Origin IGS: tttctttttctggtttgtgttactcaaaattagtcttgtcctaatttcccatcacacctgccgcctaaagccggaggccatgagtcatcaaaaacgctgcaaagataggaaaaataaagattcgcacagaaaacctgccgaaggtgagctttgtttttcagtacacatcaaagtttatttgccgagaaagagcaaatgattttttcgagcgtaaaacggacgaattgccgttcgtgttttccggaaaaatggaaccataaatttttcgttttggtttgagaacttttttcttccggcgcgggaagtgaaaaattctcgcgccacgttttttcgttccgtctgaaacaattttttggaacgtaaaaactcgaagagggcgagggcggatcaaaagaaaataagtccgaatcggaggaaaaaagcagcaagccaatgcaggttcaaaggcaagttgtgtcgtttttcaggcttctccatttgctgtataacttccgtctaatcccgatcttggcagcagtatcggtggagttgggactttcggacaattatcaacggtgctcaattcattatctttgcagcaatttagatacgaaaaaataatctgaacaata .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 tattgttcagattattttttcgtatctaaattgctgcaaagataatgaattgagcaccgttgataattgtccgaaagtcccaactccaccgatactgctgccaagatcgggattagacggaagttatacagcaaatggagaagcctgaaaaacgacacaacttgcctttgaacctgcattggcttgctgcttttttcctccgattcggacttattttcttttgatccgccctcgccctcttcgagtttttacgttccaaaaaattgtttcagacggaacgaaaaaacgtggcgcgagaatttttcacttcccgcgccggaagaaaaaagttctcaaaccaaaacgaaaaatttatggttccatttttccggaaaacacgaacggcaattcgtccgttttacgctcgaaaaaatcatttgctctttctcggcaaataaactttgatgtgtactgaaaaacaaagctcaccttcggcaggttttctgtgcgaatctttatttttcctatctttgcagcgtttttgatgactcatggcctccggctttaggcggcaggtgtgatgggaaattaggacaagactaattttgagtaacacaaaccagaaaaagaaa Mask Tandem Repeat Region ================================================ tttctttttctggtttgtgttactcaaaattagtcttgtcctaatttcccatcacacctgccgcctaaagccggaggccatgagtcatcaaaaacgctgcaaagataggaaaaataaagattcgcacagaaaacctgccgaaggtgagctttgtttttcagtacacatcaaagtttatttgccgagaaagagcaaatgattttttcgagcgtaaaacggacgaattgccgttcgtgttttccggaaaaatggaaccataaatttttcgttttggtttgagaacttttttcttccggcgcgggaagtgaaaaattctcgcgccacgttttttcgttccgtctgaaacaattttttggaacgtaaaaactcgaagagggcgagggcggatcaaaagaaaataagtccgaatcggaggaaaaaagcagcaagccaatgcaggttcaaaggcaagttgtgtcgtttttcaggcttctccatttgctgtataacttccgtctaatcccgatcttggcagcagtatcggtggagttgggactttcggacaattatcaacggtgctcaattcattatctttgcagcaatttagatacgaaaaaataatctgaacaata Find is-nt database================================================ Query_seq: PG0167:PG0170|PG0167:PG0170:ribosomal protein L25:methionyl-tRNA synthetase:<-->:189181..189791 611 tttctttttctggtttgtgttactcaaaattagtcttgtcctaatttcccatcacacctgccgcctaaagccggaggccatgagtcatcaaaaacgctgcaaagataggaaaaataaagattcgcacagaaaacctgccgaaggtgagctttgtttttcagtacacatcaaagtttatttgccgagaaagagcaaatgattttttcgagcgtaaaacggacgaattgccgttcgtgttttccggaaaaatggaaccataaatttttcgttttggtttgagaacttttttcttccggcgcgggaagtgaaaaattctcgcgccacgttttttcgttccgtctgaaacaattttttggaacgtaaaaactcgaagagggcgagggcggatcaaaagaaaataagtccgaatcggaggaaaaaagcagcaagccaatgcaggttcaaaggcaagttgtgtcgtttttcaggcttctccatttgctgtataacttccgtctaatcccgatcttggcagcagtatcggtggagttgggactttcggacaattatcaacggtgctcaattcattatctttgcagcaatttagatacgaaaaaataatctgaacaata Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PG0167:PG0170|PG0167:PG0170:ribosomal protein L25:methionyl-tRNA synthetase:<-->:189181..189791 611 tttctttttctggtttgtgttactcaaaattagtcttgtcctaatttcccatcacacctgccgcctaaagccggaggccatgagtcatcaaaaacgctgcaaagataggaaaaataaagattcgcacagaaaacctgccgaaggtgagctttgtttttcagtacacatcaaagtttatttgccgagaaagagcaaatgattttttcgagcgtaaaacggacgaattgccgttcgtgttttccggaaaaatggaaccataaatttttcgttttggtttgagaacttttttcttccggcgcgggaagtgaaaaattctcgcgccacgttttttcgttccgtctgaaacaattttttggaacgtaaaaactcgaagagggcgagggcggatcaaaagaaaataagtccgaatcggaggaaaaaagcagcaagccaatgcaggttcaaaggcaagttgtgtcgtttttcaggcttctccatttgctgtataacttccgtctaatcccgatcttggcagcagtatcggtggagttgggactttcggacaattatcaacggtgctcaattcattatctttgcagcaatttagatacgaaaaaataatctgaacaata Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PG0167:PG0170|PG0167:PG0170:ribosomal