Origin IGS: caccttgattagaaacgtgattggccggctttgttcccttccgagaactacatgtaggtggagtacacctcgatcgaagaggcacaccataaacaacccctgttcggcgtaagaaaacgccaatgtattcgttccccgattagcgggttacacactaagatcttgggagttataggttattccgttcaggcaattgtatagggggcaatcctgcttctgcccggatcgaaccaacattgaaattcggattgcttttttgaccgaatgttgcagtccgtacaggaagatgggctataccacaaggcagatggcggtacaccgtagaggataacgggctatcccgtacagctcttcgagctacgctgtagagctcggcgaggtacgctctacagcgtagcgagccgagccgtagagttccgctccgggagccgtagaggtggccgagctgagccgtagagcgcagctcggtacgctctacggcgtagcccgagtcgctgtagggcgtagctcgaccccctttcggcgtatgttccgaatggctataaaacaatgcggattcgatctgaagaaaatatgcaatatcctgtttgtcagcgtatttcatttctcggttgagagatttcagcttcgagaggcttcgacatccaatgagacgtcaaactttttccctttcattttctgattcggttatagtcaatgccccaacaagagcttgatcgataaggcggttctcatgagaatcgacaccatatcgcttacatcgacctcacgttaaaaaagaaaacctgcttggagaaggattccaaacaggtgataagaaaggtgtaccgatatgcatccgaataaccggagatgaggtttgtgccctctttgtcaataacaaaacggcgcaagagag .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 ctctcttgcgccgttttgttattgacaaagagggcacaaacctcatctccggttattcggatgcatatcggtacacctttcttatcacctgtttggaatccttctccaagcaggttttcttttttaacgtgaggtcgatgtaagcgatatggtgtcgattctcatgagaaccgccttatcgatcaagctcttgttggggcattgactataaccgaatcagaaaatgaaagggaaaaagtttgacgtctcattggatgtcgaagcctctcgaagctgaaatctctcaaccgagaaatgaaatacgctgacaaacaggatattgcatattttcttcagatcgaatccgcattgttttatagccattcggaacatacgccgaaagggggtcgagctacgccctacagcgactcgggctacgccgtagagcgtaccgagctgcgctctacggctcagctcggccacctctacggctcccggagcggaactctacggctcggctcgctacgctgtagagcgtacctcgccgagctctacagcgtagctcgaagagctgtacgggatagcccgttatcctctacggtgtaccgccatctgccttgtggtatagcccatcttcctgtacggactgcaacattcggtcaaaaaagcaatccgaatttcaatgttggttcgatccgggcagaagcaggattgccccctatacaattgcctgaacggaataacctataactcccaagatcttagtgtgtaacccgctaatcggggaacgaatacattggcgttttcttacgccgaacaggggttgtttatggtgtgcctcttcgatcgaggtgtactccacctacatgtagttctcggaagggaacaaagccggccaatcacgtttctaatcaaggtg Mask Tandem Repeat Region ================================================ caccttgattagaaacgtgattggccggctttgttcccttccgagaactacatgtaggtggagtacacctcgatcgaagaggcacaccataaacaacccctgttcggcgtaagaaaacgccaatgtattcgttccccgattagcgggttacacactaagatcttgggagttataggttattccgttcaggcaattgtatagggggcaatcctgcttctgcccggatcgaaccaacattgaaattcggattgcttttttgaccgaatgttgcagtccgtacaggaagatgggctataccacaaggcagatggcggtacaccgtagaggataacgggctatcccgtacagctcttcgagctacgctgtagagctcggcgaggtacgctctacagcgtagcgagccgagccgtagagttccgctccgggagccgtagaggtggccgagctgagccgtagagcgcagctcggtacgctctacggcgtagcccgagtcgctgtagggcgtagctcgaccccctttcggcgtatgttccgaatggctataaaacaatgcggattcgatctgaagaaaatatgcaatatcctgtttgtcagcgtatttcatttctcggttgagagatttcagcttcgagaggcttcgacatccaatgagacgtcaaactttttccctttcattttctgattcggttatagtcaatgccccaacaagagcttgatcgataaggcggttctcatgagaatcgacaccatatcgcttacatcgacctcacgttaaaaaagaaaacctgcttggagaaggattccaaacaggtgataagaaaggtgtaccgatatgcatccgaataaccggagatgaggtttgtgccctctttgtcaataacaaaacggcgcaagagag Find is-nt database================================================ Query_seq: PG0237:PG0240|PG0237:PG0240:uracil-DNA glycosylase:hydrolase, haloacid dehalogenase-like family:-><-:275587..276484 898 caccttgattagaaacgtgattggccggctttgttcccttccgagaactacatgtaggtggagtacacctcgatcgaagaggcacaccataaacaacccctgttcggcgtaagaaaacgccaatgtattcgttccccgattagcgggttacacactaagatcttgggagttataggttattccgttcaggcaattgtatagggggcaatcctgcttctgcccggatcgaaccaacattgaaattcggattgcttttttgaccgaatgttgcagtccgtacaggaagatgggctataccacaaggcagatggcggtacaccgtagaggataacgggctatcccgtacagctcttcgagctacgctgtagagctcggcgaggtacgctctacagcgtagcgagccgagccgtagagttccgctccgggagccgtagaggtggccgagctgagccgtagagcgcagctcggtacgctctacggcgtagcccgagtcgctgtagggcgtagctcgaccccctttcggcgtatgttccgaatggctataaaacaatgcggattcgatctgaagaaaatatgcaatatcctgtttgtcagcgtatttcatttctcggttgagagatttcagcttcgagaggcttcgacatccaatgagacgtcaaactttttccctttcattttctgattcggttatagtcaatgccccaacaagagcttgatcgataaggcggttctcatgagaatcgacaccatatcgcttacatcgacctcacgttaaaaaagaaaacctgcttggagaaggattccaaacaggtgataagaaaggtgtaccgatatgcatccgaataaccggagatgaggtttgtgccctctttgtcaataacaaaacggcgcaagagag Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PG0237:PG0240|PG0237:PG0240:uracil-DNA glycosylase:hydrolase, haloacid dehalogenase-like family:-><-:275587..276484 898 caccttgattagaaacgtgattggccggctttgttcccttccgagaactacatgtaggtggagtacacctcgatcgaagaggcacaccataaacaacccctgttcggcgtaagaaaacgccaatgtattcgttccccgattagcgggttacacactaagatcttgggagttataggttattccgttcaggcaattgtatagggggcaatcctgcttctgcccggatcgaaccaacattgaaattcggattgcttttttgaccgaatgttgcagtccgtacaggaagatgggctataccacaaggcagatggcggtacaccgtagaggataacgggctatcccgtacagctcttcgagctacgctgtagagctcggcgaggtacgctctacagcgtagcgagccgagccgtagagttccgctccgggagccgtagaggtggccgagctgagccgtagagcgcagctcggtacgctctacggcgtagcccgagtcgctgtagggcgtagctcgaccccctttcggcgtatgttccgaatggctataaaacaatgcggattcgatctgaagaaaatatgcaatatcctgtttgtcagcgtatttcatttctcggttgagagatttcagcttcgagaggcttcgacatccaatgagacgtcaaactttttccctttcattttctgattcggttatagtcaatgccccaacaagagcttgatcgataaggcggttctcatgagaatcgacaccatatcgcttacatcgacctcacgttaaaaaagaaaacctgcttggagaaggattccaaacaggtgataagaaaggtgtaccgatatgcatccgaataaccggagatgaggtttgtgccctctttgtcaataacaaaacggcgcaagagag Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PG0237:PG0240|PG0237:PG0240:uracil-DNA glycosylase:hydrolase, haloacid dehalogenase-like family:-><-:275587..276484 898 caccttgattagaaacgtgattggccggctttgttcccttccgagaactacatgtaggtggagtacacctcgatcgaagaggcacaccataaacaacccctgttcggcgtaagaaaacgccaatgtattcgttccccgattagcgggttacacactaagatcttgggagttataggttattccgttcaggcaattgtatagggggcaatcctgcttctgcccggatcgaaccaacattgaaattcggattgcttttttgaccgaatgttgcagtccgtacaggaagatgggctataccacaaggcagatggcggtacaccgtagaggataacgggctatcccgtacagctcttcgagctacgctgtagagctcggcgaggtacgctctacagcgtagcgagccgagccgtagagttccgctccgggagccgtagaggtggccgagctgagccgtagagcgcagctcggtacgctctacggcgtagcccgagtcgctgtagggcgtagctcgaccccctttcggcgtatgttccgaatggctataaaacaatgcggattcgatctgaagaaaatatgcaatatcctgtttgtcagcgtatttcatttctcggttgagagatttcagcttcgagaggcttcgacatccaatgagacgtcaaactttttccctttcattttctgattcggttatagtcaatgccccaacaagagcttgatcgataaggcggttctcatgagaatcgacaccatatcgcttacatcgacctcacgttaaaaaagaaaacctgcttggagaaggattccaaacaggtgataagaaaggtgtaccgatatgcatccgaataaccggagatgaggtttgtgccctctttgtcaataacaaaacggcgcaagagag Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 