Origin IGS: atactcgcccatatctattcggacaaaccgtctcaaaaacggatgcgggacagaataaggtttttaatacctcatctgtcccgcatgcttagaaaaggatatatcagctctttatataaaggaaaggattgcctatcctagtattttcttgtccacttatgagaacaacttttgcattgaaattcaaactcagtgtcctggaaaaaattgtcagcaaagttgtcgatattttcatttgctttttctccaatcaaagattctactgctgcacctgcaattcctcccgtgattgtcccaagacccggaattacacttcctatagcagcccctatagccgctccttttccttttttcaatgtattgcgcgctagcttactgccaaagcttcttttgggctttccgacagttgctactccacatacggggcatctacatgctttactactcatttcttgtcgctgttttatttattcttgtattttttcaatctctctttacgctctttttttttttttctttataaatctgataagctcttgctgctatcatagcggcaactgttgataaagtaaatgacatagttctttttgttgttacttattactactaatagcttcaaattctctcatttgtgtaattgttttgtttgtcttgttacctctttttttattattgaaatattctgtttataattcattcattatc .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 gataatgaatgaattataaacagaatatttcaataataaaaaaagaggtaacaagacaaacaaaacaattacacaaatgagagaatttgaagctattagtagtaataagtaacaacaaaaagaactatgtcatttactttatcaacagttgccgctatgatagcagcaagagcttatcagatttataaagaaaaaaaaaaaaagagcgtaaagagagattgaaaaaatacaagaataaataaaacagcgacaagaaatgagtagtaaagcatgtagatgccccgtatgtggagtagcaactgtcggaaagcccaaaagaagctttggcagtaagctagcgcgcaatacattgaaaaaaggaaaaggagcggctataggggctgctataggaagtgtaattccgggtcttgggacaatcacgggaggaattgcaggtgcagcagtagaatctttgattggagaaaaagcaaatgaaaatatcgacaactttgctgacaattttttccaggacactgagtttgaatttcaatgcaaaagttgttctcataagtggacaagaaaatactaggataggcaatcctttcctttatataaagagctgatatatccttttctaagcatgcgggacagatgaggtattaaaaaccttattctgtcccgcatccgtttttgagacggtttgtccgaatagatatgggcgagtat Mask Tandem Repeat Region ================================================ atactcgcccatatctattcggacaaaccgtctcaaaaacggatgcgggacagaataaggtttttaatacctcatctgtcccgcatgcttagaaaaggatatatcagctctttatataaaggaaaggattgcctatcctagtattttcttgtccacttatgagaacaacttttgcattgaaattcaaactcagtgtcctggaaaaaattgtcagcaaagttgtcgatattttcatttgctttttctccaatcaaagattctactgctgcacctgcaattcctcccgtgattgtcccaagacccggaattacacttcctatagcagcccctatagccgctccttttccttttttcaatgtattgcgcgctagcttactgccaaagcttcttttgggctttccgacagttgctactccacatacggggcatctacatgctttactactcatttcttgtcgctgttttatttattcttgtattttttcaatctctctttacgctctttttttttttttctttataaatctgataagctcttgctgctatcatagcggcaactgttgataaagtaaatgacatagttctttttgttgttacttattactactaatagcttcaaattctctcatttgtgtaattgttttgtttgtcttgttacctctttttttattattgaaatattctgtttataattcattcattatc Find is-nt database================================================ Query_seq: PG0218:PG0219|PG0218:PG0219:hypothetical protein:hypothetical protein:-><-:254395..255099 705 atactcgcccatatctattcggacaaaccgtctcaaaaacggatgcgggacagaataaggtttttaatacctcatctgtcccgcatgcttagaaaaggatatatcagctctttatataaaggaaaggattgcctatcctagtattttcttgtccacttatgagaacaacttttgcattgaaattcaaactcagtgtcctggaaaaaattgtcagcaaagttgtcgatattttcatttgctttttctccaatcaaagattctactgctgcacctgcaattcctcccgtgattgtcccaagacccggaattacacttcctatagcagcccctatagccgctccttttccttttttcaatgtattgcgcgctagcttactgccaaagcttcttttgggctttccgacagttgctactccacatacggggcatctacatgctttactactcatttcttgtcgctgttttatttattcttgtattttttcaatctctctttacgctctttttttttttttctttataaatctgataagctcttgctgctatcatagcggcaactgttgataaagtaaatgacatagttctttttgttgttacttattactactaatagcttcaaattctctcatttgtgtaattgttttgtttgtcttgttacctctttttttattattgaaatattctgtttataattcattcattatc Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PG0218:PG0219|PG0218:PG0219:hypothetical protein:hypothetical protein:-><-:254395..255099 705 