protein L25:methionyl-tRNA synthetase:<-->:189181..189791 611 tttctttttctggtttgtgttactcaaaattagtcttgtcctaatttcccatcacacctgccgcctaaagccggaggccatgagtcatcaaaaacgctgcaaagataggaaaaataaagattcgcacagaaaacctgccgaaggtgagctttgtttttcagtacacatcaaagtttatttgccgagaaagagcaaatgattttttcgagcgtaaaacggacgaattgccgttcgtgttttccggaaaaatggaaccataaatttttcgttttggtttgagaacttttttcttccggcgcgggaagtgaaaaattctcgcgccacgttttttcgttccgtctgaaacaattttttggaacgtaaaaactcgaagagggcgagggcggatcaaaagaaaataagtccgaatcggaggaaaaaagcagcaagccaatgcaggttcaaaggcaagttgtgtcgtttttcaggcttctccatttgctgtataacttccgtctaatcccgatcttggcagcagtatcggtggagttgggactttcggacaattatcaacggtgctcaattcattatctttgcagcaatttagatacgaaaaaataatctgaacaata Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 tttctttttctggtttgtgttactcaaaattagtcttgtcctaatttcccatcacacctgccgcctaaagccggaggccatgagtcatcaaaaacgctgcaaagataggaaaaataaagattcgcacagaaaacctgccgaaggtgagctttgtttttcagtacacatcaaagtttatttgccgagaaagagcaaatgattttttcgagcgtaaaacggacgaattgccgttcgtgttttccggaaaaatggaaccataaatttttcgttttggtttgagaacttttttcttccggcgcgggaagtgaaaaattctcgcgccacgttttttcgttccgtctgaaacaattttttggaacgtaaaaactcgaagagggcgagggcggatcaaaagaaaataagtccgaatcggaggaaaaaagcagcaagccaatgcaggttcaaaggcaagttgtgtcgtttttcaggcttctccatttgctgtataacttccgtctaatcccgatcttggcagcagtatcggtggagttgggactttcggacaattatcaacggtgctcaattcattatctttgcagcaatttagatacgaaaaaataatctgaacaata Predict ORF larger than 30AA ================================================ Protein_Len: 60 Strand: + Start: 17 End: 196 ................ M L L K I S L V L I S H H T C R L K P E A M S H Q K R C K D R K N K D S H R K P A E G E L C F S V H I K V Y L P R K S K ............................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 57 Strand: + Start: 87 End: 257 ...................................................................................... M K N A A K I G K I K I R T E N L P K V S F V F Q Y T S K F I C R E R A N D F F E R K T D E L P F V F S G K M E P .................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 42 Strand: + Start: 151 End: 276 ...................................................................................................................................................... M F F S T H Q S L F A E K E Q M I F S S V K R T N C R S C F P E K W N H K F F V L V ............................................................................................................................................................................................................................................................................................................................................... Protein_Len: 39 Strand: + Start: 224 End: 340 ............................................................................................................................................................................................................................... M A V R V F R K N G T I N F S F W F E N F F L P A R E V K N S R A T F F R S V ............................................................................................................................................................................................................................................................................... Protein_Len: 48 Strand: + Start: 353 End: 496 ................................................................................................................................................................................................................................................................................................................................................................ M E R K N S K R A R A D Q K K I S P N R R K K A A S Q C R F K G K L C R F S G F S I C C I T S V ................................................................................................................... Protein_Len: 55 Strand: + Start: 433 End: 597 ................................................................................................................................................................................................................................................................................................................................................................................................................................................ M Q V Q R Q V V S F F R L L H L L Y N F R L I P I L A A V S V E L G L S D N Y Q R C S I H Y L C S N L D T K K .............. Protein_Len: 48 Strand: - Start: 467 End: 610 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. A E G N A T Y S G D L G S R P L L I P P T P V K P C N D V T S L E N D K C C N L Y S F I I Q V M . Protein_Len: 34 Strand: - Start: 444 End: 545 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................... L C T T D N K L S R W K S Y L K R R I G I K A A T D T S N P S E S M .................................................................. Protein_Len: 32 Strand: - Start: 391 End: 486 ...................................................................................................................................................................................................................................................................................................................................................................................................... F F I L G F R L F F A A L W H L N L P L N H R K E P K E M Q Q M ............................................................................................................................. Protein_Len: 57 Strand: - Start: 178 End: 348 ................................................................................................................................................................................. K G L F L L H N K R A Y F P R I A T R T K R F F P V M F K E N Q N S F K K R G A R S T F F E R A V N K R E T Q F M ....................