Origin IGS: tttactgaaaacaaatgaaggtattggaagaatggagatggcgggcgaatagtgtttgcctgcgctccccacaaaagtaaagaaataagacatgcagccataacgccccgacatcgatccgatcgcgccaatgtctatagcctgctgtcatggaaacacgaaccaaaaatgcgccgattgcggcgcgtgttttctgaaaaaatggcgcgagaattgtttcgttgtggcgtgagaatttttcatttcccgaaccagaagcaaaaaatttacgcgccacgttttgaggaacgacgaacacaaaaattccggcgcgtaaaccgatccctgtataagccgatgtgtcaatgctttttggtttgagttcggtatcggaagagagtaatagtagtatcggatgaggtaacgcttcggatcgtcgatggggtgctgaaaggatgagattcggggaagggcaaaaaaattgctctatcggatgacagattccggtttgttctgcgtctcgtaaataaagacctttgcaacggaggtcctgtcccgattacttaagc .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 gcttaagtaatcgggacaggacctccgttgcaaaggtctttatttacgagacgcagaacaaaccggaatctgtcatccgatagagcaatttttttgcccttccccgaatctcatcctttcagcaccccatcgacgatccgaagcgttacctcatccgatactactattactctcttccgataccgaactcaaaccaaaaagcattgacacatcggcttatacagggatcggtttacgcgccggaatttttgtgttcgtcgttcctcaaaacgtggcgcgtaaattttttgcttctggttcgggaaatgaaaaattctcacgccacaacgaaacaattctcgcgccattttttcagaaaacacgcgccgcaatcggcgcatttttggttcgtgtttccatgacagcaggctatagacattggcgcgatcggatcgatgtcggggcgttatggctgcatgtcttatttctttacttttgtggggagcgcaggcaaacactattcgcccgccatctccattcttccaataccttcatttgttttcagtaaa Mask Tandem Repeat Region ================================================ tttactgaaaacaaatgaaggtattggaagaatggagatggcgggcgaatagtgtttgcctgcgctccccacaaaagtaaagaaataagacatgcagccataacgccccgacatcgatccgatcgcgccaatgtctatagcctgctgtcatggaaacacgaaccaaaaatgcgccgattgcggcgcgtgttttctgaaaaaatggcgcgagaattgtttcgttgtggcgtgagaatttttcatttcccgaaccagaagcaaaaaatttacgcgccacgttttgaggaacgacgaacacaaaaattccggcgcgtaaaccgatccctgtataagccgatgtgtcaatgctttttggtttgagttcggtatcggaagagagtaatagtagtatcggatgaggtaacgcttcggatcgtcgatggggtgctgaaaggatgagattcggggaagggcaaaaaaattgctctatcggatgacagattccggtttgttctgcgtctcgtaaataaagacctttgcaacggaggtcctgtcccgattacttaagc Find is-nt database================================================ Query_seq: PG0213:PG0214|PG0213:PG0214:precorrin-3 methylase/precorrin-8X methylmutase:RNA polymerase sigma-70 factor, ECF subfamily:<-->:250555..251102 548 tttactgaaaacaaatgaaggtattggaagaatggagatggcgggcgaatagtgtttgcctgcgctccccacaaaagtaaagaaataagacatgcagccataacgccccgacatcgatccgatcgcgccaatgtctatagcctgctgtcatggaaacacgaaccaaaaatgcgccgattgcggcgcgtgttttctgaaaaaatggcgcgagaattgtttcgttgtggcgtgagaatttttcatttcccgaaccagaagcaaaaaatttacgcgccacgttttgaggaacgacgaacacaaaaattccggcgcgtaaaccgatccctgtataagccgatgtgtcaatgctttttggtttgagttcggtatcggaagagagtaatagtagtatcggatgaggtaacgcttcggatcgtcgatggggtgctgaaaggatgagattcggggaagggcaaaaaaattgctctatcggatgacagattccggtttgttctgcgtctcgtaaataaagacctttgcaacggaggtcctgtcccgattacttaagc Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PG0213:PG0214|PG0213:PG0214:precorrin-3 methylase/precorrin-8X methylmutase:RNA polymerase sigma-70 factor, ECF subfamily:<-->:250555..251102 548 tttactgaaaacaaatgaaggtattggaagaatggagatggcgggcgaatagtgtttgcctgcgctccccacaaaagtaaagaaataagacatgcagccataacgccccgacatcgatccgatcgcgccaatgtctatagcctgctgtcatggaaacacgaaccaaaaatgcgccgattgcggcgcgtgttttctgaaaaaatggcgcgagaattgtttcgttgtggcgtgagaatttttcatttcccgaaccagaagcaaaaaatttacgcgccacgttttgaggaacgacgaacacaaaaattccggcgcgtaaaccgatccctgtataagccgatgtgtcaatgctttttggtttgagttcggtatcggaagagagtaatagtagtatcggatgaggtaacgcttcggatcgtcgatggggtgctgaaaggatgagattcggggaagggcaaaaaaattgctctatcggatgacagattccggtttgttctgcgtctcgtaaataaagacctttgcaacggaggtcctgtcccgattacttaagc Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PG0213:PG0214|PG0213:PG0214:precorrin-3 methylase/precorrin-8X methylmutase:RNA polymerase sigma-70 factor, ECF subfamily:<-->:250555..251102 548 tttactgaaaacaaatgaaggtattggaagaatggagatggcgggcgaatagtgtttgcctgcgctccccacaaaagtaaagaaataagacatgcagccataacgccccgacatcgatccgatcgcgccaatgtctatagcctgctgtcatggaaacacgaaccaaaaatgcgccgattgcggcgcgtgttttctgaaaaaatggcgcgagaattgtttcgttgtggcgtgagaatttttcatttcccgaaccagaagcaaaaaatttacgcgccacgttttgaggaacgacgaacacaaaaattccggcgcgtaaaccgatccctgtataagccgatgtgtcaatgctttttggtttgagttcggtatcggaagagagtaatagtagtatcggatgaggtaacgcttcggatcgtcgatggggtgctgaaaggatgagattcggggaagggcaaaaaaattgctctatcggatgacagattccggtttgttctgcgtctcgtaaataaagacctttgcaacggaggtcctgtcccgattacttaagc