atactcgcccatatctattcggacaaaccgtctcaaaaacggatgcgggacagaataaggtttttaatacctcatctgtcccgcatgcttagaaaaggatatatcagctctttatataaaggaaaggattgcctatcctagtattttcttgtccacttatgagaacaacttttgcattgaaattcaaactcagtgtcctggaaaaaattgtcagcaaagttgtcgatattttcatttgctttttctccaatcaaagattctactgctgcacctgcaattcctcccgtgattgtcccaagacccggaattacacttcctatagcagcccctatagccgctccttttccttttttcaatgtattgcgcgctagcttactgccaaagcttcttttgggctttccgacagttgctactccacatacggggcatctacatgctttactactcatttcttgtcgctgttttatttattcttgtattttttcaatctctctttacgctctttttttttttttctttataaatctgataagctcttgctgctatcatagcggcaactgttgataaagtaaatgacatagttctttttgttgttacttattactactaatagcttcaaattctctcatttgtgtaattgttttgtttgtcttgttacctctttttttattattgaaatattctgtttataattcattcattatc Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PG0218:PG0219|PG0218:PG0219:hypothetical protein:hypothetical protein:-><-:254395..255099 705 atactcgcccatatctattcggacaaaccgtctcaaaaacggatgcgggacagaataaggtttttaatacctcatctgtcccgcatgcttagaaaaggatatatcagctctttatataaaggaaaggattgcctatcctagtattttcttgtccacttatgagaacaacttttgcattgaaattcaaactcagtgtcctggaaaaaattgtcagcaaagttgtcgatattttcatttgctttttctccaatcaaagattctactgctgcacctgcaattcctcccgtgattgtcccaagacccggaattacacttcctatagcagcccctatagccgctccttttccttttttcaatgtattgcgcgctagcttactgccaaagcttcttttgggctttccgacagttgctactccacatacggggcatctacatgctttactactcatttcttgtcgctgttttatttattcttgtattttttcaatctctctttacgctctttttttttttttctttataaatctgataagctcttgctgctatcatagcggcaactgttgataaagtaaatgacatagttctttttgttgttacttattactactaatagcttcaaattctctcatttgtgtaattgttttgtttgtcttgttacctctttttttattattgaaatattctgtttataattcattcattatc Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 atactcgcccatatctattcggacaaaccgtctcaaaaacggatgcgggacagaataaggtttttaatacctcatctgtcccgcatgcttagaaaaggatatatcagctctttatataaaggaaaggattgcctatcctagtattttcttgtccacttatgagaacaacttttgcattgaaattcaaactcagtgtcctggaaaaaattgtcagcaaagttgtcgatattttcatttgctttttctccaatcaaagattctactgctgcacctgcaattcctcccgtgattgtcccaagacccggaattacacttcctatagcagcccctatagccgctccttttccttttttcaatgtattgcgcgctagcttactgccaaagcttcttttgggctttccgacagttgctactccacatacggggcatctacatgctttactactcatttcttgtcgctgttttatttattcttgtattttttcaatctctctttacgctctttttttttttttctttataaatctgataagctcttgctgctatcatagcggcaactgttgataaagtaaatgacatagttctttttgttgttacttattactactaatagcttcaaattctctcatttgtgtaattgttttgtttgtcttgttacctctttttttattattgaaatattctgtttataattcattcattatc Predict ORF larger than 30AA ================================================ Protein_Len: 46 Strand: + Start: 1 End: 138 M L A H I Y S D K P S Q K R M R D R I R F L I P H L S R M L R K G Y I S S L Y K G K D C L S ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 74 End: 286 ......................................................................... M C P A C L E K D I S A L Y I K E R I A Y P S I F L S T Y E N N F C I E I Q T Q C P G K N C Q Q S C R Y F H L L F L Q S ................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 129 End: 368 ................................................................................................................................ M P I L V F S C P L M R T T F A L K F K L S V L E K I V S K V V D I F I C F F S N Q R F Y C C T C N S S R D C P K T R N ................