Origin IGS: ttcgttttttttttgtttggttaagtgaattatggtgattattctcgcgttgttctttttcttgagccatgacgatgtgcaaccacggggaaaatctcccgggaggtaccacgaaggccgaaaggcttgagatttgaagggcgaaatgcctcccgatacgaagcgtggggaggtaatactataaagccctgaggggttatactataaagggtggaggcttttaagtataaagtgcggagacttgatatttgcaggtcttcggcggttttgttcaggtgcggacaaacgtcttcccgatgatgctccgaaaagagatatgagtgggcaaaaccgatacgctgcgagacttcccgatggaggccttgcagaggttgtaacaggctgtttgtcagccttttacaaatgtaaataggggaggggtaaaatgcctttattcggcattccgacagctgctacggggctatcgtcagtagtaaggatttgagaggatttcaaacggaaaaagcgcaaagaacgacttggtatgcagtcgtccgcgaaggtggttttctttgcttctatgtcccgatacatggttcccgatgataaatgtaattgagagagtgccaaagttagaaaatatattcagacgatcgaactctttttccgacctgtataagattaacgattttatattatggaaacgcttgtaacacccggtggataaagaggggcatgaagtttcccatggcaagtttt .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 aaaacttgccatgggaaacttcatgcccctctttatccaccgggtgttacaagcgtttccataatataaaatcgttaatcttatacaggtcggaaaaagagttcgatcgtctgaatatattttctaactttggcactctctcaattacatttatcatcgggaaccatgtatcgggacatagaagcaaagaaaaccaccttcgcggacgactgcataccaagtcgttctttgcgctttttccgtttgaaatcctctcaaatccttactactgacgatagccccgtagcagctgtcggaatgccgaataaaggcattttacccctcccctatttacatttgtaaaaggctgacaaacagcctgttacaacctctgcaaggcctccatcgggaagtctcgcagcgtatcggttttgcccactcatatctcttttcggagcatcatcgggaagacgtttgtccgcacctgaacaaaaccgccgaagacctgcaaatatcaagtctccgcactttatacttaaaagcctccaccctttatagtataacccctcagggctttatagtattacctccccacgcttcgtatcgggaggcatttcgcccttcaaatctcaagcctttcggccttcgtggtacctcccgggagattttccccgtggttgcacatcgtcatggctcaagaaaaagaacaacgcgagaataatcaccataattcacttaaccaaacaaaaaaaaaacgaa Mask Tandem Repeat Region ================================================ ttcgttttttttttgtttggttaagtgaattatggtgattattctcgcgttgttctttttcttgagccatgacgatgtgcaaccacggggaaaatctcccgggaggtaccacgaaggccgaaaggcttgagatttgaagggcgaaatgcctcccgatacgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaggcttttaagtataaagtgcggagacttgatatttgcaggtcttcggcggttttgttcaggtgcggacaaacgtcttcccgatgatgctccgaaaagagatatgagtgggcaaaaccgatacgctgcgagacttcccgatggaggccttgcagaggttgtaacaggctgtttgtcagccttttacaaatgtaaataggggaggggtaaaatgcctttattcggcattccgacagctgctacggggctatcgtcagtagtaaggatttgagaggatttcaaacggaaaaagcgcaaagaacgacttggtatgcagtcgtccgcgaaggtggttttctttgcttctatgtcccgatacatggttcccgatgataaatgtaattgagagagtgccaaagttagaaaatatattcagacgatcgaactctttttccgacctgtataagattaacgattttatattatggaaacgcttgtaacacccggtggataaagaggggcatgaagtttcccatggcaagtttt Find is-nt database================================================ Query_seq: PG0222:PG0223|PG0222:PG0223:DNA-binding protein, histone-like family:exonuclease:<-<-:256471..257208 738 ttcgttttttttttgtttggttaagtgaattatggtgattattctcgcgttgttctttttcttgagccatgacgatgtgcaaccacggggaaaatctcccgggaggtaccacgaaggccgaaaggcttgagatttgaagggcgaaatgcctcccgatacgaagcgtggggaggtaatactataaagccctgaggggttatactataaagggtggaggcttttaagtataaagtgcggagacttgatatttgcaggtcttcggcggttttgttcaggtgcggacaaacgtcttcccgatgatgctccgaaaagagatatgagtgggcaaaaccgatacgctgcgagacttcccgatggaggccttgcagaggttgtaacaggctgtttgtcagccttttacaaatgtaaataggggaggggtaaaatgcctttattcggcattccgacagctgctacggggctatcgtcagtagtaaggatttgagaggatttcaaacggaaaaagcgcaaagaacgacttggtatgcagtcgtccgcgaaggtggttttctttgcttctatgtcccgatacatggttcccgatgataaatgtaattgagagagtgccaaagttagaaaatatattcagacgatcgaactctttttccgacctgtataagattaacgattttatattatggaaacgcttgtaacacccggtggataaagaggggcatgaagtttcccatggcaagtttt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PG0222:PG0223|PG0222:PG0223:DNA-binding protein, histone-like family:exonuclease:<-<-:256471..257208 738 