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: - Start: 171 End: 434 .......................................................................................................................................................................... W L N K T K T Q S S K E E P A P L S F N E R W T K E N R R F C N K P V Y F S S S P S P P D F S F L D S D S S F L L L G M ................................................................................................................................................................................. Protein_Len: 60 Strand: - Start: 161 End: 433 ................................................................................................................................................................ G Y I K R K P K L V K K K R R P F H F I R A G R K K T G D S V I K Q F T F V R L P R P R I L L F Y T R I P P F F C C A M .................................................................................................................................................................................. Protein_Len: 43 Strand: - Start: 33 End: 161 ................................ D Q G L K G D C R G G L A P P W S D D F V S C L Y S F Y L N A C F V Q R L H A K N K M .................................................................................................................................................................................................................................................................................................................................................................................................................................................................. tttctttttctggtttgtgttactcaaaattagtcttgtcctaatttcccatcacacctgccgcctaaagccggaggccatgagtcatcaaaaacgctgcaaagataggaaaaataaagattcgcacagaaaacctgccgaaggtgagctttgtttttcagtacacatcaaagtttatttgccgagaaagagcaaatgattttttcgagcgtaaaacggacgaattgccgttcgtgttttccggaaaaatggaaccataaatttttcgttttggtttgagaacttttttcttccggcgcgggaagtgaaaaattctcgcgccacgttttttcgttccgtctgaaacaattttttggaacgtaaaaactcgaagagggcgagggcggatcaaaagaaaataagtccgaatcggaggaaaaaagcagcaagccaatgcaggttcaaaggcaagttgtgtcgtttttcaggcttctccatttgctgtataacttccgtctaatcccgatcttggcagcagtatcggtggagttgggactttcggacaattatcaacggtgctcaattcattatctttgcagcaatttagatacgaaaaaataatctgaacaata Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ tttctttttctggtttgtgttactcaaaattagtcttgtcctaatttcccatcacacctgccgcctaaagccggaggccatgagtcatcaaaaacgctgcaaagataggaaaaataaagattcgcacagaaaacctgccgaaggtgagctttgtttttcagtacacatcaaagtttatttgccgagaaagagcaaatgattttttcgagcgtaaaacggacgaattgccgttcgtgttttccggaaaaatggaaccataaatttttcgttttggtttgagaacttttttcttccggcgcgggaagtgaaaaattctcgcgccacgttttttcgttccgtctgaaacaattttttggaacgtaaaaactcgaagagggcgagggcggatcaaaagaaaataagtccgaatcggaggaaaaaagcagcaagccaatgcaggttcaaaggcaagttgtgtcgtttttcaggcttctccatttgctgtataacttccgtctaatcccgatcttggcagcagtatcggtggagttgggactttcggacaattatcaacggtgctcaattcattatctttgcagcaatttagatacgaaaaaataatctgaacaata Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 63 HP_score: -2.1 Tail_Score: -4.66163 Start: 139 End: 153 Full_Region: GCACAGAAAACCTGC CGAAG GTGAG CTTTG TTTTTCAGTACACAT ..........................................................................................................................................CGAAGGTGAGCTTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 55 HP_score: -2.2 Tail_Score: -4.07885 Start: 215 End: 236 Full_Region: TTTTTTCGAGCGTAA AACGGACG AATTGC CGTTCGTG TTTTCCGGAAAAATG ......................................................................................................................................................................................................................AACGGACGAATTGCCGTTCGTG....................