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 55 Strand: + Start: 356 End: 520 ................................................................................................................................................................................................................................................................................................................................................................... M Y C A L A Y C Q S F F W A F R Q L L L H I R G I Y M L Y Y S F L V A V L F I L V F F Q S L F T L F F F F S L ......................................................................................................................................................................................... Protein_Len: 32 Strand: + Start: 453 End: 548 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M S L F Y L F L Y F F N L S L R S F F F F L Y K S D K L L L L S ............................................................................................................................................................. Protein_Len: 60 Strand: + Start: 193 End: 561 ................................................................................................................................................................................................ M S W K K L S A K L S I F S F A F S P I K D S T A A P A I P P V I V P R P G I T L P I A A P I A A P F P F F N V L R A S ................................................................................................................................................ Protein_Len: 34 Strand: + Start: 588 End: 689 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M L L L I T T N S F K F S H L C N C F V C L V T S F F I I E I F C L ................ Protein_Len: 32 Strand: + Start: 610 End: 705 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M A S N S L I C V I V L F V L L P L F L L L K Y S V Y N S F I I Protein_Len: 33 Strand: - Start: 521 End: 619 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ L D S L S K S S D Y R C S N I F Y I V Y N K K N N S I V V L L K M ...................................................................................... Protein_Len: 31 Strand: - Start: 487 End: 579 ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... D R K V S K K K K E K Y I Q Y A R A A I M A A V T S L T F S M .............................................................................................................................. Protein_Len: 41 Strand: - Start: 235 End: 357 .......................................................................................................................................................................................................................................... K S K R W D F I R S S C R C N R G H N D W S G S N C K R Y C G R Y G S R K R K E M ............................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 60 Strand: - Start: 141 End: 467 ............................................................................................................................................ I T G L G P I V S G I A A G I A A G K G K K L T N R A L K S G F S R K P K G V T A V G C V P C R C A K S S M E Q R Q K M .............................................................................................................................................................................................................................................. Protein_Len: 48 Strand: - Start: 107 End: 250 .......................................................................................................... S K I Y L F P N G I R T N E Q G S I L V V K A N