Origin IGS: tactccctgctttaagaatccggaagaggtacagcacatttgtgtagggagccattcgtgtccgatgaaaattgattgaacatttcgtctctctttatctatctgttttggggatgttttatgatatagtttgataattgcacttattgtaaaagtattatgtcactttatgagtgggtaatctgtaatagtataataatatatgaaatgatggctttgagtggatgtttttcatgcagatcggaaagaattttttgttggacatcaatggcttgagataatctgtttgttagtaaatttcagcgtttttgtgtcggcgagcactgaaaaagtcaattcttagagaagtctgccgatattgttattggtgtcccgtattttttttgcctcacaggtgcccgattccccccccccttttttgatcgaatatctgcactggcaatgtaaccttgtgcacaaagaatgtaataattccacagggcaatcgcatttgaaccgttacacacttatagatctaacgattgctacgctcggttatcaaacaagtacgaattaatgggacctttgcacaataagcaggcacttttgtttattcttcttattgtgtgtcaggcgactatttggtacacgccggatttccacaagtggaaagatagctttccaccggtggaaaataaactttccaccaatggaaaattctttttccaacggtggaaatctacttctctttaatgagtacccctttgagacatccaacgacatgaccgtcaacagcacttgtgctcctccaatcatcgccttgctccccgtgtatgcaccttgtgtgccacgctgtgccgtctgattcacattacgtccatacgagccgatacctcctccggctccaataatctatccggctaccgtcggtacacagtagcagccaacaataccaatgaggagaaactcgctcgaatgaagccgcaaaaccaatataatgcgtcgaccccgggggtagcctgtcagggcgatcgcgtttgaaaatttttagtctctttcctctatgatttgaatctctgacatatggattcgcacttgtttgataattgaatgtagcaatcatgagatctataagtgtgtaacggttcaaatgcgattgtcctgaatcattccactgggatttaggaatatagacgataattaattacctttgcgctctattagggtctcaaaaatcatcgttgaaaggatttgattgtcaaagaaagtataatgagaatcactcttttttctgttatgtgtaatttttaaaataaggcggttttgtcattggggaaattttatttagatcgtagtgaagacgggcggat .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 atccgcccgtcttcactacgatctaaataaaatttccccaatgacaaaaccgccttattttaaaaattacacataacagaaaaaagagtgattctcattatactttctttgacaatcaaatcctttcaacgatgatttttgagaccctaatagagcgcaaaggtaattaattatcgtctatattcctaaatcccagtggaatgattcaggacaatcgcatttgaaccgttacacacttatagatctcatgattgctacattcaattatcaaacaagtgcgaatccatatgtcagagattcaaatcatagaggaaagagactaaaaattttcaaacgcgatcgccctgacaggctacccccggggtcgacgcattatattggttttgcggcttcattcgagcgagtttctcctcattggtattgttggctgctactgtgtaccgacggtagccggatagattattggagccggaggaggtatcggctcgtatggacgtaatgtgaatcagacggcacagcgtggcacacaaggtgcatacacggggagcaaggcgatgattggaggagcacaagtgctgttgacggtcatgtcgttggatgtctcaaaggggtactcattaaagagaagtagatttccaccgttggaaaaagaattttccattggtggaaagtttattttccaccggtggaaagctatctttccacttgtggaaatccggcgtgtaccaaatagtcgcctgacacacaataagaagaataaacaaaagtgcctgcttattgtgcaaaggtcccattaattcgtacttgtttgataaccgagcgtagcaatcgttagatctataagtgtgtaacggttcaaatgcgattgccctgtggaattattacattctttgtgcacaaggttacattgccagtgcagatattcgatcaaaaaaggggggggggaatcgggcacctgtgaggcaaaaaaaatacgggacaccaataacaatatcggcagacttctctaagaattgactttttcagtgctcgccgacacaaaaacgctgaaatttactaacaaacagattatctcaagccattgatgtccaacaaaaaattctttccgatctgcatgaaaaacatccactcaaagccatcatttcatatattattatactattacagattacccactcataaagtgacataatacttttacaataagtgcaattatcaaactatatcataaaacatccccaaaacagatagataaagagagacgaaatgttcaatcaattttcatcggacacgaatggctccctacacaaatgtgctgtacctcttccggattcttaaagcagggagta Mask Tandem Repeat Region ================================================ tactccctgctttaagaatccggaagaggtacagcacatttgtgtagggagccattcgtgtccgatgaaaattgattgaacatttcgtctctctttatctatctgttttggggatgttttatgatatagtttgataattgcacttattgtaaaagtattatgtcactttatgagtgggtaatctgtaatagtataataatatatgaaatgatggctttgagtggatgtttttcatgcagatcggaaagaattttttgttggacatcaatggcttgagataatctgtttgttagtaaatttcagcgtttttgtgtcggcgagcactgaaaaagtcaattcttagagaagtctgccgatattgttattggtgtcccgtattttttttgcctcacaggtgcccgattccccccccccttttttgatcgaatatctgcactggcaatgtaaccttgtgcacaaagaatgtaataattccacagggcaatcgcatttgaaccgttacacacttatagatctaacgattgctacgctcggttatcaaacaagtacgaattaatgggacctttgcacaataagcaggcacttttgtttattcttcttattgtgtgtcaggcgactatttggtacacgccggannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntctttttccaacggtggaaatctacttctctttaatgagtacccctttgagacatccaacgacatgaccgtcaacagcacttgtgctcctccaatcatcgccttgctccccgtgtatgcaccttgtgtgccacgctgtgccgtctgattcacattacgtccatacgagccgatacctcctccggctccaataatctatccggctaccgtcggtacacagtagcagccaacaataccaatgaggagaaactcgctcgaatgaagccgcaaaaccaatataatgcgtcgaccccgggggtagcctgtcagggcgatcgcgtttgaaaatttttagtctctttcctctatgatttgaatctctgacatatggattcgcacttgtttgataattgaatgtagcaatcatgagatctataagtgtgtaacggttcaaatgcgattgtcctgaatcattccactgggatttaggaatatagacgataattaattacctttgcgctctattagggtctcaaaaatcatcgttgaaaggatttgattgtcaaagaaagtataatgagaatcactcttttttctgttatgtgtaatttttaaaataaggcggttttgtcattggggaaattttatttagatcgtagtgaagacgggcggat Find is-nt database================================================ Query_seq: PG0104:PG0106|PG0104:PG0106:DNA topoisomerase III:glycosyl transferase, group 4 family protein:->->:127509..128857 1349 tactccctgctttaagaatccggaagaggtacagcacatttgtgtagggagccattcgtgtccgatgaaaattgattgaacatttcgtctctctttatctatctgttttggggatgttttatgatatagtttgataattgcacttattgtaaaagtattatgtcactttatgagtgggtaatctgtaatagtataataatatatgaaatgatggctttgagtggatgtttttcatgcagatcggaaagaattttttgttggacatcaatggcttgagataatctgtttgttagtaaatttcagcgtttttgtgtcggcgagcactgaaaaagtcaattcttagagaagtctgccgatattgttattggtgtcccgtattttttttgcctcacaggtgcccgattccccccccccttttttgatcgaatatctgcactggcaatgtaaccttgtgcacaaagaatgtaataattccacagggcaatcgcatttgaaccgttacacacttatagatctaacgattgctacgctcggttatcaaacaagtacgaattaatgggacctttgcacaataagcaggcacttttgtttattcttcttattgtgtgtcaggcgactatttggtacacgccggatttccacaagtggaaagatagctttccaccggtggaaaataaactttccaccaatggaaaattctttttccaacggtggaaatctacttctctttaatgagtacccctttgagacatccaacgacatgaccgtcaacagcacttgtgctcctccaatcatcgccttgctccccgtgtatgcaccttgtgtgccacgctgtgccgtctgattcacattacgtccatacgagccgatacctcctccggctccaataatctatccggctaccgtcggtacacagtagcagccaacaataccaatgaggagaaactcgctcgaatgaagccgcaaaaccaatataatgcgtcgaccccgggggtagcctgtcagggcgatcgcgtttgaaaatttttagtctctttcctctatgatttgaatctctgacatatggattcgcacttgtttgataattgaatgtagcaatcatgagatctataagtgtgtaacggttcaaatgcgattgtcctgaatcattccactgggatttaggaatatagacgataattaattacctttgcgctctattagggtctcaaaaatcatcgttgaaaggatttgattgtcaaagaaagtataatgagaatcactcttttttctgttatgtgtaatttttaaaataaggcggttttgtcattggggaaattttatttagatcgtagtgaagacgggcggat Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PG0104:PG0106|PG0104:PG0106:DNA topoisomerase III:glycosyl transferase, group 4 family protein:->->:127509..128857 1349 tactccctgctttaagaatccggaagaggtacagcacatttgtgtagggagccattcgtgtccgatgaaaattgattgaacatttcgtctctctttatctatctgttttggggatgttttatgatatagtttgataattgcacttattgtaaaagtattatgtcactttatgagtgggtaatctgtaatagtataataatatatgaaatgatggctttgagtggatgtttttcatgcagatcggaaagaattttttgttggacatcaatggcttgagataatctgtttgttagtaaatttcagcgtttttgtgtcggcgagcactgaaaaagtcaattcttagagaagtctgccgatattgttattggtgtcccgtattttttttgcctcacaggtgcccgattccccccccccttttttgatcgaatatctgcactggcaatgtaaccttgtgcacaaagaatgtaataattccacagggcaatcgcatttgaaccgttacacacttatagatctaacgattgctacgctcggttatcaaacaagtacgaattaatgggacctttgcacaataagcaggcacttttgtttattcttcttattgtgtgtcaggcgactatttggtacacgccggatttccacaagtggaaagatagctttccaccggtggaaaataaactttccaccaatggaaaattctttttccaacggtggaaatctacttctctttaatgagtacccctttgagacatccaacgacatgaccgtcaacagcacttgtgctcctccaatcatcgccttgctccccgtgtatgcaccttgtgtgccacgctgtgccgtctgattcacattacgtccatacgagccgatacctcctccggctccaataatctatccggctaccgtcggtacacagtagcagccaacaataccaatgaggagaaactcgctcgaatgaagccgcaaaaccaatataatgcgtcgaccccgggggtagcctgtcagggcgatcgcgtttgaaaatttttagtctctttcctctatgatttgaatctctgacatatggattcgcacttgtttgataattgaatgtagcaatcatgagatctataagtgtgtaacggttcaaatgcgattgtcctgaatcattccactgggatttaggaatatagacgataattaattacctttgcgctctattagggtctcaaaaatcatcgttgaaaggatttgattgtcaaagaaagtataatgagaatcactcttttttctgttatgtgtaatttttaaaataaggcggttttgtcattggggaaattttatttagatcgtagtgaagacgggcggat Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PG0104:PG0106|PG0104:PG0106:DNA