Intra-Species Hit: Count: 0 Inter-species Hit: Count: 3 Min: 32 Max: 331 Len: 300 Subject: UniRef90_Q7MUH1 Cluster: Hypothetical protein; n=1; Porphyromonas gingivalis|Rep: Hypothetical protein - Porphyromonas gingivalis (Bacteroides gingivalis) HSP 1 e-value: 4.0E-13 bit: 76.6 Len: 300 Query Start:32 Query End:331 Subject Strand: null Subject Start: 4 Subject End: 102 ............................... Y T G I G L R A G I F V F V V P Q N V A R K F F A S G S G N E K F S R H N E T I L A P F F Q K T R A A I G A F L V R V S M T A G Y R H W R D R I D V G A L W L H V L F L Y F C G E R R Q T L F A R H L H ......................................................................................................................................................................................................................... ............................... Y N R I G L G S K I F P F A T P Q N A V R K L F Y F G V G S K K F S R H N E K I L A P L F Q G I R A T I G A F P V R V F L N S S F C K Q A E A I D E N L P R I H L P E K D F P E E K I E K I - R S H I H ......................................................................................................................................................................................................................... Subject: UniRef90_Q7MU89 Cluster: Hypothetical protein; n=1; Porphyromonas gingivalis|Rep: Hypothetical protein - Porphyromonas gingivalis (Bacteroides gingivalis) HSP 1 e-value: 7.0E-13 bit: 75.9 Len: 192 Query Start:128 Query End:319 Subject Strand: null Subject Start: 2 Subject End: 66 ............................................................................................................................... P M S I A C C H - G N T N Q K C A D C G A C F L K K W R E N C F V V A * E F F I S R T R S K K F T R H V L R N D E H K N S G A * T ..................................................................................................................................................................................................................................... ............................................................................................................................... P R G L Q C G H H G N T N Q K S S D C G S C F L K K W R E I F F V L A C K F F N C R A K T K K F S R H V F V G N K C E N S G T Q T ..................................................................................................................................................................................................................................... Subject: UniRef90_Q7MTB1 Cluster: Hypothetical protein; n=1; Porphyromonas gingivalis|Rep: Hypothetical protein - Porphyromonas gingivalis (Bacteroides gingivalis) HSP 1 e-value: 4.0E-10 bit: 66.6 Len: 129 Query Start:154 Query End:282 Subject Strand: null Subject Start: 4 Subject End: 46 ......................................................................................................................................................... K T W R V N F L L L V R E M K N S H A T T K Q F S R H F F R K H A P Q S A H F W F V F .......................................................................................................................................................................................................................................................................... ......................................................................................................................................................... K T W R E N F F V L V R E V K N L R A T A K K I S R H F F R K Y E P Q P G V F W F V F .......................................................................................................................................................................................................................................................................... tttactgaaaacaaatgaaggtattggaagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagccgatgtgtcaatgctttttggtttgagttcggtatcggaagagagtaatagtagtatcggatgaggtaacgcttcggatcgtcgatggggtgctgaaaggatgagattcggggaagggcaaaaaaattgctctatcggatgacagattccggtttgttctgcgtctcgtaaataaagacctttgcaacggaggtcctgtcccgattacttaagc Predict ORF larger than 30AA ================================================ Protein_Len: 39 Strand: + Start: 113 End: 229 ................................................................................................................ M D P I A P M S I A C C H G N T N Q K C A D C G A C F L K K W R E N C F V V A ............................