caccttgattagaaacgtgattggccggctttgttcccttccgagaactacatgtaggtggagtacacctcgatcgaagaggcacaccataaacaacccctgttcggcgtaagaaaacgccaatgtattcgttccccgattagcgggttacacactaagatcttgggagttataggttattccgttcaggcaattgtatagggggcaatcctgcttctgcccggatcgaaccaacattgaaattcggattgcttttttgaccgaatgttgcagtccgtacaggaagatgggctataccacaaggcagatggcggtacaccgtagaggataacgggctatcccgtacagctcttcgagctacgctgtagagctcggcgaggtacgctctacagcgtagcgagccgagccgtagagttccgctccgggagccgtagaggtggccgagctgagccgtagagcgcagctcggtacgctctacggcgtagcccgagtcgctgtagggcgtagctcgaccccctttcggcgtatgttccgaatggctataaaacaatgcggattcgatctgaagaaaatatgcaatatcctgtttgtcagcgtatttcatttctcggttgagagatttcagcttcgagaggcttcgacatccaatgagacgtcaaactttttccctttcattttctgattcggttatagtcaatgccccaacaagagcttgatcgataaggcggttctcatgagaatcgacaccatatcgcttacatcgacctcacgttaaaaaagaaaacctgcttggagaaggattccaaacaggtgataagaaaggtgtaccgatatgcatccgaataaccggagatgaggtttgtgccctctttgtcaataacaaaacggcgcaagagag Predict ORF larger than 30AA ================================================ Protein_Len: 35 Strand: + Start: 5 End: 109 .... M I R N V I G R L C S L P R T T C R W S T P R S K R H T I N N P C S A ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 47 Strand: + Start: 58 End: 198 ......................................................... M E Y T S I E E A H H K Q P L F G V R K R Q C I R S P I S G L H T K I L G V I G Y S V Q A I V ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 50 Strand: + Start: 179 End: 328 .................................................................................................................................................................................. M P F R Q L Y R G Q S C F C P D R T N I E I R I A F L T E C C S P Y R K M G Y T T R Q M A V H R R G .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 42 Strand: + Start: 328 End: 453 ....................................................................................................................................................................................................................................................................................................................................... M T G Y P V Q L F E L R C R A R R G T L Y S V A S R A V E F R S G S R R G G R A E P ............................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 60 Strand: + Start: 437 End: 679 .................................................................................................................................................................................................................................................................................................................................................................................................................................................... M A E L S R R A Q L G T L Y G V A R V A V G R S S T P F R R M F R M A I K Q C G F D L K K I C N I L F V S V F H F S V E ........................................................................................................................................................................................................................... Protein_Len: 45 Strand: + Start: 579 End: 713 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M S C L S A Y F I S R L R D F S F E R L R H P M R R Q T F S L S F S D S V I V N A P T R A ......................................................................................................................................................................................... Protein_Len: 31 Strand: + Start: 751 End: 843 .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M A Y I D L T L K K K T C L E K D S K Q V I R K V Y R Y A S E ....................................................... Protein_Len: 37 Strand: + Start: 786 End: 896 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M L G E G F Q T G D K K G V P I C I R I T G D E V C A L F V N N K T A Q E .. Protein_Len: 38 Strand: - Start: 770 End: 883 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. T L F S F R S P S P N W V P S L F P T G I H M R I V P S S T Q A R K T L L M ............... Protein_Len: 45 Strand: - Start: 759 End: 893 ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M S R V N F F F V Q K S F S E L C T I L F T Y R Y A D S Y G S I L N T G E K D I V F R R M ..... Protein_Len: 39 Strand: - Start: 478 End: 594 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. P T A R T A T P R L E V G K R R I N R I A I F C H P N S R F F I H L I R N T M ................................................................................................................................................................................................................................................................................................................ Protein_Len: 47 Strand: - Start: 189 End: 329 ............................................................................................................................................................................................ A I T Y P A I R S R G P D F W C Q F E S Q K K S R I N C D T C S S P S Y W L A S P P V G Y L M ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: - Start: 173 End: 649 ............................................................................................................................................................................ R E V A Y G S D S Y P T A R G G K P T H E S H S Y F L A S E I Q L F Y A I D Q K D A Y K M E R N L S K L K S L S R C G M ......................................................................................................................................................................................................................................................... Protein_Len: 46 Strand: - Start: 151 End: 288 ...................................................................................................................................................... V S L D Q S N Y T I G N L C N Y L P C D Q K Q G S R V L M S I R I A K K V S H Q L G Y L F M .