ttcgttttttttttgtttggttaagtgaattatggtgattattctcgcgttgttctttttcttgagccatgacgatgtgcaaccacggggaaaatctcccgggaggtaccacgaaggccgaaaggcttgagatttgaagggcgaaatgcctcccgatacgaagcgtggggaggtaatactataaagccctgaggggttatactataaagggtggaggcttttaagtataaagtgcggagacttgatatttgcaggtcttcggcggttttgttcaggtgcggacaaacgtcttcccgatgatgctccgaaaagagatatgagtgggcaaaaccgatacgctgcgagacttcccgatggaggccttgcagaggttgtaacaggctgtttgtcagccttttacaaatgtaaataggggaggggtaaaatgcctttattcggcattccgacagctgctacggggctatcgtcagtagtaaggatttgagaggatttcaaacggaaaaagcgcaaagaacgacttggtatgcagtcgtccgcgaaggtggttttctttgcttctatgtcccgatacatggttcccgatgataaatgtaattgagagagtgccaaagttagaaaatatattcagacgatcgaactctttttccgacctgtataagattaacgattttatattatggaaacgcttgtaacacccggtggataaagaggggcatgaagtttcccatggcaagtttt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PG0222:PG0223|PG0222:PG0223:DNA-binding protein, histone-like family:exonuclease:<-<-:256471..257208 738 ttcgttttttttttgtttggttaagtgaattatggtgattattctcgcgttgttctttttcttgagccatgacgatgtgcaaccacggggaaaatctcccgggaggtaccacgaaggccgaaaggcttgagatttgaagggcgaaatgcctcccgatacgaagcgtggggaggtaatactataaagccctgaggggttatactataaagggtggaggcttttaagtataaagtgcggagacttgatatttgcaggtcttcggcggttttgttcaggtgcggacaaacgtcttcccgatgatgctccgaaaagagatatgagtgggcaaaaccgatacgctgcgagacttcccgatggaggccttgcagaggttgtaacaggctgtttgtcagccttttacaaatgtaaataggggaggggtaaaatgcctttattcggcattccgacagctgctacggggctatcgtcagtagtaaggatttgagaggatttcaaacggaaaaagcgcaaagaacgacttggtatgcagtcgtccgcgaaggtggttttctttgcttctatgtcccgatacatggttcccgatgataaatgtaattgagagagtgccaaagttagaaaatatattcagacgatcgaactctttttccgacctgtataagattaacgattttatattatggaaacgcttgtaacacccggtggataaagaggggcatgaagtttcccatggcaagtttt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 ttcgttttttttttgtttggttaagtgaattatggtgattattctcgcgttgttctttttcttgagccatgacgatgtgcaaccacggggaaaatctcccgggaggtaccacgaaggccgaaaggcttgagatttgaagggcgaaatgcctcccgatacgaagcgtggggaggtaatactataaagccctgaggggttatactataaagggtggaggcttttaagtataaagtgcggagacttgatatttgcaggtcttcggcggttttgttcaggtgcggacaaacgtcttcccgatgatgctccgaaaagagatatgagtgggcaaaaccgatacgctgcgagacttcccgatggaggccttgcagaggttgtaacaggctgtttgtcagccttttacaaatgtaaataggggaggggtaaaatgcctttattcggcattccgacagctgctacggggctatcgtcagtagtaaggatttgagaggatttcaaacggaaaaagcgcaaagaacgacttggtatgcagtcgtccgcgaaggtggttttctttgcttctatgtcccgatacatggttcccgatgataaatgtaattgagagagtgccaaagttagaaaatatattcagacgatcgaactctttttccgacctgtataagattaacgattttatattatggaaacgcttgtaacacccggtggataaagaggggcatgaagtttcccatggcaagtttt Predict ORF larger than 30AA ================================================ Protein_Len: 33 Strand: + Start: 29 End: 127 ............................ M M V I I L A L F F F L S H D D V Q P R G K S P G R Y H E G R K A ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 32 Strand: + Start: 94 End: 189 ............................................................................................. M S R E V P R R P K G L R F E G R N A S R Y E A W G G N T I K P ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 227 End: 409 .................................................................................................................................................................................................................................. M K C G D L I F A G L R R F C S G A D K R L P D D A P K R D M S G Q N R Y A A R L P D G G L A E V V T G C L S A F Y K C ......................................................................................................................................................................................................................................................................................................................................... Protein_Len: 50 Strand: + Start: 433 End: 582 ................................................................................................................................................................................................................................................................................................................................................................................................................................................ M R H S D S C Y G A I V S S K D L R G F Q T E K A Q R T T W Y A V V R E G G F L C F Y V P I H G S R ............................................................................................................................................................ Protein_Len: 60 Strand: + Start: 489 End: 689 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ M S N G K S A K N D L V C S R P R R W F S L L L C P D T W F P M I N V I E R V P K L E N I F R R S N S F S D L Y K I N D ................................................. Protein_Len: 40 Strand: + Start: 619 End: 738 .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M Y S D D R T L F P T C I R L T I L Y Y G N A C N T R W I K R G M K F P M A S F Protein_Len: 60 Strand: - Start: 470 End: 733 ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... S R H G S V H N G I I F T I S L T G F N S F I N L R D F E K E S R Y L I L S K I N H F R K Y C G T S L S P C S T E W P M ..... Protein_Len: 60 Strand: - Start: 400 End: 624 ............................................................................................................................................................................................................................................................................................................................................................................................................... V A A V P S D D T T L I Q S S K L R F F R L S R S P I C D D A F T T K K A E I D R Y M T G S S L H L Q S L A L T L F Y M .................................................................................................................. Protein_Len: 38 Strand: - Start: 205 End: 318 ............................................................................................................................................................................................................ L P H L S K L I F H P S K I N A P R R R N Q E P A S L R R G S S A G F L S M .................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: - Start: 42 End: 449 ......................................... N L H P C V D E R H H E S F L Y S H A F G I R Q S V E R H L G Q L P Q L L S N T L R K C I Y I P S P Y F A K I R C E S M ................................................................................................................................................................................................................................................................................................. Protein_Len: 52 Strand: - Start: 2 End: 157 . R K K K T Q N L S N H H N N E R Q E K E Q A M V I H L W P S F R G P P V V F A S L S S I Q L A F H R G M ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 59 Strand: - Start: 1 End: 177 E N K K Q K T L H I I T I I R A N N K K K L W S S T C G R P F D G P L Y