................................................................................................................................................................................................................................................................................................................................................................ttttttcgttttggttcggaaagtaaaaattttacgcgccacaacggaaaaa.................................................................................................................................... Find igs database================================================ Query_seq: PG0293:PG0294|PG0293:PG0294:secretion activator protein, putative:glycosyl transferase, group 2 family protein:<-<-:328762..329360 599 ctttcttcaacttctttgagttcaacataaatcaacttccaaaagccattcggcatcgtcttacaaaaagctcgttccacagtcctcccgtcattcctccgactgcatgaaccttcgtttttaagcctatcctatccataaggatctatttctctcttaaagagagtgattatctatgttacaaagataagtgttttttgttgccgtccggtaaaaaaatgaagattcttcaaaacatactgtaataatggagtttgctttactgccatttatatgtggttaggctgttttccccttcgtaatgacactttatagaacagtaatggcaaagaagggaagattttatctcgaatttcctgactgcccaaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcggagaggaggtcaaacatttcgatataattattgctttttctgatctttctaagga Intra-Species Hit: Count: 2 Min: 1 Max: 599 Len: 599 Subject: NC_002950_PG0293_PG0294|secretion activator protein, putative:glycosyl transferase, group 2 family protein|NEGATIVE:NEGATIVE|[328762,329360]|599 HSP 1 e-value: 0.0 bit: 692.0 Len: 370 Query Start:1 Query End:370 Subject Strand: POSITIVE Subject Start: 1 Subject End: 370 ctttcttcaacttctttgagttcaacataaatcaacttccaaaagccattcggcatcgtcttacaaaaagctcgttccacagtcctcccgtcattcctccgactgcatgaaccttcgtttttaagcctatcctatccataaggatctatttctctcttaaagagagtgattatctatgttacaaagataagtgttttttgttgccgtccggtnnnnnnntgaagattcttcaaaacatactgtaataatggagtttgctttactgccatttatatgtggttaggctgttttccccttcgtaatgacactttatagaacagtaatggcaaagaagggaagattttatctcgaatttcctgactgcccaaat..................................................................................................................................................................................................................................... ctttcttcaacttctttgagttcaacataaatcaacttccaaaagccattcggcatcgtcttacaaaaagctcgttccacagtcctcccgtcattcctccgactgcatgaaccttcgtttttaagcctatcctatccataaggatctatttctctcttaaagagagtgattatctatgttacaaagataagtgttttttgttgccgtccggtaaaaaaatgaagattcttcaaaacatactgtaataatggagtttgctttactgccatttatatgtggttaggctgttttccccttcgtaatgacactttatagaacagtaatggcaaagaagggaagattttatctcgaatttcctgactgcccaaat..................................................................................................................................................................................................................................... HSP 2 e-value: 2.0E-24 bit: 115.0 Len: 58 Query Start:542 Query End:599 Subject Strand: POSITIVE Subject Start: 542 Subject End: 599 .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tcggagaggaggtcaaacatttcgatataattattgctttttctgatctttctaagga .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tcggagaggaggtcaaacatttcgatataattattgctttttctgatctttctaagga Subject: NC_002950_PG1769_PG1770|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1857071,1857423]|353 HSP 1 e-value: 6.0E-49 bit: 196.0 Len: 139 Query Start:220 Query End:358 Subject Strand: POSITIVE Subject Start: 95 Subject End: 233 ...........................................................................................................................................................................................................................tgaagattcttcaaaacatactgtaataatggagtttgctttactgccatttatatgtggttaggctgttttccccttcgtaatgacactttatagaacagtaatggcaaagaagggaagattttatctcgaatttcct................................................................................................................................................................................................................................................. ...........................................................................................................................................................................................................................tgaagattcttcaaaacatactgtaataatggaatttactttactaccatttatacgtggttaggctgttttccccttcgtaatgactcttgatagaacagtaatggctaagaaagggagattttatttcgaatttcct................................................................................................................................................................................................................................................. Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ CUUUCUUCAACUUCUUUGAGUUCAACAUAAAUCAACUUCCAAAAGCCAUUCGGCAUCGUCUUACAAAAAGCUCGUUCCACAGUCCUCCCGUCAUUCCUCCGACUGCAUGAACCUUCGUUUUUAAGCCUAUCCUAUCCAUAAGGAUCUAUUUCUCUCUUAAAGAGAGUGAUUAUCUAUGUUACAAAGAUAAGUGUUUUUUGUUGCCGUCCGGUAAAAAAAUGAAGAUUCUUCAAAACAUACUGUAAUAAUGGAGUUUGCUUUACUGCCAUUUAUAUGUGGUUAGGCUGUUUUCCCCUUCGUAAUGACACUUUAUAGAACAGUAAUGGCAAAGAAGGGAAGAUUUUAUCUCGAAUUUCCUGACUGCCCAAAUUUUACCGGACAGCAGUUCGUGUUUUCUGAAAUUCGCGAGCGAGAAUUUUUCCGUUGUGGCGCGUAAAAUUUUUACUUUCCGAACCAAAACGAAAAAAUUCCCGAGCCACGUUUUUCCAAACGCUAAACCGCCAUUUUUACGAACUGACGUGUACUGAAAAAAAGUUGACACUCGGAGAGGAGGUCAAACAUUUCGAUAUAAUUAUUGCUUUUUCUGAUCUUUCUAAGGA ..(((((...((((((((((((((((..................(((....)))..((((..(((((((((..((((..(((((................)))))...))))............((.((((......(((.((((..(((.(((((.....))))).))).)))).)))......)))).))))))))))).((.(((((((((((...(((((...))))).....((((((......((((...((((....(((((......))))).))))....)))).....((((.......))))...))))))..((((....((((((..............))))))...))))....))))))))))).)).(((((((......((((..((.(.((..((((((((.((((.(((..((.(((........))).))..))).)))).))))))))....))).))..)))).....((......))......))))))).))))..............))))).))))))))))).(((((.......(((((....))))).......))))).....))))) (-144.57) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UCCUUAGAAAGAUCAGAAAAAGCAAUAAUUAUAUCGAAAUGUUUGACCUCCUCUCCGAGUGUCAACUUUUUUUCAGUACACGUCAGUUCGUAAAAAUGGCGGUUUAGCGUUUGGAAAAACGUGGCUCGGGAAUUUUUUCGUUUUGGUUCGGAAAGUAAAAAUUUUACGCGCCACAACGGAAAAAUUCUCGCUCGCGAAUUUCAGAAAACACGAACUGCUGUCCGGUAAAAUUUGGGCAGUCAGGAAAUUCGAGAUAAAAUCUUCCCUUCUUUGCCAUUACUGUUCUAUAAAGUGUCAUUACGAAGGGGAAAACAGCCUAACCACAUAUAAAUGGCAGUAAAGCAAACUCCAUUAUUACAGUAUGUUUUGAAGAAUCUUCAUUUUUUUACCGGACGGCAACAAAAAACACUUAUCUUUGUAACAUAGAUAAUCACUCUCUUUAAGAGAGAAAUAGAUCCUUAUGGAUAGGAUAGGCUUAAAAACGAAGGUUCAUGCAGUCGGAGGAAUGACGGGAGGACUGUGGAACGAGCUUUUUGUAAGACGAUGCCGAAUGGCUUUUGGAAGUUGAUUUAUGUUGAACUCAAAGAAGUUGAAGAAAG (((.(((.....(((((.....(.(((....))).).....)))))((((((((((((.(((.(((((((.....((.......(((((((.......((......)).(((((((...(((((..((((((((((((((((.((((.((.(((((....))))).)).)))).)))))))))))))))).)))))..)))))))....)))))))((((((((((((((.((((((.(((..(.....)..)))......((((((((........((((.........)))).......)))))))).....))))))..((((((.(((((.(((.......))))))))......))))))..(((((...)))))...)))))))))))))).))........((((((((.....(((((((.....(((((.....)))))......)))..))))...)))))))).........)))))))...))).)))))).......)))))).))).)))..(((.((..((((((.((((.(((((.....)))))..)))).))))))..)).)))