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 57 HP_score: -4.8 Tail_Score: -3.63744 Start: 217 End: 234 Full_Region: TTTTCGAGCGTAAAA CGGACG AATTGC CGTTCG TGTTTTCCGGAAAAA ........................................................................................................................................................................................................................CGGACGAATTGCCGTTCG......................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 82 HP_score: -4.8 Tail_Score: -5.28481 Start: 293 End: 325 Full_Region: GAGAACTTTTTTCTT CCGGCGCGGGAAGT GAAA AATTCTCGCGCCACG TTTTTTCGTTCCGTC ....................................................................................................................................................................................................................................................................................................CCGGCGCGGGAAGTGAAAAATTCTCGCGCCACG.............................................................................................................................................................................................................................................................................................. Find igs database================================================ Query_seq: PG0167:PG0170|PG0167:PG0170:ribosomal protein L25:methionyl-tRNA synthetase:<-->:189181..189791 611 tttctttttctggtttgtgttactcaaaattagtcttgtcctaatttcccatcacacctgccgcctaaagccggaggccatgagtcatcaaaaacgctgcaaagataggaaaaataaagattcgcacagaaaacctgccgaaggtgagctttgtttttcagtacacatcaaagtttatttgccgagaaagagcaaatgattttttcgagcgtaaaacggacgaattgccgttcgtgttttccggaaaaatggaaccataaatttttcgttttggtttgagaacttttttcttccggcgcgggaagtgaaaaattctcgcgccacgttttttcgttccgtctgaaacaattttttggaacgtaaaaactcgaagagggcgagggcggatcaaaagaaaataagtccgaatcggaggaaaaaagcagcaagccaatgcaggttcaaaggcaagttgtgtcgtttttcaggcttctccatttgctgtataacttccgtctaatcccgatcttggcagcagtatcggtggagttgggactttcggacaattatcaacggtgctcaattcattatctttgcagcaatttagatacgaaaaaataatctgaacaata Intra-Species Hit: Count: 1 Min: 1 Max: 611 Len: 611 Subject: NC_002950_PG0167_PG0170|ribosomal protein L25:methionyl-tRNA synthetase|NEGATIVE:POSITIVE|[189181,189791]|611 HSP 1 e-value: 0.0 bit: 1211.0 Len: 611 Query Start:1 Query End:611 Subject Strand: POSITIVE Subject Start: 1 Subject End: 611 tttctttttctggtttgtgttactcaaaattagtcttgtcctaatttcccatcacacctgccgcctaaagccggaggccatgagtcatcaaaaacgctgcaaagataggaaaaataaagattcgcacagaaaacctgccgaaggtgagctttgtttttcagtacacatcaaagtttatttgccgagaaagagcaaatgattttttcgagcgtaaaacggacgaattgccgttcgtgttttccggaaaaatggaaccataaatttttcgttttggtttgagaacttttttcttccggcgcgggaagtgaaaaattctcgcgccacgttttttcgttccgtctgaaacaattttttggaacgtaaaaactcgaagagggcgagggcggatcaaaagaaaataagtccgaatcggaggaaaaaagcagcaagccaatgcaggttcaaaggcaagttgtgtcgtttttcaggcttctccatttgctgtataacttccgtctaatcccgatcttggcagcagtatcggtggagttgggactttcggacaattatcaacggtgctcaattcattatctttgcagcaatttagatacgaaaaaataatctgaacaata