W S P R F A Q S K F P S I G G S V F R P S T M ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ttcgttttttttttgtttggttaagtgaattatggtgattattctcgcgttgttctttttcttgagccatgacgatgtgcaaccacggggaaaatctcccgggaggtaccacgaaggccgaaaggcttgagatttgaagggcgaaatgcctcccgatacgaagcgtggggaggtaatactataaagccctgaggggttatactataaagggtggaggcttttaagtataaagtgcggagacttgatatttgcaggtcttcggcggttttgttcaggtgcggacaaacgtcttcccgatgatgctccgaaaagagatatgagtgggcaaaaccgatacgctgcgagacttcccgatggaggccttgcagaggttgtaacaggctgtttgtcagccttttacaaatgtaaataggggaggggtaaaatgcctttattcggcattccgacagctgctacggggctatcgtcagtagtaaggatttgagaggatttcaaacggaaaaagcgcaaagaacgacttggtatgcagtcgtccgcgaaggtggttttctttgcttctatgtcccgatacatggttcccgatgataaatgtaattgagagagtgccaaagttagaaaatatattcagacgatcgaactctttttccgacctgtataagattaacgattttatattatggaaacgcttgtaacacccggtggataaagaggggcatgaagtttcccatggcaagtttt Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ ttcgttttttttttgtttggttaagtgaattatggtgattattctcgcgttgttctttttcttgagccatgacgatgtgcaaccacggggaaaatctcccgggaggtaccacgaaggccgaaaggcttgagatttgaagggcgaaatgcctcccgatacgaagcgtggggaggtaatactataaagccctgaggggttatactataaagggtggaggcttttaagtataaagtgcggagacttgatatttgcaggtcttcggcggttttgttcaggtgcggacaaacgtcttcccgatgatgctccgaaaagagatatgagtgggcaaaaccgatacgctgcgagacttcccgatggaggccttgcagaggttgtaacaggctgtttgtcagccttttacaaatgtaaataggggaggggtaaaatgcctttattcggcattccgacagctgctacggggctatcgtcagtagtaaggatttgagaggatttcaaacggaaaaagcgcaaagaacgacttggtatgcagtcgtccgcgaaggtggttttctttgcttctatgtcccgatacatggttcccgatgataaatgtaattgagagagtgccaaagttagaaaatatattcagacgatcgaactctttttccgacctgtataagattaacgattttatattatggaaacgcttgtaacacccggtggataaagaggggcatgaagtttcccatggcaagtttt Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 41 HP_score: -2.9 Tail_Score: -2.62958 Start: 234 End: 263 Full_Region: TTTTAAGTATAAAGT GCGGAGACTTG ATATTTG CAGGTCTTCGGC GGTTTTGTTCAGGTG .........................................................................................................................................................................................................................................GCGGAGACTTGATATTTGCAGGTCTTCGGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 71 HP_score: -7.1 Tail_Score: -4.13014 Start: 380 End: 394 Full_Region: GCAGAGGTTGTAACA GGCTG TTTGT CAGCC TTTTACAAATGTAAA ...........................................................................................................................................................................................................................................................................................................................................................................................GGCTGTTTGTCAGCC........................................................................................................................................................................................................................................................................................................................................................ TransTerm Strand: - Conf: 56 HP_score: -4.6 Tail_Score: -3.8046 Start: 512 End: 535 Full_Region: gaaaaccaccttcgc ggacgact gcatacca agtcgttc tttgcgctttttccg ...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ggacgactgcataccaagtcgttc........................................................................................................................................................................................................... TransTerm Strand: + Conf: 74 HP_score: -3.6 Tail_Score: -5.02357 Start: 534 End: 545 Full_Region: TTGGTATGCAGTCGT CCGC GAAG GTGG TTTTCTTTGCTTCTA .....