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 49 End: 357 ................................................ M V F A C A P H K S K E I R H A A I T P R H R S D R A N V Y S L L S W K H E P K M R R L R R V F S E K M A R E L F R C G ............................................................................................................................................................................................... Protein_Len: 60 Strand: - Start: 345 End: 539 ........................................................................................................................................................................................................................................................................................................................................................ T R Y R F L T I T T D S S T V S R I T S P T S F P H S E P F P L F I A R D S S L N R N T R R R T F L S R Q L P P G T G M ......... Protein_Len: 60 Strand: - Start: 151 End: 441 ...................................................................................................................................................... F N V R W T K L F S S C L F E P A Y V S G Q I L R H T L A K Q N S N P I P L S Y Y Y Y R I L Y R K P D D I P H Q F S S M ........................................................................................................... Protein_Len: 33 Strand: - Start: 138 End: 236 ......................................................................................................................................... L R S D H F C S G F I R R N R R T N E S F I A R S N N R Q P T L M ........................................................................................................................................................................................................................................................................................................................ Protein_Len: 43 Strand: - Start: 3 End: 131 .. V S F L H L Y Q F F P S P P R I T N A Q A G W L L L S I L C A A M V G R C R D S R A M ................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 60 Strand: - Start: 5 End: 481 .... I G A R L G I G T Y A S T D I S K P K L E T D S S L L L L I P H P L A E S R R H P A S L I L N P S P C F F Q E I P H C M ................................................................... Protein_Len: 46 Strand: - Start: 1 End: 138 K S F V F S P I P L I S I A P S Y H K G A S G V F T F F Y S M C G Y R G S M S G I A G I D M .......................................................................................................................................................................................................................................................................................................................................................................................................................... tttactgaaaacaaatgaaggtattggaagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagccgatgtgtcaatgctttttggtttgagttcggtatcggaagagagtaatagtagtatcggatgaggtaacgcttcggatcgtcgatggggtgctgaaaggatgagattcggggaagggcaaaaaaattgctctatcggatgacagattccggtttgttctgcgtctcgtaaataaagacctttgcaacggaggtcctgtcccgattacttaagc Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ tttactgaaaacaaatgaaggtattggaagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagccgatgtgtcaatgctttttggtttgagttcggtatcggaagagagtaatagtagtatcggatgaggtaacgcttcggatcgtcgatggggtgctgaaaggatgagattcggggaagggcaaaaaaattgctctatcggatgacagattccggtttgttctgcgtctcgtaaataaagacctttgcaacggaggtcctgtcccgattacttaagc Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 54 HP_score: -3.7 Tail_Score: -3.6579 Start: 33 End: 71 Full_Region: atttctttacttttg tggggagcgcaggcaaa cacta ttcgcccgccatctcca ttcttccaatacctt ................................tggggagcgcaggcaaacactattcgcccgccatctcca............