F N L S L T R S F I T L L T T S I K M Q K K E M ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................... atactcgcccatatctattcggacaaaccgtctcaaaaacggatgcgggacagaataaggtttttaatacctcatctgtcccgcatgcttagaaaaggatatatcagctctttatataaaggaaaggattgcctatcctagtattttcttgtccacttatgagaacaacttttgcattgaaattcaaactcagtgtcctggaaaaaattgtcagcaaagttgtcgatattttcatttgctttttctccaatcaaagattctactgctgcacctgcaattcctcccgtgattgtcccaagacccggaattacacttcctatagcagcccctatagccgctccttttccttttttcaatgtattgcgcgctagcttactgccaaagcttcttttgggctttccgacagttgctactccacatacggggcatctacatgctttactactcatttcttgtcgctgttttatttattcttgtattttttcaatctctctttacgctctttttttttttttctttataaatctgataagctcttgctgctatcatagcggcaactgttgataaagtaaatgacatagttctttttgttgttacttattactactaatagcttcaaattctctcatttgtgtaattgttttgtttgtcttgttacctctttttttattattgaaatattctgtttataattcattcattatc Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: - Score: 85 Start: 545 End: 574 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTACTTTATCAACAGTTGCCGCTATGAT................................................................................................................................... PromScan Matrix: RpoD-17 Strand: + Score: 83 Start: 664 End: 693 .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTATTATTGAAATATTCTGTTTATAAT............ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ atactcgcccatatctattcggacaaaccgtctcaaaaacggatgcgggacagaataaggtttttaatacctcatctgtcccgcatgcttagaaaaggatatatcagctctttatataaaggaaaggattgcctatcctagtattttcttgtccacttatgagaacaacttttgcattgaaattcaaactcagtgtcctggaaaaaattgtcagcaaagttgtcgatattttcatttgctttttctccaatcaaagattctactgctgcacctgcaattcctcccgtgattgtcccaagacccggaattacacttcctatagcagcccctatagccgctccttttccttttttcaatgtattgcgcgctagcttactgccaaagcttcttttgggctttccgacagttgctactccacatacggggcatctacatgctttactactcatttcttgtcgctgttttatttattcttgtattttttcaatctctctttacgctctttttttttttttctttataaatctgataagctcttgctgctatcatagcggcaactgttgataaagtaaatgacatagttctttttgttgttacttattactactaatagcttcaaattctctcatttgtgtaattgttttgtttgtcttgttacctctttttttattattgaaatattctgtttataattcattcattatc Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 100 HP_score: -12.3 Tail_Score: -4.58685 Start: 40 End: 89 Full_Region: atatatccttttcta agcatgcgggacagatgaggtat taa aaaccttattctgtcccgcatccg tttttgagacggttt .......................................agcatgcgggacagatgaggtattaaaaaccttattctgtcccgcatccg........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ TransTerm Strand: - Conf: 100 HP_score: -15.8 Tail_Score: -3.34488 Start: 41 End: 88 Full_Region: tatatccttttctaa gcatgcgggacagatgaggtat taa aaaccttattctgtcccgcatcc gtttttgagacggtt ........................................gcatgcgggacagatgaggtattaaaaaccttattctgtcccgcatcc......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 93 HP_score: -13.9 Tail_Score: -2.71011 Start: 44 End: 85 Full_Region: CGTCTCAAAAACGGA TGCGGGACAGAATAAGGTTT TTA ATACCTCATCTGTCCCGCA TGCTTAGAAAAGGAT ...........................................TGCGGGACAGAATAAGGTTTTTAATACCTCATCTGTCCCGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ TransTerm Strand: - Conf: 100 HP_score: -16.1 Tail_Score: -2.83903 Start: 44 End: 85 Full_Region: atccttttctaagca tgcgggacagatgaggtat taa aaaccttattctgtcccgca tccgtttttgagacg ...........................................tgcgggacagatgaggtattaaaaaccttattctgtcccgca............