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 41 Strand: - Start: 51 End: 173 .................................................. M Y T S Y V E I S S A C W L C G R N P T L F R W H I R E G I L P N C V L I K P T M ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 41 Strand: - Start: 2 End: 124 . G Q N S V H N A P K T G K R S S C T P P T C R S R L P V G Y V V G T R R L F V G M ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 41 Strand: - Start: 1 End: 123 V K I L F T I P R S Q E R G L V V H L H L V G R D F L C V M F L G Q E A Y S F A M ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... caccttgattagaaacgtgattggccggctttgttcccttccgagaactacatgtaggtggagtacacctcgatcgaagaggcacaccataaacaacccctgttcggcgtaagaaaacgccaatgtattcgttccccgattagcgggttacacactaagatcttgggagttataggttattccgttcaggcaattgtatagggggcaatcctgcttctgcccggatcgaaccaacattgaaattcggattgcttttttgaccgaatgttgcagtccgtacaggaagatgggctataccacaaggcagatggcggtacaccgtagaggataacgggctatcccgtacagctcttcgagctacgctgtagagctcggcgaggtacgctctacagcgtagcgagccgagccgtagagttccgctccgggagccgtagaggtggccgagctgagccgtagagcgcagctcggtacgctctacggcgtagcccgagtcgctgtagggcgtagctcgaccccctttcggcgtatgttccgaatggctataaaacaatgcggattcgatctgaagaaaatatgcaatatcctgtttgtcagcgtatttcatttctcggttgagagatttcagcttcgagaggcttcgacatccaatgagacgtcaaactttttccctttcattttctgattcggttatagtcaatgccccaacaagagcttgatcgataaggcggttctcatgagaatcgacaccatatcgcttacatcgacctcacgttaaaaaagaaaacctgcttggagaaggattccaaacaggtgataagaaaggtgtaccgatatgcatccgaataaccggagatgaggtttgtgccctctttgtcaataacaaaacggcgcaagagag Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ caccttgattagaaacgtgattggccggctttgttcccttccgagaactacatgtaggtggagtacacctcgatcgaagaggcacaccataaacaacccctgttcggcgtaagaaaacgccaatgtattcgttccccgattagcgggttacacactaagatcttgggagttataggttattccgttcaggcaattgtatagggggcaatcctgcttctgcccggatcgaaccaacattgaaattcggattgcttttttgaccgaatgttgcagtccgtacaggaagatgggctataccacaaggcagatggcggtacaccgtagaggataacgggctatcccgtacagctcttcgagctacgctgtagagctcggcgaggtacgctctacagcgtagcgagccgagccgtagagttccgctccgggagccgtagaggtggccgagctgagccgtagagcgcagctcggtacgctctacggcgtagcccgagtcgctgtagggcgtagctcgaccccctttcggcgtatgttccgaatggctataaaacaatgcggattcgatctgaagaaaatatgcaatatcctgtttgtcagcgtatttcatttctcggttgagagatttcagcttcgagaggcttcgacatccaatgagacgtcaaactttttccctttcattttctgattcggttatagtcaatgccccaacaagagcttgatcgataaggcggttctcatgagaatcgacaccatatcgcttacatcgacctcacgttaaaaaagaaaacctgcttggagaaggattccaaacaggtgataagaaaggtgtaccgatatgcatccgaataaccggagatgaggtttgtgccctctttgtcaataacaaaacggcgcaagagag Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 74 HP_score: -3.5 Tail_Score: -5.0538 Start: 780 End: 804 Full_Region: tcttatcacctgttt ggaatccttct cca agcaggttttc ttttttaacgtgagg ...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ggaatccttctccaagcaggttttc.............................................................................................. TransTerm Strand: - Conf: 100 HP_score: -8.8 Tail_Score: -5.42198 Start: 785 End: 811 Full_Region: acacctttcttatca cctgtttgga atccttc tccaagcagg ttttcttttttaacg ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cctgtttggaatccttctccaagcagg....................................................................................... Find igs database================================================ Query_seq: PG0237:PG0240|PG0237:PG0240:uracil-DNA glycosylase:hydrolase, haloacid dehalogenase-like family:-><-:275587..276484 898 caccttgattagaaacgtgattggccggctttgttcccttccgagaactacatgtaggtggagtacacctcgatcgaagaggcacaccataaacaacccctgttcggcgtaagaaaacgccaatgtattcgttccccgattagcgggttacacactaagatcttgggagttataggttattccgttcaggcaattgtatagggggcaatcctgcttctgcccggatcgaaccaacattgaaattcggattgcttttttgaccgaatgttgcagtccgtacaggaagatgggctataccacaaggcagatggcggtacaccgtagaggataacgggctatcccgtacagctcttcgagctacgctgtagagctcggcgaggtacgctctacagcgtagcgagccgagccgtagagttccgctccgggagccgtagaggtggccgagctgagccgtagagcgcagctcggtacgctctacggcgtagcccgagtcgctgtagggcgtagctcgaccccctttcggcgtatgttccgaatggctataaaacaatgcggattcgatctgaagaaaatatgcaatatcctgtttgtcagcgtatttcatttctcggttgagagatttcagcttcgagaggcttcgacatccaatgagacgtcaaactttttccctttcattttctgattcggttatagtcaatgccccaacaagagcttgatcgataaggcggttctcatgagaatcgacaccatatcgcttacatcgacctcacgttaaaaaagaaaacctgcttggagaaggattccaaacaggtgataagaaaggtgtaccgatatgcatccgaataaccggagatgaggtttgtgccctctttgtcaataacaaaacggcgcaagagag Intra-Species Hit: Count: 8 Min: 1 Max: 898 Len: 898 Subject: NC_002950_PG0237_PG0240|uracil-DNA glycosylase:hydrolase, haloacid dehalogenase-like family|POSITIVE:NEGATIVE|[275587,276484]|898 HSP 1 e-value: 0.0 bit: 1780.0 Len: 898 Query Start:1 Query End:898 Subject Strand: POSITIVE Subject Start: 1 Subject End: 898 caccttgattagaaacgtgattggccggctttgttcccttccgagaactacatgtaggtggagtacacctcgatcgaagaggcacaccataaacaacccctgttcggcgtaagaaaacgccaatgtattcgttccccgattagcgggttacacactaagatcttgggagttataggttattccgttcaggcaattgtatagggggcaatcctgcttctgcccggatcgaaccaacattgaaattcggattgcttttttgaccgaatgttgcagtccgtacaggaagatgggctataccacaaggcagatggcggtacaccgtagaggataacgggctatcccgtacagctcttcgagctacgctgtagagctcggcgaggtacgctctacagcgtagcgagccgagccgtagagttccgctccgggagccgtagaggtggccgagctgagccgtagagcgcagctcggtacgctctacggcgtagcccgagtcgctgtagggcgtagctcgaccccctttcggcgtatgttccgaatggctataaaacaatgcggattcgatctgaagaaaatatgcaatatcctgtttgtcagcgtatttcatttctcggttgagagatttcagcttcgagaggcttcgacatccaatgagacgtcaaactttttccctttcattttctgattcggttatagtcaatgccccaacaagagcttgatcgataaggcggttctcatgagaatcgacaccatatcgcttacatcgacctcacgttaaaaaagaaaacctgcttggagaaggattccaaacaggtgataagaaaggtgtaccgatatgcatccgaataaccggagatgaggtttgtgccctctttgtcaataacaaaacggcgcaagagag caccttgattagaaacgtgattggccggctttgttcccttccgagaactacatgtaggtggagtacacctcgatcgaagaggcacaccataaacaacccctgttcggcgtaagaaaacgccaatgtattcgttccccgattagcgggttacacactaagatcttgggagttataggttattccgttcaggcaattgtatagggggcaatcctgcttctgcccggatcgaaccaacattgaaattcggattgcttttttgaccgaatgttgcagtccgtacaggaagatgggctataccacaaggcagatggcggtacaccgtagaggataacgggctatcccgtacagctcttcgagctacgctgtagagctcggcgaggtacgctctacagcgtagcgagccgagccgtagagttccgctccgggagccgtagaggtggccgagctgagccgtagagcgcagctcggtacgctctacggcgtagcccgagtcgctgtagggcgtagctcgaccccctttcggcgtatgttccgaatggctataaaacaatgcggattcgatctgaagaaaatatgcaatatcctgtttgtcagcgtatttcatttctcggttgagagatttcagcttcgagaggcttcgacatccaatgagacgtcaaactttttccctttcattttctgattcggttatagtcaatgccccaacaagagcttgatcgataaggcggttctcatgagaatcgacaccatatcgcttacatcgacctcacgttaaaaaagaaaacctgcttggagaaggattccaaacaggtgataagaaaggtgtaccgatatgcatccgaataaccggagatgaggtttgtgccctctttgtcaataacaaaacggcgcaagagag