tttctttttctggtttgtgttactcaaaattagtcttgtcctaatttcccatcacacctgccgcctaaagccggaggccatgagtcatcaaaaacgctgcaaagataggaaaaataaagattcgcacagaaaacctgccgaaggtgagctttgtttttcagtacacatcaaagtttatttgccgagaaagagcaaatgattttttcgagcgtaaaacggacgaattgccgttcgtgttttccggaaaaatggaaccataaatttttcgttttggtttgagaacttttttcttccggcgcgggaagtgaaaaattctcgcgccacgttttttcgttccgtctgaaacaattttttggaacgtaaaaactcgaagagggcgagggcggatcaaaagaaaataagtccgaatcggaggaaaaaagcagcaagccaatgcaggttcaaaggcaagttgtgtcgtttttcaggcttctccatttgctgtataacttccgtctaatcccgatcttggcagcagtatcggtggagttgggactttcggacaattatcaacggtgctcaattcattatctttgcagcaatttagatacgaaaaaataatctgaacaata Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UUUCUUUUUCUGGUUUGUGUUACUCAAAAUUAGUCUUGUCCUAAUUUCCCAUCACACCUGCCGCCUAAAGCCGGAGGCCAUGAGUCAUCAAAAACGCUGCAAAGAUAGGAAAAAUAAAGAUUCGCACAGAAAACCUGCCGAAGGUGAGCUUUGUUUUUCAGUACACAUCAAAGUUUAUUUGCCGAGAAAGAGCAAAUGAUUUUUUCGAGCGUAAAACGGACGAAUUGCCGUUCGUGUUUUCCGGAAAAAUGGAACCAUAAAUUUUUCGUUUUGGUUUGAGAACUUUUUUCUUCCGGCGCGGGAAGUGAAAAAUUCUCGCGCCACGUUUUUUCGUUCCGUCUGAAACAAUUUUUUGGAACGUAAAAACUCGAAGAGGGCGAGGGCGGAUCAAAAGAAAAUAAGUCCGAAUCGGAGGAAAAAAGCAGCAAGCCAAUGCAGGUUCAAAGGCAAGUUGUGUCGUUUUUCAGGCUUCUCCAUUUGCUGUAUAACUUCCGUCUAAUCCCGAUCUUGGCAGCAGUAUCGGUGGAGUUGGGACUUUCGGACAAUUAUCAACGGUGCUCAAUUCAUUAUCUUUGCAGCAAUUUAGAUACGAAAAAAUAAUCUGAACAAUA ....((((((.(((..((((......(((((((.......)))))))......))))..)))..(((((...(..(((.....)))..)......((((((((((((.(((((((((((.(((((.(((.....)))......))))))))))))))))..........((((.(((((((((......).)))))))).))))..((((.....(((((((......)))))))....((((......))))(((......(((((.((((((((((....(((((((((((.((((((((((.(....).))))))))))..((((((.(((((((...(((....)))..))))))).))))))..)))))))).)))..)))))))))))))))...(((((((.((((((......((((((((.....((..(......((((.....))))......)..)).......))))))))....)))))).....((((((.(((.((..........)).)))))))))..)))))))..........))))))).......))))))))))))..)))))....))))))............... (-178.00) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAUUGUUCAGAUUAUUUUUUCGUAUCUAAAUUGCUGCAAAGAUAAUGAAUUGAGCACCGUUGAUAAUUGUCCGAAAGUCCCAACUCCACCGAUACUGCUGCCAAGAUCGGGAUUAGACGGAAGUUAUACAGCAAAUGGAGAAGCCUGAAAAACGACACAACUUGCCUUUGAACCUGCAUUGGCUUGCUGCUUUUUUCCUCCGAUUCGGACUUAUUUUCUUUUGAUCCGCCCUCGCCCUCUUCGAGUUUUUACGUUCCAAAAAAUUGUUUCAGACGGAACGAAAAAACGUGGCGCGAGAAUUUUUCACUUCCCGCGCCGGAAGAAAAAAGUUCUCAAACCAAAACGAAAAAUUUAUGGUUCCAUUUUUCCGGAAAACACGAACGGCAAUUCGUCCGUUUUACGCUCGAAAAAAUCAUUUGCUCUUUCUCGGCAAAUAAACUUUGAUGUGUACUGAAAAACAAAGCUCACCUUCGGCAGGUUUUCUGUGCGAAUCUUUAUUUUUCCUAUCUUUGCAGCGUUUUUGAUGACUCAUGGCCUCCGGCUUUAGGCGGCAGGUGUGAUGGGAAAUUAGGACAAGACUAAUUUUGAGUAACACAAACCAGAAAAAGAAA ...(((((((.(((((((((.(((.(......).))).)))).))))).)))))))..........((((((.....(((((..((((((......(((((.(((((.((((...(((....))).......(((((((((....(....)..........(((((...((((((((...((...(((...((((((......((((((....((((((((((...((((.(((.......)))((((((.((((((.................)))))).))))))..)))).((((((((((..(((((......)))))..))))))))))....))))).)))))....(((....)))...))))))......(((((((.....).))))))((((((((((......(((((((.......)))))))....))))).)))))..))))))...)))...))....))))))))...).)))).))))))))).))))))))).))))).................(((.((.......)).))).)))).))))))).....))))))..((..(((((.((.......)))))))..))