................. (-159.27) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 1027 120 71 211 162 NC_002950:PG0293|5end_secretion_activator_protein,_putative_328671..328901_NEGATIVE 726 470 422 68 20 NC_002950:PG2064|5end_hypothetical_protein_2160550..2160780_POSITIVE 645 486 441 120 75 NC_002950:PG1980|5end_hypothetical_protein_2067930..2068160_NEGATIVE 569 528 490 38 1 NC_002950:PG1904|5end_hypothetical_protein_2004761..2004991_NEGATIVE 536 377 336 175 134 NC_002950:PG0572|5end_hypothetical_protein_627571..627801_NEGATIVE 515 480 431 92 43 NC_002950:PG1799|5end_hypothetical_protein_1894499..1894729_POSITIVE 502 246 201 146 101 NC_002950:PG0722|5end_hypothetical_protein_774891..775121_NEGATIVE 489 479 431 113 65 NC_002950:PG0174|5end_pyridine_nucleotide-disulphide_oxidoreductase_family_protein_197628..197858_NEGATIVE 455 555 511 162 121 NC_002950:PG1750|5end_alpha-1,3/4-fucosidase,_putative_1835323..1835553_POSITIVE 444 550 506 192 146 NC_002950:PG0007|5end_hypothetical_protein_6913..7143_NEGATIVE 425 469 421 196 148 NC_002950:PG0081|5end_hypothetical_protein_93805..94035_POSITIVE 413 546 510 230 196 NC_002950:PG0300|5end_TPR_domain_protein_336570..336800_POSITIVE 385 466 422 66 22 NC_002950:PG0313|5end_hypothetical_protein_347366..347596_POSITIVE 378 118 71 197 146 NC_002950:PG0158|5end_competence_protein_F-related_protein_180175..180405_POSITIVE 367 90 41 111 56 NC_002950:PG0438|5end_hypothetical_protein_476884..477114_POSITIVE 356 120 71 208 144 NC_002950:PG1057|5end_hypothetical_protein_1123419..1123649_POSITIVE 349 551 515 192 157 NC_002950:PG0425|5end_esterase,_putative_463989..464219_NEGATIVE 347 299 251 228 183 NC_002950:PG1603|5end_HAM1_protein_1682165..1682395_POSITIVE 347 550 510 155 114 NC_002950:PG0496|5end_hypothetical_protein_537168..537398_POSITIVE 346 117 72 187 134 NC_002950:PG0986|5end_hypothetical_protein_1047426..1047656_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 669 386 348 74 36 NC_002950:PG1697|3end_type_II_restriction_endonuclease,_putative_1785074..1785224_POSITIVE 354 100 51 53 1 NC_002950:PG0397|3end_hypothetical_protein_434312..434462_NEGATIVE 344 117 79 130 93 NC_002950:PG0330|3end_DNA-binding_protein,_histone-like_family_364478..364628_NEGATIVE 342 109 61 130 91 NC_002950:PG0520|3end_chaperonin_GroEL_563618..563768_NEGATIVE 329 118 71 96 39 NC_002950:PG2068|3end_glycerol-3-phosphate_cytidylyltransferase_2164872..2165022_POSITIVE 327 430 381 55 14 NC_002950:PG0560|3end_hypothetical_protein_617748..617898_POSITIVE 323 414 375 41 3 NC_002950:PG0024|3end_redox-sensing_transcriptional_repressor_Rex_28468..28618_POSITIVE 321 430 385 46 2 NC_002950:PG0290|3end_hypothetical_protein_325534..325684_POSITIVE 317 120 73 58 5 NC_002950:PG1247|3end_3-dehydroquinate_synthase_1325585..1325735_POSITIVE 316 396 361 67 34 NC_002950:PG1055|3end_thiol_protease_1121202..1121352_NEGATIVE 316 430 381 60 20 NC_002950:PG0737|3end_hypothetical_protein_786546..786696_POSITIVE 316 128 81 66 23 NC_002950:PG0456|3end_PHP_N-terminal_domain_protein_499834..499984_POSITIVE 315 410 361 124 66 NC_002950:PG1778|3end_hypothetical_protein_1867922..1868072_POSITIVE 313 128 83 124 68 NC_002950:PG1154|3end_hypothetical_protein_1235697..1235847_NEGATIVE 313 117 72 72 11 NC_002950:PG0164|3end_hypothetical_protein_187081..187231_NEGATIVE 312 300 251 119 76 NC_002950:PG2144|3end_hypothetical_protein_2253290..2253440_POSITIVE 311 435 393 149 84 NC_002950:PG0775|3end_acyl-CoA_dehydrogenase_family_protein_827432..827582_NEGATIVE 310 517 479 104 61 NC_002950:PG2085|3end_tryptophanyl-tRNA_synthetase_2186595..2186745_POSITIVE 309 97 51 109 56 NC_002950:PG1175|3end_ABC_transporter,_ATP-binding_protein,_putative_1254170..1254320_NEGATIVE 309 336 292 75 32 NC_002950:PG0516|3end_hypothetical_protein_557937..558087_NEGATIVE