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. TransTerm Strand: + Conf: 76 HP_score: -7.9 Tail_Score: -4.3739 Start: 168 End: 189 Full_Region: GAAACACGAACCAAA AATGCGCCG ATTG CGGCGCGTG TTTTCTGAAAAAATG .......................................................................................................................................................................AATGCGCCGATTGCGGCGCGTG....................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 83 HP_score: -10.5 Tail_Score: -3.79419 Start: 170 End: 187 Full_Region: AACACGAACCAAAAA TGCGCCG ATTG CGGCGCG TGTTTTCTGAAAAAA .........................................................................................................................................................................TGCGCCGATTGCGGCGCG......................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 91 HP_score: -8.3 Tail_Score: -4.92777 Start: 170 End: 187 Full_Region: ttttttcagaaaaca cgcgccg caat cggcgca tttttggttcgtgtt .........................................................................................................................................................................cgcgccgcaatcggcgca......................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 77 HP_score: -11.8 Tail_Score: -2.8733 Start: 171 End: 186 Full_Region: ACACGAACCAAAAAT GCGCCG ATTG CGGCGC GTGTTTTCTGAAAAA ..........................................................................................................................................................................GCGCCGATTGCGGCGC.......................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 86 HP_score: -11.8 Tail_Score: -3.54039 Start: 171 End: 186 Full_Region: tttttcagaaaacac gcgccg caat cggcgc atttttggttcgtgt ..........................................................................................................................................................................gcgccgcaatcggcgc.......................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 59 HP_score: -3.4 Tail_Score: -4.07568 Start: 223 End: 278 Full_Region: CGAGAATTGTTTCGT TGTGGCGTGAGAATTTTTCATTTC CCGAACCA GAAGCAAAAAATTTACGCGCCACG TTTTGAGGAACGACG ..............................................................................................................................................................................................................................TGTGGCGTGAGAATTTTTCATTTCCCGAACCAGAAGCAAAAAATTTACGCGCCACG.............................................................................................................................................................................................................................................................................. TransTerm Strand: + Conf: 50 HP_score: -4.7 Tail_Score: -3.04398 Start: 224 End: 277 Full_Region: GAGAATTGTTTCGTT GTGGCGTGAGAATTTTTCATTTC CCGAACCA GAAGCAAAAAATTTACGCGCCAC GTTTTGAGGAACGAC ...............................................................................................................................................................................................................................GTGGCGTGAGAATTTTTCATTTCCCGAACCAGAAGCAAAAAATTTACGCGCCAC............................