Subject: NC_002950_PG0890_PG0893|alkaline phosphatase, putative:hydroxylamine reductase|POSITIVE:NEGATIVE|[953164,954290]|1127 HSP 1 e-value: 1.0E-171 bit: 603.0 Len: 355 Query Start:102 Query End:456 Subject Strand: POSITIVE Subject Start: 197 Subject End: 549 .....................................................................................................gttcggcgtaagaaaacgccaatgtattcgttccccgattagcgggttacacactaagatcttgggagttataggttattccgttcaggcaattgtatagggggcaatcctgcttctgcccggatcgaaccaacattgaaattcggattgcttttttgaccgaatgttgcagtccgtacaggaagatgggctataccacaaggcagatggcggtacaccgtagaggataacgggctatcccgtacagctcttcgagctacgctgtagagctcggcgaggtacgctctacagcgtagcgagccgagccgtagagttccgctccgggagccgtagaggtggccgagctgagccgtag.......................................................................................................................................................................................................................................................................................................................................................................................................................................................... .....................................................................................................gttcggcgtaagaaaacgccaatgtattcgttccccgattagcgggttacacactaagatcttgggagttataggttgttccgttcaggcaattgtatagggggcaatcctgcttctgcccggatcggaccaacattgaaattcggattgctttt--gaccgaatgttgcagtccgcaccggaagatgggctataccacaaggcagatggcggtattccgtagaggataacgggctatcccatacggctcttcgagctacgctgtagagctcggcgaggtacgctctacagcgtagcgagccgagccgtagagttccgctccgtgagccgtagatgtggccgagctgagccgtag.......................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 1.0E-133 bit: 476.0 Len: 264 Query Start:448 Query End:711 Subject Strand: POSITIVE Subject Start: 585 Subject End: 848 ...............................................................................................................................................................................................................................................................................................................................................................................................................................................................gagccgtagagcgcagctcggtacgctctacggcgtagcccgagtcgctgtagggcgtagctcgaccccctttcggcgtatgttccgaatggctataaaacaatgcggattcgatctgaagaaaatatgcaatatcctgtttgtcagcgtatttcatttctcggttgagagatttcagcttcgagaggcttcgacatccaatgagacgtcaaactttttccctttcattttctgattcggttatagtcaatgccccaacaagag........................................................................................................................................................................................... ...............................................................................................................................................................................................................................................................................................................................................................................................................................................................gagccgtagagcgcagctcggtacgctctacggcgtagcccgagtcgctgtagggcgtagctcgaccccctttcggcgtatgttccgaatggctataaaacaatgcggattcgatctgaagaaaatatgcaatatgctgtttgtcagcgtatttcatttctcggttgagaaatttcagcttcgagaggcttcgacatccgatgagacgtcaaactttttccctttcattttctgattcgattatagtcaatatcccaacaagag........................................................................................................................................................................................... Subject: NC_002950_PG1297_PG1300|ribosomal protein S1:hypothetical protein|POSITIVE:NEGATIVE|[1377771,1378619]|849 HSP 1 e-value: 1.0E-157 bit: 555.0 Len: 358 Query Start:102 Query End:459 Subject Strand: POSITIVE Subject Start: 132 Subject End: 488 .....................................................................................................gttcggcgtaagaaaacgccaatgtattcgttccccgattagcgggttacacactaagatcttgggagttataggttattccgttcaggcaattgtatagggggcaatcctgcttctgcccggatcgaaccaacattgaaattcggattgcttttttgaccgaatgttgcagtccgtacaggaagatgggctataccacaaggc-agatggcggtacaccgtagaggataacgggctatcccgtacagctcttcgagctacgctgtagagctcggcgaggtacgctctacagcgtagcgagccgagccgtagagttccgctccgggagccgtagaggtggccgagctgagccgtagagc....................................................................................................................................................................................................................................................................................................................................................................................................................................................... .....................................................................................................gttcggcgtaagaaaacgccaatgtattcgttccctgattagcggtttacacactaagatcttgggagttataggttgttccgttcaggcaattgtatagggggcaatcctgcttttgcttggatcgaaccaacattgaaattcggattgc--ttttgaccgaatgttgcagtccgtacagggagatgggctataccacagggcaagatggcggtactccatagaggataacgggctatcccgtacagctcttcgagctacgctgtagagcccggcgcggtgagccctacagcgtagcgagccgagccgtagagttccgctccgggagccgtagaggtggccgagctgagccgtagagc....................