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Find igs database================================================ Query_seq: PG0218:PG0219|PG0218:PG0219:hypothetical protein:hypothetical protein:-><-:254395..255099 705 atactcgcccatatctattcggacaaaccgtctcaaaaacggatgcgggacagaataaggtttttaatacctcatctgtcccgcatgcttagaaaaggatatatcagctctttatataaaggaaaggattgcctatcctagtattttcttgtccacttatgagaacaacttttgcattgaaattcaaactcagtgtcctggaaaaaattgtcagcaaagttgtcgatattttcatttgctttttctccaatcaaagattctactgctgcacctgcaattcctcccgtgattgtcccaagacccggaattacacttcctatagcagcccctatagccgctccttttccttttttcaatgtattgcgcgctagcttactgccaaagcttcttttgggctttccgacagttgctactccacatacggggcatctacatgctttactactcatttcttgtcgctgttttatttattcttgtattttttcaatctctctttacgctctttttttttttttctttataaatctgataagctcttgctgctatcatagcggcaactgttgataaagtaaatgacatagttctttttgttgttacttattactactaatagcttcaaattctctcatttgtgtaattgttttgtttgtcttgttacctctttttttattattgaaatattctgtttataattcattcattatc Intra-Species Hit: Count: 1 Min: 1 Max: 705 Len: 705 Subject: NC_002950_PG0218_PG0219|hypothetical protein:hypothetical protein|POSITIVE:NEGATIVE|[254395,255099]|705 HSP 1 e-value: 0.0 bit: 886.0 Len: 447 Query Start:1 Query End:447 Subject Strand: POSITIVE Subject Start: 1 Subject End: 447 atactcgcccatatctattcggacaaaccgtctcaaaaacggatgcgggacagaataaggtttttaatacctcatctgtcccgcatgcttagaaaaggatatatcagctctttatataaaggaaaggattgcctatcctagtattttcttgtccacttatgagaacaacttttgcattgaaattcaaactcagtgtcctggaaaaaattgtcagcaaagttgtcgatattttcatttgctttttctccaatcaaagattctactgctgcacctgcaattcctcccgtgattgtcccaagacccggaattacacttcctatagcagcccctatagccgctccttttccttttttcaatgtattgcgcgctagcttactgccaaagcttcttttgggctttccgacagttgctactccacatacggggcatctacatgctttactactc.................................................................................................................................................................................................................................................................. atactcgcccatatctattcggacaaaccgtctcaaaaacggatgcgggacagaataaggtttttaatacctcatctgtcccgcatgcttagaaaaggatatatcagctctttatataaaggaaaggattgcctatcctagtattttcttgtccacttatgagaacaacttttgcattgaaattcaaactcagtgtcctggaaaaaattgtcagcaaagttgtcgatattttcatttgctttttctccaatcaaagattctactgctgcacctgcaattcctcccgtgattgtcccaagacccggaattacacttcctatagcagcccctatagccgctccttttccttttttcaatgtattgcgcgctagcttactgccaaagcttcttttgggctttccgacagttgctactccacatacggggcatctacatgctttactactc.................................................................................................................................................................................................................................................................. HSP 2 e-value: 1.0E-90 bit: 335.0 Len: 190 Query Start:516 Query End:705 Subject Strand: POSITIVE Subject Start: 516 Subject End: 705 ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ctttataaatctgataagctcttgctgctatcatagcggcaactgttgataaagtaaatgacatagttctttttgttgttacttattactactaatagcttcaaattctctcatttgtgtaattgttttgtttgtcttgttacctcnnnnnnnattattgaaatattctgtttataattcattcattatc ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ctttataaatctgataagctcttgctgctatcatagcggcaactgttgataaagtaaatgacatagttctttttgttgttacttattactactaatagcttcaaattctctcatttgtgtaattgttttgtttgtcttgttacctctttttttattattgaaatattctgtttataattcattcattatc Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AUACUCGCCCAUAUCUAUUCGGACAAACCGUCUCAAAAACGGAUGCGGGACAGAAUAAGGUUUUUAAUACCUCAUCUGUCCCGCAUGCUUAGAAAAGGAUAUAUCAGCUCUUUAUAUAAAGGAAAGGAUUGCCUAUCCUAGUAUUUUCUUGUCCACUUAUGAGAACAACUUUUGCAUUGAAAUUCAAACUCAGUGUCCUGGAAAAAAUUGUCAGCAAAGUUGUCGAUAUUUUCAUUUGCUUUUUCUCCAAUCAAAGAUUCUACUGCUGCACCUGCAAUUCCUCCCGUGAUUGUCCCAAGACCCGGAAUUACACUUCCUAUAGCAGCCCCUAUAGCCGCUCCUUUUCCUUUUUUCAAUGUAUUGCGCGCUAGCUUACUGCCAAAGCUUCUUUUGGGCUUUCCGACAGUUGCUACUCCACAUACGGGGCAUCUACAUGCUUUACUACUCAUUUCUUGUCGCUGUUUUAUUUAUUCUUGUAUUUUUUCAAUCUCUCUUUACGCUCUUUUUUUUUUUUUCUUUAUAAAUCUGAUAAGCUCUUGCUGCUAUCAUAGCGGCAACUGUUGAUAAAGUAAAUGACAUAGUUCUUUUUGUUGUUACUUAUUACUACUAAUAGCUUCAAAUUCUCUCAUUUGUGUAAUUGUUUUGUUUGUCUUGUUACCUCUUUUUUUAUUAUUGAAAUAUUCUGUUUAUAAUUCAUUCAUUAUC ....................((((.....))))...(((((((.((((((((((...((((.......))))..)))))))))).....((((((((((..((((((.......((((((((((((((((((......(((((...((((..........(((((........(((((((.........)))))))....(((((.((((.((((...)))).)))).))))).........)))))......))))...)))))........))))))).....(.(((((...(((((...((((......)))).(((((.(((((..(((((((........................))).))))((..(((((.(((((((.....)))))))..).)))).))............)))))...................((.....))..))))).........)))))........))))).)....................)))))))))))...)))))).((..(((((((((...)))))))))..))((((((..((((..(.(((((((.....(((((((...........)))))))..(((((......))))).).)))))).)..))))..))))))..))))))))))............)))))))................. (-144.79) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ GAUAAUGAAUGAAUUAUAAACAGAAUAUUUCAAUAAUAAAAAAAGAGGUAACAAGACAAACAAAACAAUUACACAAAUGAGAGAAUUUGAAGCUAUUAGUAGUAAUAAGUAACAACAAAAAGAACUAUGUCAUUUACUUUAUCAACAGUUGCCGCUAUGAUAGCAGCAAGAGCUUAUCAGAUUUAUAAAGAAAAAAAAAAAAAGAGCGUAAAGAGAGAUUGAAAAAAUACAAGAAUAAAUAAAACAGCGACAAGAAAUGAGUAGUAAAGCAUGUAGAUGCCCCGUAUGUGGAGUAGCAACUGUCGGAAAGCCCAAAAGAAGCUUUGGCAGUAAGCUAGCGCGCAAUACAUUGAAAAAAGGAAAAGGAGCGGCUAUAGGGGCUGCUAUAGGAAGUGUAAUUCCGGGUCUUGGGACAAUCACGGGAGGAAUUGCAGGUGCAGCAGUAGAAUCUUUGAUUGGAGAAAAAGCAAAUGAAAAUAUCGACAACUUUGCUGACAAUUUUUUCCAGGACACUGAGUUUGAAUUUCAAUGCAAAAGUUGUUCUCAUAAGUGGACAAGAAAAUACUAGGAUAGGCAAUCCUUUCCUUUAUAUAAAGAGCUGAUAUAUCCUUUUCUAAGCAUGCGGGACAGAUGAGGUAUUAAAAACCUUAUUCUGUCCCGCAUCCGUUUUUGAGACGGUUUGUCCGAAUAGAUAUGGGCGAGUAU .(((((......)))))..........((((((.............((((..................((((.(((((......)))))..((((....)))).....))))............((((((..((((((...(((....(((.((((.(((((..(((....)))))))).......................................(((........))).............)))).)))....)))..))))))..)))))).))))..((((((((..((((.(((((((..((((.........)))))))))))..)))).).))).)))).))))))...(((((((((((((((.....)))))).....(((((..(((((.(((((((((((((((((.((((...(((((.......)))))....)))))))))).......(((((((((.....))).....)))))).........))))))))).)))))))...)))))...((.....((((((........))))))....(((..((((.(((....))).)))).))).......)).......)))))))))....((((((((((((((((((.......)))))).))))))))))))(((((.....))))).(((((((........))))))).... (-161.10) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 394 406 363 182 133 NC_002950:PG1485|5end_conjugative_transposon_protein_TraC_1560370..1560600_NEGATIVE 389 298 255 70 12 NC_002950:PG1416|5end_enoyl-(acyl-carrier-protein)_reductase_II_1500057..1500287_POSITIVE 381 419 371 65 10 NC_002950:PG1651|5end_TPR_domain_protein_1730326..1730556_POSITIVE 377 396 351 57 6 NC_002950:PG0855|5end_hypothetical_protein_916055..916285_NEGATIVE 374 418 376 85 46 NC_002950:PG0362|5end_hypothetical_protein_395301..395531_POSITIVE 369 424 382 206 146 