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 44 HP_score: -3.4 Tail_Score: -2.89564 Start: 452 End: 464 Full_Region: GAGATTCGGGGAAGG GCAA AAAAA TTGC TCTATCGGATGACAG ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAAAAATTGC.................................................................................... Find igs database================================================ Query_seq: PG0213:PG0214|PG0213:PG0214:precorrin-3 methylase/precorrin-8X methylmutase:RNA polymerase sigma-70 factor, ECF subfamily:<-->:250555..251102 548 tttactgaaaacaaatgaaggtattggaagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagccgatgtgtcaatgctttttggtttgagttcggtatcggaagagagtaatagtagtatcggatgaggtaacgcttcggatcgtcgatggggtgctgaaaggatgagattcggggaagggcaaaaaaattgctctatcggatgacagattccggtttgttctgcgtctcgtaaataaagacctttgcaacggaggtcctgtcccgattacttaagc Intra-Species Hit: Count: 1 Min: 1 Max: 548 Len: 548 Subject: NC_002950_PG0213_PG0214|precorrin-3 methylase/precorrin-8X methylmutase:RNA polymerase sigma-70 factor, ECF subfamily|NEGATIVE:POSITIVE|[250555,251102]|548 HSP 1 e-value: 1.0E-107 bit: 389.0 Len: 217 Query Start:332 Query End:548 Subject Strand: POSITIVE Subject Start: 332 Subject End: 548 ...........................................................................................................................................................................................................................................................................................................................................agccgatgtgtcaatgctttttggtttgagttcggtatcggaagagagtaatagtagtatcggatgaggtaacgcttcggatcgtcgatggggtgctgaaaggatgagattcggggaagggcnnnnnnnttgctctatcggatgacagattccggtttgttctgcgtctcgtaaataaagacctttgcaacggaggtcctgtcccgattacttaagc ...........................................................................................................................................................................................................................................................................................................................................agccgatgtgtcaatgctttttggtttgagttcggtatcggaagagagtaatagtagtatcggatgaggtaacgcttcggatcgtcgatggggtgctgaaaggatgagattcggggaagggcaaaaaaattgctctatcggatgacagattccggtttgttctgcgtctcgtaaataaagacctttgcaacggaggtcctgtcccgattacttaagc HSP 2 e-value: 2.0E-8 bit: 61.9 Len: 31 Query Start:1 Query End:31 Subject Strand: POSITIVE Subject Start: 1 Subject End: 31 tttactgaaaacaaatgaaggtattggaaga..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... tttactgaaaacaaatgaaggtattggaaga..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UUUACUGAAAACAAAUGAAGGUAUUGGAAGAAUGGAGAUGGCGGGCGAAUAGUGUUUGCCUGCGCUCCCCACAAAAGUAAAGAAAUAAGACAUGCAGCCAUAACGCCCCGACAUCGAUCCGAUCGCGCCAAUGUCUAUAGCCUGCUGUCAUGGAAACACGAACCAAAAAUGCGCCGAUUGCGGCGCGUGUUUUCUGAAAAAAUGGCGCGAGAAUUGUUUCGUUGUGGCGUGAGAAUUUUUCAUUUCCCGAACCAGAAGCAAAAAAUUUACGCGCCACGUUUUGAGGAACGACGAACACAAAAAUUCCGGCGCGUAAACCGAUCCCUGUAUAAGCCGAUGUGUCAAUGCUUUUUGGUUUGAGUUCGGUAUCGGAAGAGAGUAAUAGUAGUAUCGGAUGAGGUAACGCUUCGGAUCGUCGAUGGGGUGCUGAAAGGAUGAGAUUCGGGGAAGGGCAAAAAAAUUGCUCUAUCGGAUGACAGAUUCCGGUUUGUUCUGCGUCUCGUAAAUAAAGACCUUUGCAACGGAGGUCCUGUCCCGAUUACUUAAGC ..................(((((((((......((((...((((((((((...)))))))))).))))....................((((..((((......((((((.(..((((((((.((((((....(((...(((.....(((.((((((((...........((((((....)))))))))))))))))......)))...))).(((((((..(((((((((.((((((((..((((........))))..)))))))).)))))))))......)))))))................))))))....(((((((..(..((((((((.((......))...))))))))..)..)).)))))...........(((..((((......))))..)))))))))))..).)))))))))).....(((((((.(((((.(((((((.....)))))))((((((........))))))...))))).))))))).......((((((((...)))))))).)))))))).))))).... (-178.30) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ GCUUAAGUAAUCGGGACAGGACCUCCGUUGCAAAGGUCUUUAUUUACGAGACGCAGAACAAACCGGAAUCUGUCAUCCGAUAGAGCAAUUUUUUUGCCCUUCCCCGAAUCUCAUCCUUUCAGCACCCCAUCGACGAUCCGAAGCGUUACCUCAUCCGAUACUACUAUUACUCUCUUCCGAUACCGAACUCAAACCAAAAAGCAUUGACACAUCGGCUUAUACAGGGAUCGGUUUACGCGCCGGAAUUUUUGUGUUCGUCGUUCCUCAAAACGUGGCGCGUAAAUUUUUUGCUUCUGGUUCGGGAAAUGAAAAAUUCUCACGCCACAACGAAACAAUUCUCGCGCCAUUUUUUCAGAAAACACGCGCCGCAAUCGGCGCAUUUUUGGUUCGUGUUUCCAUGACAGCAGGCUAUAGACAUUGGCGCGAUCGGAUCGAUGUCGGGGCGUUAUGGCUGCAUGUCUUAUUUCUUUACUUUUGUGGGGAGCGCAGGCAAACACUAUUCGCCCGCCAUCUCCAUUCUUCCAAUACCUUCAUUUGUUUUCAGUAAA ((..((((((..((((.(((((((.........))))))).......(((((((((.......(((..((((((....))))))((((.....))))......)))..............(((.((((..((.((((((((.((((((..((....)).....((((..((..((((.((.(((((((.((((...................((((..((((((((((((((......))))..))))))))))..))))...((.((((.((((((((..(((((((((.((.((((..(((((.(....).)))))