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 4.0E-82 bit: 307.0 Len: 214 Query Start:448 Query End:661 Subject Strand: POSITIVE Subject Start: 521 Subject End: 735 ...............................................................................................................................................................................................................................................................................................................................................................................................................................................................gagccgtagagcgcagctcggtacgctctacggcgtagcccgagtcgctgtagggcgtagctcgaccccctttcggcgtatgttccgaatggctataaaacaatgcggattcgatctgaag-aaaatatgcaatatcctgtttgtcagcgtatttcatttctcggttgagagatttcagcttcgagaggcttcgacatccaatgagacgtcaaac............................................................................................................................................................................................................................................. ...............................................................................................................................................................................................................................................................................................................................................................................................................................................................gagccgtagagcgcagctcggtacgctctacggcgtagcccgagtcgctgtagggcgtagctcgaccccccttcggagtatattccgaacggctataaaacaatgaggattcgatctgaagaaaaacatgcaatatgctgtttgtcagcgtatttcacttctcagttcaaagatttcagcttcgagaggctccgacatccgatgagacgtcaaac............................................................................................................................................................................................................................................. Subject: NC_002950_PG1190_PG1195|glycerate dehydrogenase:8-amino-7-oxononanoate synthase|POSITIVE:POSITIVE|[1273206,1274118]|913 HSP 1 e-value: 1.0E-147 bit: 523.0 Len: 355 Query Start:102 Query End:456 Subject Strand: NEGATIVE Subject Start: 437 Subject End: 789 .....................................................................................................gttcggcgtaagaaaacgccaatgtattcgttccccgattagcgggttacacactaagatcttgggagttataggttattccgttcaggcaattgtatagggggcaatcctgcttctgcccggatcgaaccaacattgaaattcggattgcttttttgaccgaatgttgcagtccgtacaggaagatgggctataccacaaggcagatggcggtacaccgtagaggataacgggctatcccgtacagctcttcgagctacgctgtagagctcggcgaggtacgctctacagcgtagcgagccgagccgtagagttccgctccgggagccgtagaggtggccgagctgagccgtag.......................................................................................................................................................................................................................................................................................................................................................................................................................................................... .....................................................................................................gttcggcgtaagaaaacgccaatgtattcgttccaagattagcggttaacgcactaatattttggaagttataggttgttctgttcaggcaattgtatagggggcaatcctgcttctgcctggatcgaaccaacattgaaattcggattgctttt--gaccgaatgttgcagtccgtatagggagatgggctataccacagggcagatggcggtactccgtagaggatgacgagctatcccgtacggctcttcgagctacgctgtagagctcggcgaggtacgccctacagcgtagcgagccgagccgtagagttccgctccgtgagccgtagaggtggccgagctgagccgtag.......................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 1.0E-126 bit: 454.0 Len: 317 Query Start:448 Query End:764 Subject Strand: NEGATIVE Subject Start: 86 Subject End: 401 ...............................................................................................................................................................................................................................................................................................................................................................................................................................................................gagccgtagagcgcagctcggtacgctctacggcgtagcccgagtcgctgtagggcgtagctcgaccccctttcggcgtatgttccgaatggctataaaacaatgcggattcgatctgaagaaaatatgcaatatcctgtttgtcagcgtatttcatttctcggttgagagatttcagcttcgagaggcttcgacatccaatgagacgtcaaactttttccctttcattttctgattcggttatagtcaatgccccaacaagagcttgatcgataaggcggttctcatgagaatcgacaccatatcgcttacatcga...................................................................................................................................... ...............................................................................................................................................................................................................................................................................................................................................................................................................................................................gagccgtagagcgcagctcggtacgctctacggcgtagcccgagtcgctgtagggcgtagctcgaccccccttcggcatatgttccgaacggctataaaacaatgcggattcaatccaggaaaaatatgcaatatgctgtttatcagcatatttcatttctcagttgaaagatttcagcttcgagaggcttcgacatccgatgagacttcaaactttttccctttcattttctga-tcggttatagtcaatgccccaacaagagcttgatcgataaggcggctcttatgagaatcggcaccgtatcgcttacatcga...................................................................................................................................... Subject: NC_002950_PG1954_PG1956|NAD dependent epimerase/reductase-related protein:4-hydroxybutyrate CoA-transferase|POSITIVE:NEGATIVE|[2045673,2046304]|632 HSP 1 e-value: 1.0E-104 bit: 381.0 Len: 264 Query Start:448 Query End:711 Subject Strand: POSITIVE Subject Start: 254 Subject End: 517 ...............................................................................................................................................................................................................................................................................................................................................................................................................................................................gagccgtagagcgcagctcggtacgctctacggcgtagcccgagtcgctgtagggcgtagctcgaccccctttcggcgtatgttccgaatggctataaaacaatgcggattcgatctgaagaaaatatgcaatatcctgtttgtcagcgtatttcatttctcggttgagagatttcagcttcgagaggcttcgacatccaatgagacgtcaaactttttccctttcattttctgattcggttatagtcaatgccccaacaagag........................................................................................................................................................................................... ...............................................................................................................................................................................................................................................................................................................................................................................................................................................................gagccgtagagcgcagctcggtacgctctacggcgtagcccgagtcgctgtagggcgtagctcgaccccctttcggcgtatgttccgaacggctataaaacaatgcggattcgatccaagaaaaacatgcaatatgctgtttgtcaatgtatttcatttgtctgttgagaggtttcagcttcgagaggctccgacgtccgatgagacgtcaaactttttccctttcattttctgattcggttatagtcaatatcccatcaagag........................................................................................................................................................................................... HSP 2 e-value: 4.0E-51 bit: 204.0 Len: 135 Query Start:264 Query End:398 Subject Strand: POSITIVE Subject Start: 114 Subject End: 248 .......................................................................................................................................................................................................................................................................aatgttgcagtccgtacaggaagatgggctataccacaaggcagatggcggtacaccgtagaggataacgggctatcccgtacagctcttcgagctacgctgtagagctcggcgaggtacgctctacagcgtagc.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... .......................................................................................................................................................................................................................................................................aatgttacagtccgtacagaaagatgggctataccatagggcagatggcggtacaccatagaggatgacgagctatcccgtacggctcttcgagctacgctgtagagctcggcgaggtacgctctacagcgtagc.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 3 e-value: 6.0E-7 bit: 58.0 Len: 41 Query Start:736 Query End:776 Subject Strand: POSITIVE Subject Start: 517 Subject End: 557 ...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gagaatcgacaccatatcgcttacatcgacctcacgttaaa.......................................................................................................................... ...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gagaatcggcaccatatcgcttacattgaactcacgttaaa.......................................................................................................................... Subject: NC_002950_PG1881_PG1884|hypothetical protein:alpha-L-fucosidase precursor, putative|POSITIVE:NEGATIVE|[1978107,1979057]|951 HSP 1 e-value: 1.0E-101 bit: 371.0 Len: 247 Query Start:448 Query End:694 Subject Strand: POSITIVE Subject Start: 584 Subject End: 829 ...............................................................................................................................................................................................................................................................................................................................................................................................................................................................gagccgtagagcgcagctcggtacgctctacggcgtagcccgagtcgctgtagggcgtagctcgaccccctttcggcgtatgttccgaatggctataaaacaatgcggattcgatctgaagaaaatatgcaatatcctgtttgtcagcgtatttcatttctcggttgagagatttcagcttcgagaggcttcgacatccaatgagacgtcaaactttttccctttcattttctgattcggttatagt............................................................................................................................................................................................................ ...............................................................................................................................................................................................................................................................................................................................................................................................................................................................gagccgtagagcgcagctcggtacgctctacggcgtagcccgagtcgctgtagggcgtagctcgaccccctttcggagtatgttccgaacggctataaaacaatgcggattcgatccaagaaaaacatgcaatatgctgtttgtcaacgtatttcatttctcggttgagagatttcagcttcgggagacttcgacatccgatgagacgtcaaattttttccctttcattttctga-tcggttatagt............................................................................................................................................................................................................ HSP 2 e-value: 3.0E-98 bit: 361.0 Len: 250 Query Start:210 Query End:459 Subject Strand: POSITIVE Subject Start: 302 Subject End: 551 .................................................................................................................................................................................................................cctgcttctgcccggatcgaaccaacattgaaattcggattgcttttttgaccgaatgttgcagtccgtacaggaagatgggctataccacaaggcagatggcggtacaccgtagaggataacgggctatcccgtacagctcttcgagctacgctgtagagctcggcgaggtacgctctacagcgtagcgagccgagccgtagagttccgctccgggagccgtagaggtggccgagctgagccgtagagc....................................................................................................................................................................................................................................................................................................................................................................................................................................................... .................................................................................................................................................................................................................cctgcttctgcttggatcgaaccaacattgaaattcggattgcttttttgaccgaatgttacagtccgtacagaaagatgggctataccatagggcacatggaggtactccgtaggggatgacgagctatcccgtacagctcttcgagctacgctgtagagctcagcgaggtacgccctacagcgtagcgagccgagccgtagagttccgctccgggagctgtagaggtggccgagccgagccctagagc....................