NC_002950:PG1381|5end_ABC_transporter,_permease_protein_1460622..1460852_POSITIVE 366 400 351 89 29 NC_002950:PG2147|5end_xanthine_phosphoribosyltransferase_2255400..2255630_NEGATIVE 362 380 331 164 110 NC_002950:PG0147|5end_hypothetical_protein_169667..169897_NEGATIVE 360 325 281 231 174 NC_002950:PG2027|5end_hypothetical_protein_2125494..2125724_POSITIVE 360 427 385 176 126 NC_002950:PG1863|5end_hypothetical_protein_1960516..1960746_NEGATIVE 357 113 71 197 142 NC_002950:PG1495|5end_DNA_topoisomerase_III_1571243..1571473_POSITIVE 350 410 361 213 169 NC_002950:PG0098|5end_hypothetical_protein_115843..116073_NEGATIVE 347 368 322 219 168 NC_002950:PG0704|5end_phosphoglycerate_mutase_family_protein_758928..759158_POSITIVE 346 418 378 64 3 NC_002950:PG0678|5end_pyrazinamidase/nicotinamidase,_putative_728879..729109_POSITIVE 346 328 281 137 86 NC_002950:PG0133|5end_hypothetical_protein_155764..155994_NEGATIVE 342 410 363 69 6 NC_002950:PG0623|5end_triosephosphate_isomerase_677261..677491_POSITIVE 336 327 281 216 169 NC_002950:PG1947|5end_TPR_domain_protein_2032932..2033162_POSITIVE 335 330 282 192 141 NC_002950:PG2173|5end_outer_membrane_lipoprotein_Omp28_2280813..2281043_NEGATIVE 335 350 302 98 38 NC_002950:PG1143|5end_sugar_dehydrogenase,_UDP-glucose/GDP-mannose_dehydrogenase_family_1227198..1227428_NEGATIVE 334 410 361 188 146 NC_002950:PG2043|5end_conserved_hypothetical_protein_TIGR00486_2142218..2142448_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 483 86 43 48 5 NC_002950:PG0218|3end_hypothetical_protein_254334..254484_POSITIVE 390 409 361 136 69 NC_002950:PG0344|3end_purple_acid_phosphatase_378543..378693_NEGATIVE 357 113 71 108 53 NC_002950:PG1494|3end_hypothetical_protein_1571234..1571384_POSITIVE 356 394 351 149 101 NC_002950:PG0855|3end_hypothetical_protein_915960..916110_NEGATIVE 346 328 281 118 67 NC_002950:PG0134|3end_magnesium_transporter_155783..155933_NEGATIVE 334 350 313 77 28 NC_002950:PG0507|3end_hypothetical_protein_548190..548340_POSITIVE 332 439 391 122 73 NC_002950:PG0132|3end_hypothetical_protein_153054..153204_POSITIVE 321 437 396 116 58 NC_002950:PG0267|3end_arginyl-tRNA_synthetase_300973..301123_POSITIVE 320 437 393 64 11 NC_002950:PG0632|3end_biopolymer_transport_protein_ExbD,_putative_685376..685526_POSITIVE 318 368 326 136 88 NC_002950:PG2186|3end_transcriptional_regulator,_putative_2293284..2293434_NEGATIVE 318 410 366 146 100 NC_002950:PG0711|3end_hypothetical_protein_766281..766431_POSITIVE 317 89 41 85 35 NC_002950:PG1675|3end_hypothetical_protein_1760360..1760510_POSITIVE 315 305 263 46 8 NC_002950:PG1523|3end_naphthoate_synthase_1600170..1600320_NEGATIVE 315 410 363 73 5 NC_002950:PG1171|3end_oxidoreductase,_putative_1251175..1251325_POSITIVE 312 419 371 147 108 NC_002950:PG0020|3end_transcriptional_regulator,_MarR_family_24166..24316_POSITIVE 311 408 365 145 98 NC_002950:PG2117|3end_30S_ribosomal_protein_S16_2225235..2225385_NEGATIVE 310 305 261 97 41 NC_002950:PG1392|3end_rod_shape-determining_protein_RodA,_putative_1472959..1473109_NEGATIVE 310 410 364 119 73 NC_002950:PG0249|3end_oxaloacetate_decarboxylase,_putative_281939..282089_NEGATIVE 308 437 392 64 14 NC_002950:PG0071|3end_UDP-3-O-acyl-GlcNAc_deacetylase/beta-hydroxyacyl-[acyl_carrier_protein]_dehydratase_FabZ_84731..84881_NEGATIVE 307 415 376 148 109 NC_002950:PG2073|3end_hypothetical_protein_2174219..2174369_NEGATIVE