... (-160.83) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 1063 100 51 191 142 NC_002950:PG0167|5end_ribosomal_protein_L25_189090..189320_NEGATIVE 481 335 291 183 138 NC_002950:PG0132|5end_hypothetical_protein_152879..153109_POSITIVE 443 330 284 83 36 NC_002950:PG2064|5end_hypothetical_protein_2160550..2160780_POSITIVE 438 516 471 154 102 NC_002950:PG0746|5end_sensor_histidine_kinase_793903..794133_NEGATIVE 416 330 285 119 72 NC_002950:PG1980|5end_hypothetical_protein_2067930..2068160_NEGATIVE 413 330 287 80 42 NC_002950:PG0080|5end_hypothetical_protein_93832..94062_NEGATIVE 401 559 511 189 137 NC_002950:PG1418|5end_DNA_polymerase_III,_gamma_and_tau_subunits_1503064..1503294_POSITIVE 398 329 284 96 50 NC_002950:PG1799|5end_hypothetical_protein_1894499..1894729_POSITIVE 397 540 492 224 173 NC_002950:PG0744|5end_RNA_methyltransferase,_TrmH_family_791897..792127_NEGATIVE 395 324 284 162 121 NC_002950:PG2063|5end_hypothetical_protein_2160596..2160826_NEGATIVE 392 460 412 82 32 NC_002950:PG1139|5end_hypothetical_protein_1222064..1222294_NEGATIVE 391 340 294 172 131 NC_002950:PG0504|5end_lipoyl_synthase_544234..544464_POSITIVE 390 330 284 85 38 NC_002950:PG0313|5end_hypothetical_protein_347366..347596_POSITIVE 387 330 282 115 66 NC_002950:PG1617|5end_hypothetical_protein_1697755..1697985_NEGATIVE 384 330 284 142 96 NC_002950:PG0662|5end_hypothetical_protein_709867..710097_POSITIVE 376 540 493 203 139 NC_002950:PG1102|5end_hypothetical_protein_1173637..1173867_NEGATIVE 375 110 61 111 54 NC_002950:PG0166|5end_peptidyl-tRNA_hydrolase_188370..188600_NEGATIVE 370 80 39 72 29 NC_002950:PG1252|5end_hypothetical_protein_1329584..1329814_NEGATIVE 369 97 53 198 151 NC_002950:PG2043|5end_conserved_hypothetical_protein_TIGR00486_2142218..2142448_POSITIVE 369 338 292 217 151 NC_002950:PG0322|5end_serine/threonine_transporter_355708..355938_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 426 340 300 49 5 NC_002950:PG0542|3end_hypothetical_protein_595377..595527_NEGATIVE 401 559 511 66 14 NC_002950:PG1417|3end_fumarate_hydratase_class_I,_anaerobic_1503021..1503171_POSITIVE 397 540 492 139 88 NC_002950:PG0745|3end_lactoylglutathione_lyase,_putative_791982..792132_NEGATIVE 391 340 294 69 28 NC_002950:PG0503|3end_dipeptidyl_aminopeptidase_IV_544211..544361_POSITIVE 390 99 58 150 104 NC_002950:PG1715|3end_hypothetical_protein_1803393..1803543_NEGATIVE 370 80 39 59 16 NC_002950:PG1253|3end_DNA_ligase,_NAD-dependent_1329597..1329747_NEGATIVE 361 486 446 128 83 NC_002950:PG0498|3end_S-ribosylhomocysteinase_538527..538677_POSITIVE 358 540 491 151 97 NC_002950:PG0555|3end_DNA-binding_protein,_histone-like_family_611716..611866_NEGATIVE 357 100 51 59 9 NC_002950:PG1465|3end_hypothetical_protein_1542706..1542856_POSITIVE 352 80 38 65 19 NC_002950:PG0715|3end_transporter_768676..768826_NEGATIVE 345 513 473 151 111 NC_002950:PG1105|3end_RNA_polymerase_sigma-54_factor_1175716..1175866_NEGATIVE 343 100 59 104 46 NC_002950:PG1975|3end_hemagglutinin_protein_HagC_2064350..2064500_POSITIVE 343 100 61 134 98 NC_002950:PG1972|3end_hemagglutinin_protein_HagB_2061203..2061353_POSITIVE 343 530 481 149 107 NC_002950:PG1776|3end_dnaJ_protein_1866702..1866852_POSITIVE 340 338 291 142 90 NC_002950:PG0558|3end_purine_nucleoside_phosphorylase_615510..615660_NEGATIVE 337 415 372 137 95 NC_002950:PG0896|3end_beta-galactosidase_960382..960532_POSITIVE 336 77 37 75 32 NC_002950:PG1836|3end_nucleoside_permease_NupG_1929858..1930008_POSITIVE 334 100 58 128 98 NC_002950:PG2040|3end_DNA-binding_protein,_histone-like_family_2138398..2138548_NEGATIVE 334 230 181 56 8 NC_002950:PG0381|3end_cell_volume_regulation_protein_CvrA_411185..411335_NEGATIVE 333 540 491 83 30 NC_002950:PG1355|3end_acyltransferase,_putative_1434762..1434912_NEGATIVE