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: NC_002950_PG1837_PG1840|hemagglutinin protein HagA:hypothetical protein|POSITIVE:POSITIVE|[1936795,1937241]|447 HSP 1 e-value: 2.0E-86 bit: 321.0 Len: 186 Query Start:274 Query End:459 Subject Strand: NEGATIVE Subject Start: 245 Subject End: 430 .................................................................................................................................................................................................................................................................................tccgtacaggaagatgggctataccacaaggcagatggcggtacaccgtagaggataacgggctatcccgtacagctcttcgagctacgctgtagagctcggcgaggtacgctctacagcgtagcgagccgagccgtagagttccgctccgggagccgtagaggtggccgagctgagccgtagagc....................................................................................................................................................................................................................................................................................................................................................................................................................................................... .................................................................................................................................................................................................................................................................................tccgaacaggaagatgggctataccacagggcagatggtggtactccgtagaggataacgggctatcccgtacggctcttcgagctacgctgtagagctcagcgaggtacgctctacagcgtagcgagccgagccgtagagttccgctccgggagccgtagaggtggccgagctgagccgtagagc....................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 2.0E-43 bit: 178.0 Len: 106 Query Start:448 Query End:553 Subject Strand: NEGATIVE Subject Start: 107 Subject End: 212 ...............................................................................................................................................................................................................................................................................................................................................................................................................................................................gagccgtagagcgcagctcggtacgctctacggcgtagcccgagtcgctgtagggcgtagctcgaccccctttcggcgtatgttccgaatggctataaaacaatgc......................................................................................................................................................................................................................................................................................................................................................... ...............................................................................................................................................................................................................................................................................................................................................................................................................................................................gagccgtagagcgcagctcggtacgctctacggcgtagcccgagtcgctgtagggcgtagctcgacccccttccggagtatattccgaacggctataaaacaatgc......................................................................................................................................................................................................................................................................................................................................................... Subject: NC_002950_PG1174_PG1175|thioesterase family protein:ABC transporter, ATP-binding protein, putative|NEGATIVE:NEGATIVE|[1253798,1254259]|462 HSP 1 e-value: 5.0E-29 bit: 131.0 Len: 122 Query Start:652 Query End:773 Subject Strand: POSITIVE Subject Start: 338 Subject End: 459 ...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gacgtcaaactttttccctttcattttctgattcggttatagtcaatgccccaacaagagcttgatcgataaggcggttctcatgagaatcgacaccatatcgcttacatcgacctcacgtt............................................................................................................................. ...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gacggcaaacttattccctttcattttccaattcggttatagtcaatatcccaacaagtgtttgatcgatatggcggatcttatgagagtcggcaccatatcgcttacatcgaactcacgtt............................................................................................................................. Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ CACCUUGAUUAGAAACGUGAUUGGCCGGCUUUGUUCCCUUCCGAGAACUACAUGUAGGUGGAGUACACCUCGAUCGAAGAGGCACACCAUAAACAACCCCUGUUCGGCGUAAGAAAACGCCAAUGUAUUCGUUCCCCGAUUAGCGGGUUACACACUAAGAUCUUGGGAGUUAUAGGUUAUUCCGUUCAGGCAAUUGUAUAGGGGGCAAUCCUGCUUCUGCCCGGAUCGAACCAACAUUGAAAUUCGGAUUGCUUUUUUGACCGAAUGUUGCAGUCCGUACAGGAAGAUGGGCUAUACCACAAGGCAGAUGGCGGUACACCGUAGAGGAUAACGGGCUAUCCCGUACAGCUCUUCGAGCUACGCUGUAGAGCUCGGCGAGGUACGCUCUACAGCGUAGCGAGCCGAGCCGUAGAGUUCCGCUCCGGGAGCCGUAGAGGUGGCCGAGCUGAGCCGUAGAGCGCAGCUCGGUACGCUCUACGGCGUAGCCCGAGUCGCUGUAGGGCGUAGCUCGACCCCCUUUCGGCGUAUGUUCCGAAUGGCUAUAAAACAAUGCGGAUUCGAUCUGAAGAAAAUAUGCAAUAUCCUGUUUGUCAGCGUAUUUCAUUUCUCGGUUGAGAGAUUUCAGCUUCGAGAGGCUUCGACAUCCAAUGAGACGUCAAACUUUUUCCCUUUCAUUUUCUGAUUCGGUUAUAGUCAAUGCCCCAACAAGAGCUUGAUCGAUAAGGCGGUUCUCAUGAGAAUCGACACCAUAUCGCUUACAUCGACCUCACGUUAAAAAAGAAAACCUGCUUGGAGAAGGAUUCCAAACAGGUGAUAAGAAAGGUGUACCGAUAUGCAUCCGAAUAACCGGAGAUGAGGUUUGUGCCCUCUUUGUCAAUAACAAAACGGCGCAAGAGAG (((.((.......)).))).(((((((..((((((..(((((((((..(((((((..((((.((...((((.......)))).)).))))..))...........(((((......))))).)))))...((..((((.....))))..)).........))))))))).....((((..((((..(((((((((((.......)))))..)))..)))..))))...))))...(((((....((((((((...(((....)))....)))))))).....(((((.((((...(((.((..(((.....(((((((((...((((...(((((....)))))..(((((((.(((((((((((.((((...((((((.((((((((((((((....((((.((((......)))).))))((((.((((((((((((.((((((((.((......)).))))))))))).)))))))))....))))...)))))))))))))).)))).))..))))))))))).))))