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCGAAGGTGG................................................................................................................................................................................................. TransTerm Strand: + Conf: 47 HP_score: -2.1 Tail_Score: -3.59202 Start: 536 End: 555 Full_Region: GGTATGCAGTCGTCC GCGAAGG TGGTTT TCTTTGC TTCTATGTCCCGATA .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGAAGGTGGTTTTCTTTGC....................................................................................................................................................................................... Find igs database================================================ Query_seq: PG0222:PG0223|PG0222:PG0223:DNA-binding protein, histone-like family:exonuclease:<-<-:256471..257208 738 ttcgttttttttttgtttggttaagtgaattatggtgattattctcgcgttgttctttttcttgagccatgacgatgtgcaaccacggggaaaatctcccgggaggtaccacgaaggccgaaaggcttgagatttgaagggcgaaatgcctcccgatacgaagcgtggggaggtaatactataaagccctgaggggttatactataaagggtggaggcttttaagtataaagtgcggagacttgatatttgcaggtcttcggcggttttgttcaggtgcggacaaacgtcttcccgatgatgctccgaaaagagatatgagtgggcaaaaccgatacgctgcgagacttcccgatggaggccttgcagaggttgtaacaggctgtttgtcagccttttacaaatgtaaataggggaggggtaaaatgcctttattcggcattccgacagctgctacggggctatcgtcagtagtaaggatttgagaggatttcaaacggaaaaagcgcaaagaacgacttggtatgcagtcgtccgcgaaggtggttttctttgcttctatgtcccgatacatggttcccgatgataaatgtaattgagagagtgccaaagttagaaaatatattcagacgatcgaactctttttccgacctgtataagattaacgattttatattatggaaacgcttgtaacacccggtggataaagaggggcatgaagtttcccatggcaagtttt Intra-Species Hit: Count: 1 Min: 15 Max: 738 Len: 724 Subject: NC_002950_PG0222_PG0223|DNA-binding protein, histone-like family:exonuclease|NEGATIVE:NEGATIVE|[256471,257208]|738 HSP 1 e-value: 0.0 bit: 1435.0 Len: 724 Query Start:15 Query End:738 Subject Strand: POSITIVE Subject Start: 15 Subject End: 738 ..............gtttggttaagtgaattatggtgattattctcgcgttgttctttttcttgagccatgacgatgtgcaaccacggggaaaatctcccgggaggtaccacgaaggccgaaaggcttgagatttgaagggcgaaatgcctcccgatacgaagcgtggggaggtaatactataaagccctgaggggttatactataaagggtggaggcttttaagtataaagtgcggagacttgatatttgcaggtcttcggcggttttgttcaggtgcggacaaacgtcttcccgatgatgctccgaaaagagatatgagtgggcaaaaccgatacgctgcgagacttcccgatggaggccttgcagaggttgtaacaggctgtttgtcagccttttacaaatgtaaataggggaggggtaaaatgcctttattcggcattccgacagctgctacggggctatcgtcagtagtaaggatttgagaggatttcaaacggaaaaagcgcaaagaacgacttggtatgcagtcgtccgcgaaggtggttttctttgcttctatgtcccgatacatggttcccgatgataaatgtaattgagagagtgccaaagttagaaaatatattcagacgatcgaactctttttccgacctgtataagattaacgattttatattatggaaacgcttgtaacacccggtggataaagaggggcatgaagtttcccatggcaagtttt ..............gtttggttaagtgaattatggtgattattctcgcgttgttctttttcttgagccatgacgatgtgcaaccacggggaaaatctcccgggaggtaccacgaaggccgaaaggcttgagatttgaagggcgaaatgcctcccgatacgaagcgtggggaggtaatactataaagccctgaggggttatactataaagggtggaggcttttaagtataaagtgcggagacttgatatttgcaggtcttcggcggttttgttcaggtgcggacaaacgtcttcccgatgatgctccgaaaagagatatgagtgggcaaaaccgatacgctgcgagacttcccgatggaggccttgcagaggttgtaacaggctgtttgtcagccttttacaaatgtaaataggggaggggtaaaatgcctttattcggcattccgacagctgctacggggctatcgtcagtagtaaggatttgagaggatttcaaacggaaaaagcgcaaagaacgacttggtatgcagtcgtccgcgaaggtggttttctttgcttctatgtcccgatacatggttcccgatgataaatgtaattgagagagtgccaaagttagaaaatatattcagacgatcgaactctttttccgacctgtataagattaacgattttatattatggaaacgcttgtaacacccggtggataaagaggggcatgaagtttcccatggcaagtttt Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ GUUUGGUUAAGUGAAUUAUGGUGAUUAUUCUCGCGUUGUUCUUUUUCUUGAGCCAUGACGAUGUGCAACCACGGGGAAAAUCUCCCGGGAGGUACCACGAAGGCCGAAAGGCUUGAGAUUUGAAGGGCGAAAUGCCUCCCGAUACGAAGCGUGGGGAGGUAAUACUAUAAAGCCCUGAGGGGUUAUACUAUAAAGGGUGGAGGCUUUUAAGUAUAAAGUGCGGAGACUUGAUAUUUGCAGGUCUUCGGCGGUUUUGUUCAGGUGCGGACAAACGUCUUCCCGAUGAUGCUCCGAAAAGAGAUAUGAGUGGGCAAAACCGAUACGCUGCGAGACUUCCCGAUGGAGGCCUUGCAGAGGUUGUAACAGGCUGUUUGUCAGCCUUUUACAAAUGUAAAUAGGGGAGGGGUAAAAUGCCUUUAUUCGGCAUUCCGACAGCUGCUACGGGGCUAUCGUCAGUAGUAAGGAUUUGAGAGGAUUUCAAACGGAAAAAGCGCAAAGAACGACUUGGUAUGCAGUCGUCCGCGAAGGUGGUUUUCUUUGCUUCUAUGUCCCGAUACAUGGUUCCCGAUGAUAAAUGUAAUUGAGAGAGUGCCAAAGUUAGAAAAUAUAUUCAGACGAUCGAACUCUUUUUCCGACCUGUAUAAGAUUAACGAUUUUAUAUUAUGGAAACGCUUGUAACACCCGGUGGAUAAAGAGGGGCAUGAAGUUUCCCAUGGCAAGUUUU ((((((..((.(...((((((((............(((((((((.(((..((((........((((..((.(((((......)))))))..))))..((.....))...))))..)))...)))))))))..((((((((.((.......)).)))))))).)))))))).(((((......((((.((((...(((((.((((((((.((((((((((.((((((((((.......))))))))))..((((((((.(((((.((((...((.(((((((.....(((.(((...(......)...)))))).......(((.(((((((.(((((....))))).)))))))...((((((.((((((.....)))))).))))))..)))....))))))).))....(((.(((((((((..(((((...((((((((((.....)))).))))))..((((((....))))))....))))).....(((((((((((((........))))))((((....))))...)))))))..((((((......))))))...))))..))))).)))...((((((((......(((.(((......))).)))......))))))))))))))))).))))))))....))))))))))...)))).))))....))))).))))))))...)))))....).))..))).)))....... (-240.50) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AAAACUUGCCAUGGGAAACUUCAUGCCCCUCUUUAUCCACCGGGUGUUACAAGCGUUUCCAUAAUAUAAAAUCGUUAAUCUUAUACAGGUCGGAAAAAGAGUUCGAUCGUCUGAAUAUAUUUUCUAACUUUGGCACUCUCUCAAUUACAUUUAUCAUCGGGAACCAUGUAUCGGGACAUAGAAGCAAAGAAAACCACCUUCGCGGACGACUGCAUACCAAGUCGUUCUUUGCGCUUUUUCCGUUUGAAAUCCUCUCAAAUCCUUACUACUGACGAUAGCCCCGUAGCAGCUGUCGGAAUGCCGAAUAAAGGCAUUUUACCCCUCCCCUAUUUACAUUUGUAAAAGGCUGACAAACAGCCUGUUACAACCUCUGCAAGGCCUCCAUCGGGAAGUCUCGCAGCGUAUCGGUUUUGCCCACUCAUAUCUCUUUUCGGAGCAUCAUCGGGAAGACGUUUGUCCGCACCUGAACAAAACCGCCGAAGACCUGCAAAUAUCAAGUCUCCGCACUUUAUACUUAAAAGCCUCCACCCUUUAUAGUAUAACCCCUCAGGGCUUUAUAGUAUUACCUCCCCACGCUUCGUAUCGGGAGGCAUUUCGCCCUUCAAAUCUCAAGCCUUUCGGCCUUCGUGGUACCUCCCGGGAGAUUUUCCCCGUGGUUGCACAUCGUCAUGGCUCAAGAAAAAGAACAACGCGAGAAUAAUCACCAUAAUUCACUUAACCAAAC ..........((((((..((((.((((.((((((.((((((..((((....((((.................))))......)))).))).))).)))))).......((..(((......)))..))...))))...((((...(((((...((.....))...)))))..))))....))))..............(((((((((((((........)))))))).(((..(((((((.((((((.......)))))).....(((.(((((((.........((((.....((((((((.......))))))))...................((((((.((((((.....)))))).))))))...))))...((..((((.((((((((((..(((((...(((..(((.....((.((.((((..(((.......)))..)))).)).))...((.(((((........((.((.(((.((.......)).))))).))...(((((((..((((........))))..)))))))....)))))))......)))..))).....)))))......(((((((.((..((...............(((....)))...))..)).))))))).)))).)))))).))))..))..)))))))))).....)))))))..))).))))).....)).))))