..)))).))))))).))))..)))))))).)))).)).......((((((....))))))...))))))))).)).))...)).))..))..))))....))))))..)))))))).))..)))).)))....))))..)))))..))))))))))..))(((((..((.(((...........))).))..)))))................................. (-152.10) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 1068 140 91 231 182 NC_002950:PG0213|5end_precorrin-3_methylase/precorrin-8X_methylmutase_250464..250694_NEGATIVE 769 250 201 86 36 NC_002950:PG1980|5end_hypothetical_protein_2067930..2068160_NEGATIVE 658 250 201 64 15 NC_002950:PG1799|5end_hypothetical_protein_1894499..1894729_POSITIVE 524 287 242 87 42 NC_002950:PG2064|5end_hypothetical_protein_2160550..2160780_POSITIVE 495 212 174 48 10 NC_002950:PG0174|5end_pyridine_nucleotide-disulphide_oxidoreductase_family_protein_197628..197858_NEGATIVE 488 250 203 179 132 NC_002950:PG0081|5end_hypothetical_protein_93805..94035_POSITIVE 487 68 22 152 101 NC_002950:PG0725|5end_hydrolase,_haloacid_dehalogenase-like_family_777260..777490_POSITIVE 452 250 203 108 61 NC_002950:PG0007|5end_hypothetical_protein_6913..7143_NEGATIVE 443 135 92 53 9 NC_002950:PG1936|5end_ribosomal_protein_L23_2023492..2023722_NEGATIVE 438 439 391 88 28 NC_002950:PG1544|5end_hypothetical_protein_1622592..1622822_POSITIVE 426 230 182 72 27 NC_002950:PG0146|5end_hypothetical_protein_169115..169345_NEGATIVE 419 309 261 111 62 NC_002950:PG0313|5end_hypothetical_protein_347366..347596_POSITIVE 413 294 252 43 1 NC_002950:PG0524|5end_hypothetical_protein_568599..568829_POSITIVE 412 190 141 78 7 NC_002950:PG2030|5end_hypothetical_protein_2129747..2129977_POSITIVE 409 229 186 138 94 NC_002950:PG2063|5end_hypothetical_protein_2160596..2160826_NEGATIVE 402 69 24 195 145 NC_002950:PG1842|5end_acetyltransferase,_GNAT_family_1938241..1938471_POSITIVE 402 73 32 47 6 NC_002950:PG0580|5end_N-acetylglucosaminyl_transferase_637097..637327_POSITIVE 400 209 162 202 157 NC_002950:PG1760|5end_ABC_transporter,_ATP-binding_protein_1846507..1846737_POSITIVE 392 70 26 188 125 NC_002950:PG1481|5end_conjugative_transposon_protein_TraG_1558447..1558677_NEGATIVE 392 433 391 214 176 NC_002950:PG0433|5end_tetrapyrrole_methylase_family_protein_471396..471626_NEGATIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 580 339 292 53 7 NC_002950:PG0354|3end_hypothetical_protein_389131..389281_NEGATIVE 487 68 22 67 16 NC_002950:PG0724|3end_prolyl_oligopeptidase_family_protein_777255..777405_POSITIVE 447 372 333 105 65 NC_002950:PG0002|3end_hexapeptide_transferase_family_protein_1947..2097_POSITIVE 426 230 182 59 14 NC_002950:PG0147|3end_hypothetical_protein_169128..169278_NEGATIVE 408 440 392 64 20 NC_002950:PG0143|3end_hydrolase,_carbon-nitrogen_family_165747..165897_NEGATIVE 405 135 96 38 1 NC_002950:PG1937|3end_50S_ribosomal_protein_L4_2023507..2023657_NEGATIVE 402 73 32 50 9 NC_002950:PG0579|3end_cell_division_protein_FtsW,_putative_637180..637330_POSITIVE 390 448 405 86 46 NC_002950:PG0228|3end_DdaH_family_protein_264024..264174_NEGATIVE 389 455 413 61 10 NC_002950:PG2145|3end_polysaccharide_deacetylase_2253938..2254088_POSITIVE 389 257 217 36 1 NC_002950:PG1626|3end_hypothetical_protein_1710486..1710636_POSITIVE 386 310 261 116 70 NC_002950:PG0732|3end_hypothetical_protein_783018..783168_POSITIVE 385 470 421 112 56 NC_002950:PG0411|3end_hemagglutinin,_putative_449358..449508_POSITIVE 384 449 404 134 73 NC_002950:PG0199|3end_TatD_family_protein_237424..237574_NEGATIVE 380 149 104 46 1 NC_002950:PG1875|3end_hemolysin_1969647..1969797_NEGATIVE 376 154 121 147 121 NC_002950:PG0445|3end_peptidase_T_486549..486699_POSITIVE 366 528 481 57 6 NC_002950:PG1846|3end_hypothetical_protein_1946254..1946404_POSITIVE 364 190 142 114 54 NC_002950:PG1391|3end_hypothetical_protein_1472961..1473111_POSITIVE 360 130 92 151 110 NC_002950:PG1151|3end_alcohol_dehydrogenase,_iron-containing_1234378..1234528_POSITIVE 359 451 411 149 111 NC_002950:PG0608|3end_hypothetical_protein_663159..663309_POSITIVE 358 210 163 81 40 NC_002950:PG0211|3end_cobalamin_biosynthesis_protein_CbiG/precorrin-4_C11-methyltransferase_245966..246116_NEGATIVE