....(((((((((...(((.((((......((((.(((...(((.(((((.(((.....))).))))).)))))))))).((((((.....(((((....)))))..(((.((......)).)))...........))))))...)))))))...)))))))))..........)))))))(((.(((((.(((((((((....)))))))...)).))))).)))......))))...............(((((.((((((.....)))))).))))).........)))))))))...))).((((......))))..)).)))....))))))))).))))))))))).)))).)))..... (-323.40) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ CUCUCUUGCGCCGUUUUGUUAUUGACAAAGAGGGCACAAACCUCAUCUCCGGUUAUUCGGAUGCAUAUCGGUACACCUUUCUUAUCACCUGUUUGGAAUCCUUCUCCAAGCAGGUUUUCUUUUUUAACGUGAGGUCGAUGUAAGCGAUAUGGUGUCGAUUCUCAUGAGAACCGCCUUAUCGAUCAAGCUCUUGUUGGGGCAUUGACUAUAACCGAAUCAGAAAAUGAAAGGGAAAAAGUUUGACGUCUCAUUGGAUGUCGAAGCCUCUCGAAGCUGAAAUCUCUCAACCGAGAAAUGAAAUACGCUGACAAACAGGAUAUUGCAUAUUUUCUUCAGAUCGAAUCCGCAUUGUUUUAUAGCCAUUCGGAACAUACGCCGAAAGGGGGUCGAGCUACGCCCUACAGCGACUCGGGCUACGCCGUAGAGCGUACCGAGCUGCGCUCUACGGCUCAGCUCGGCCACCUCUACGGCUCCCGGAGCGGAACUCUACGGCUCGGCUCGCUACGCUGUAGAGCGUACCUCGCCGAGCUCUACAGCGUAGCUCGAAGAGCUGUACGGGAUAGCCCGUUAUCCUCUACGGUGUACCGCCAUCUGCCUUGUGGUAUAGCCCAUCUUCCUGUACGGACUGCAACAUUCGGUCAAAAAAGCAAUCCGAAUUUCAAUGUUGGUUCGAUCCGGGCAGAAGCAGGAUUGCCCCCUAUACAAUUGCCUGAACGGAAUAACCUAUAACUCCCAAGAUCUUAGUGUGUAACCCGCUAAUCGGGGAACGAAUACAUUGGCGUUUUCUUACGCCGAACAGGGGUUGUUUAUGGUGUGCCUCUUCGAUCGAGGUGUACUCCACCUACAUGUAGUUCUCGGAAGGGAACAAAGCCGGCCAAUCACGUUUCUAAUCAAGGUG .........((((...(((..........((((.......))))...(((((....))))).)))...)))).((((((..(((..(((((((((((.......)))))))))))..........((((((((((((.(((.((((.(((....(((.(((((.(((((..((......)).(((.(((.(((..(((((...........((...(((.....)))..)).......((((((((((....))))))))))))))).)))))))))....)))))...))))).))).))))))).)))..((((..((((.(((.........(((((((((.((((((..........(((((((......((((.(..(((((((((((..((((...........))))...(((((((((((((......)))))))))))))..))))))))).))..).))))..(((((((((........(((((..(..(((((((((((((((............)))))))))))))))..)..)))))((((((((....((((........))))((((((((..........))))))))........))))))))...))))....)))))............)))))))..)))))).))))))))).((((((........))))))..))).))))..))))...((........(((((.(((.........((((((..((((.....))))..))..)))).(((((((......)))))))...))))))))....((((..((((.......))))..))))...))........((((((....)))))).....)))))..)))))))..)))..)))))) (-324.70) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 1059 380 331 215 166 NC_002950:PG1840|5end_hypothetical_protein_1937102..1937332_POSITIVE 622 489 441 57 12 NC_002950:PG1992|5end_glucose-inhibited_division_protein_A_2081410..2081640_POSITIVE 527 460 412 107 52 NC_002950:PG1006|5end_hypothetical_protein_1066478..1066708_NEGATIVE 516 408 361 215 166 NC_002950:PG1269|5end_delta-1-pyrroline-5-carboxylate_dehydrogenase_1349201..1349431_NEGATIVE 512 480 433 201 149 NC_002950:PG0607|5end_hypothetical_protein_662552..662782_POSITIVE 494 480 439 55 5 NC_002950:PG1022|5end_hypothetical_protein_1083537..1083767_POSITIVE 494 468 421 203 146 NC_002950:PG0071|5end_UDP-3-O-acyl-GlcNAc_deacetylase/beta-hydroxyacyl-[acyl_carrier_protein]_dehydratase_FabZ_86119..86349_NEGATIVE 493 470 421 143 84 NC_002950:PG0980|5end_hypothetical_protein_1040897..1041127_POSITIVE 490 437 397 183 135 NC_002950:PG0327|5end_hypothetical_protein_362061..362291_NEGATIVE 488 523 481 208 157 NC_002950:PG0595|5end_30S_ribosomal_protein_S6_653008..653238_POSITIVE 481 480 438 198 157 NC_002950:PG1968|5end_hypothetical_protein_2058564..2058794_NEGATIVE 477 450 401 179 118 NC_002950:PG0809|5end_hypothetical_protein_872014..872244_NEGATIVE 476 450 401 68 5 NC_002950:PG2054|5end_lipoprotein_PG3_2152014..2152244_NEGATIVE 472 440 391 65 2 NC_002950:PG1731|5end_3-dehydroquinate_dehydratase_1820103..1820333_NEGATIVE 467 380 334 51 1 NC_002950:PG0223|5end_exonuclease_257610..257840_NEGATIVE 467 469 421 203 160 NC_002950:PG0093|5end_HlyD_family_secretion_protein_109638..109868_NEGATIVE 466 450 401 117 59 NC_002950:PG0145|5end_hypothetical_protein_167831..168061_POSITIVE 466 448 401 207 136 NC_002950:PG0141|5end_spoOJ_protein_164747..164977_NEGATIVE 458 470 421 191 130 NC_002950:PG1959|5end_ribosomal_protein_L33_2048405..2048635_NEGATIVE 454 469 423 62 1 NC_002950:PG1902|5end_uridylate_kinase_2002147..2002377_NEGATIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 628 770 724 84 38 NC_002950:PG1175|3end_ABC_transporter,_ATP-binding_protein,_putative_1254170..1254320_NEGATIVE 529 367 324 52 8 NC_002950:PG0261|3end_ISPg3,_transposase_293862..294012_NEGATIVE 527 460 412 67 12 NC_002950:PG1007|3end_transcriptional_regulator,_GntR_family_1066518..1066668_NEGATIVE 516 408 361 138 89 NC_002950:PG1270|3end_hypothetical_protein_1349278..1349428_NEGATIVE 490 437 397 89 41 NC_002950:PG0328|3end_imidazolonepropionase_362155..362305_NEGATIVE 488 523 481 111 60 NC_002950:PG0594|3end_RNA_polymerase_sigma-70_factor_652991..653141_POSITIVE 484 497 451 141 86 NC_002950:PG0569|3end_hypothetical_protein_624697..624847_NEGATIVE 481 480 438 149 108 NC_002950:PG1969|3end_hypothetical_protein_2058613..2058763_NEGATIVE 467 470 422 113 48 NC_002950:PG1391|3end_hypothetical_protein_1472961..1473111_POSITIVE 465 469 421 148 110 NC_002950:PG0094|3end_outer_membrane_efflux_protein,_putative_109688..109838_NEGATIVE 446 494 451 104 52 NC_002950:PG1012|3end_tRNA-i(6)A37_modification_enzyme_MiaB_1070089..1070239_NEGATIVE 444 468 422 148 97 NC_002950:PG1859|3end_glycerate_kinase_family_protein_1957174..1957324_NEGATIVE 442 480 436 73 19 NC_002950:PG0459|3end_ISPg5,_transposase_Orf1_501517..501667_NEGATIVE 439 428 383 143 99 NC_002950:PG2117|3end_30S_ribosomal_protein_S16_2225235..2225385_NEGATIVE 439 429 382 112 55 NC_002950:PG0745|3end_lactoylglutathione_lyase,_putative_791982..792132_NEGATIVE 438 470 424 86 33 NC_002950:PG0498|3end_S-ribosylhomocysteinase_538527..538677_POSITIVE 437 467 422 121 63 NC_002950:PG1975|3end_hemagglutinin_protein_HagC_2064350..2064500_POSITIVE 437 774 734 41 1 NC_002950:PG1884|3end_alpha-L-fucosidase_precursor,_putative_1978968..1979118_NEGATIVE 436 459 413 53 6 NC_002950:PG2110|3end_thiamine_biosynthesis_protein_ThiC_2219449..2219599_NEGATIVE 436 449 402 151 104 NC_002950:PG0877|3end_hypothetical_protein_940838..940988_NEGATIVE