................. (-181.10) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 1081 100 51 205 156 NC_002950:PG0222|5end_DNA-binding_protein,_histone-like_family_256380..256610_NEGATIVE 420 439 398 184 142 NC_002950:PG0770|5end_hypothetical_protein_824575..824805_NEGATIVE 409 360 311 132 82 NC_002950:PG2220|5end_hypothetical_protein_2334935..2335165_POSITIVE 406 267 222 69 31 NC_002950:PG0485|5end_preprotein_translocase,_YajC_subunit_525324..525554_NEGATIVE 402 358 311 201 142 NC_002950:PG1370|5end_lysyl-tRNA_synthetase_1452229..1452459_NEGATIVE 397 358 311 61 9 NC_002950:PG1091|5end_DHH_subfamily_1_protein_1157017..1157247_POSITIVE 395 346 307 230 186 NC_002950:PG1324|5end_Holliday_junction_resolvase_1403431..1403661_NEGATIVE 394 289 243 228 183 NC_002950:PG1577|5end_nicotinate-nucleotide_pyrophosphorylase_1654619..1654849_POSITIVE 394 554 515 77 44 NC_002950:PG1273|5end_hypothetical_protein_1351837..1352067_NEGATIVE 394 148 101 162 121 NC_002950:PG1163|5end_cobyrinic_acid_a,c-diamide_synthase_1243381..1243611_NEGATIVE 390 475 431 57 13 NC_002950:PG0092|5end_transporter,_putative_108598..108828_NEGATIVE 389 447 401 106 48 NC_002950:PG1006|5end_hypothetical_protein_1066478..1066708_NEGATIVE 389 289 244 203 150 NC_002950:PG0657|5end_Maf-like_protein_707782..708012_NEGATIVE 384 280 240 175 138 NC_002950:PG1237|5end_transcriptional_regulator,_LuxR_family_1312229..1312459_POSITIVE 380 458 413 57 12 NC_002950:PG1270|5end_hypothetical_protein_1350207..1350437_NEGATIVE 379 357 316 57 2 NC_002950:PG0113|5end_hypothetical_protein_135925..136155_POSITIVE 377 550 501 94 43 NC_002950:PG1925|5end_ribosomal_protein_S14_2018675..2018905_NEGATIVE 377 280 237 205 161 NC_002950:PG1485|5end_conjugative_transposon_protein_TraC_1560370..1560600_NEGATIVE 376 106 61 100 51 NC_002950:PG2145|5end_polysaccharide_deacetylase_2253253..2253483_POSITIVE 376 454 413 199 148 NC_002950:PG1381|5end_ABC_transporter,_permease_protein_1460622..1460852_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 409 445 403 83 35 NC_002950:PG0545|3end_hypothetical_protein_600228..600378_POSITIVE 402 358 311 78 19 NC_002950:PG1371|3end_phosphorylase_family_protein_1452352..1452502_NEGATIVE 389 447 401 66 8 NC_002950:PG1007|3end_transcriptional_regulator,_GntR_family_1066518..1066668_NEGATIVE 389 447 402 150 102 NC_002950:PG0800|3end_hypothetical_protein_854719..854869_NEGATIVE 380 458 413 50 5 NC_002950:PG1271|3end_acetylornithine_aminotransferase,_putative_1350214..1350364_NEGATIVE 377 550 501 92 41 NC_002950:PG1926|3end_50S_ribosomal_protein_L5_2018677..2018827_NEGATIVE 376 106 61 57 8 NC_002950:PG2144|3end_hypothetical_protein_2253290..2253440_POSITIVE 375 376 338 78 38 NC_002950:PG1519|3end_hypothetical_protein_1597425..1597575_POSITIVE 373 264 221 89 41 NC_002950:PG0021|3end_TIM-barrel_protein,_putative,_NifR3_family_24122..24272_NEGATIVE 369 130 82 52 6 NC_002950:PG0146|3end_hypothetical_protein_168408..168558_NEGATIVE 368 459 411 149 93 NC_002950:PG0377|3end_30S_ribosomal_protein_S2_407845..407995_POSITIVE 366 110 65 88 31 NC_002950:PG0656|3end_50S_ribosomal_protein_L34_706945..707095_NEGATIVE 365 128 82 78 16 NC_002950:PG1118|3end_clpB_protein_1192083..1192233_NEGATIVE 365 269 221 108 52 NC_002950:PG1095|3end_RNA_methyltransferase,_TrmA_family_1161702..1161852_POSITIVE 365 118 71 97 35 NC_002950:PG0607|3end_hypothetical_protein_662994..663144_POSITIVE 363 290 247 75 25 NC_002950:PG0950|3end_glycine_cleavage_system_protein_H_1010321..1010471_POSITIVE 363 531 491 139 97 NC_002950:PG0441|3end_hypothetical_protein_481447..481597_POSITIVE 363 446 401 70 30 NC_002950:PG0173|3end_transcriptional_regulator,_putative_194388..194538_NEGATIVE 355 130 82 115 57 NC_002950:PG2046|3end_hypothetical_protein_2145793..2145943_POSITIVE 355 553 511 135 74 NC_002950:PG0669|3end_heme-binding_protein_FetB_720714..720864_POSITIVE