topoisomerase III:glycosyl transferase, group 4 family protein:->->:127509..128857 1349 tactccctgctttaagaatccggaagaggtacagcacatttgtgtagggagccattcgtgtccgatgaaaattgattgaacatttcgtctctctttatctatctgttttggggatgttttatgatatagtttgataattgcacttattgtaaaagtattatgtcactttatgagtgggtaatctgtaatagtataataatatatgaaatgatggctttgagtggatgtttttcatgcagatcggaaagaattttttgttggacatcaatggcttgagataatctgtttgttagtaaatttcagcgtttttgtgtcggcgagcactgaaaaagtcaattcttagagaagtctgccgatattgttattggtgtcccgtattttttttgcctcacaggtgcccgattccccccccccttttttgatcgaatatctgcactggcaatgtaaccttgtgcacaaagaatgtaataattccacagggcaatcgcatttgaaccgttacacacttatagatctaacgattgctacgctcggttatcaaacaagtacgaattaatgggacctttgcacaataagcaggcacttttgtttattcttcttattgtgtgtcaggcgactatttggtacacgccggatttccacaagtggaaagatagctttccaccggtggaaaataaactttccaccaatggaaaattctttttccaacggtggaaatctacttctctttaatgagtacccctttgagacatccaacgacatgaccgtcaacagcacttgtgctcctccaatcatcgccttgctccccgtgtatgcaccttgtgtgccacgctgtgccgtctgattcacattacgtccatacgagccgatacctcctccggctccaataatctatccggctaccgtcggtacacagtagcagccaacaataccaatgaggagaaactcgctcgaatgaagccgcaaaaccaatataatgcgtcgaccccgggggtagcctgtcagggcgatcgcgtttgaaaatttttagtctctttcctctatgatttgaatctctgacatatggattcgcacttgtttgataattgaatgtagcaatcatgagatctataagtgtgtaacggttcaaatgcgattgtcctgaatcattccactgggatttaggaatatagacgataattaattacctttgcgctctattagggtctcaaaaatcatcgttgaaaggatttgattgtcaaagaaagtataatgagaatcactcttttttctgttatgtgtaatttttaaaataaggcggttttgtcattggggaaattttatttagatcgtagtgaagacgggcggat Intra-Species Hit: Count: 0 Inter-species Hit: Count: 7 Min: 556 Max: 1111 Len: 556 Subject: UniRef90_Q7MTZ0 Cluster: Hypothetical protein; n=1; Porphyromonas gingivalis|Rep: Hypothetical protein - Porphyromonas gingivalis (Bacteroides gingivalis) HSP 1 e-value: 4.0E-47 bit: 191.0 Len: 387 Query Start:556 Query End:942 Subject Strand: null Subject Start: 6 Subject End: 133 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... L L I G I V G C Y C V P T V X X X X X X X X X X X G S Y G R N V N Q T A Q R G T Q G A Y T G S K A M I G G A Q V L L T V M S L D V S K G Y S L K R S R F P P L E K E F S I G G K F I F H R W K A I F P L V E I R R V P N S R L T H N K K N K Q K C L L I V Q R S H ....................................................................................................................................................................................................................................................................................................................................................................................................................... ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... L L I G I I G C Y C V P M V A G W I I G A G G G I G S Y G R N V N Q T A Q R G T - G A Y T G S K A M I G G A Q V L L P V M S F D V S K G H S L K G S K F P P L E K E V S T S G K F I F Q W W K D N F P L V E I R H V P N S R L T H N K K N E Q K C L L I V Q S S H ....................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_Q7MV49 Cluster: Hypothetical protein; n=1; Porphyromonas gingivalis|Rep: Hypothetical protein - Porphyromonas gingivalis (Bacteroides gingivalis) HSP 1 e-value: 4.0E-42 bit: 175.0 Len: 417 Query Start:556 Query End:972 Subject Strand: null Subject Start: 1 Subject End: 117 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... L V L R L H S S E F L L I G I V G C Y C V P T V X X X X X X X X X X X G S Y G R N V N Q T A Q R G T Q G A Y T G S K A M I G G A Q V L L T V M S L D V S K G Y S L K R S R F P P L E K E F S I G G K F I F H R W K A I F P L V E I R R V P N S R L T H N K K N K Q K C L L I V Q R S H ......................................................................................................................................................................................................................................................................................................................................................................................... ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M V L R L H S S E F L L I G I V G C Y C V P T V A E W I I G A G G G I G S Y G C N V N Q T A Q R G T Q C A Y T G S K A M I G G A Q V L L P V M S L D V S K G H S L K G S K F P P - - - - - - - - - - - - - - - - - - - - - - V E I R R V P N S R L T H N K K N E Q K C L L I V Q R P H ......................................................................................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_Q7MSZ0 Cluster: Hypothetical protein; n=2; Porphyromonas gingivalis|Rep: Hypothetical protein - Porphyromonas gingivalis (Bacteroides gingivalis) HSP 1 e-value: 1.0E-39 bit: 166.0 Len: 417 Query Start:556 Query End:972 Subject Strand: null Subject Start: 1 Subject End: 117 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... L V L R L H S S E F L L I G I V G C Y C V P T V X X X X X X X X X X X G S Y G R N V N Q T A Q R G T Q G A Y T G S K A M I G G A Q V L L T V M S L D V S K G Y S L K R S R F P P L E K E F S I G G K F I F H R W K A I F P L V E I R R V P N S R L T H N K K N K Q K C L L I V Q R S H ......................................................................................................................................................................................................................................................................................................................................................................................... ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M V L R F H S S E F L L I G I A G Y Y C V P M V A G W I I G A G G G I G S Y G R N V N Q T V Q R G A Q G A Y T G S K A M V G E A Q V L L P V M S F D V S K G H S L K G S R - - - - - - - - - - - - - - - - - - - - - - F P L V E I R R V P N S R L T H N K K N K Q K C L L V V Q R S H ......................................................................................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_Q7MVZ0 Cluster: Hypothetical protein; n=1; Porphyromonas gingivalis|Rep: Hypothetical protein - Porphyromonas gingivalis (Bacteroides gingivalis) HSP 1 e-value: 2.0E-39 bit: 166.0 Len: 309 Query Start:556 Query End:864 Subject Strand: null Subject Start: 99 Subject End: 201 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... S Y G R N V N Q T A Q R G T Q G A Y T G S K A M I G G A Q V L L T V M S L D V S K G Y S L K R S R F P P L E K E F S I G G K F I F H R W K A I F P L V E I R R V P N S R L T H N K K N K Q K C L L I V Q R S H ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... S Y G R N V N Q T P Q R G T Q S A Y T G S E A M V G G A Q V L L P V M S L N V S K G H S L K G S K F P L V E K E V S T G G K F I F H G R K D I F P L V E N R R V P N S R L T H N K K N K Q K R L L I V Q R S H ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 3.0E-18 bit: 95.9 Len: 456 Query Start:656 Query End:1111 Subject Strand: null Subject Start: 22 Subject End: 175 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... I D L M I A T F N Y Q T S A N P Y V R D S N H R G K R L K I F K R D R P D R L P P G S T H Y I G F A A S F E R V S P H W Y C W L L L C T D - - - - - - - - - G S R I D Y W S R R R Y R L V W T * C E S D G T A W H T R C I H G E Q G D D W R S T S A V D G H V V G C L K G V L I K E K * I S T V G K R I F H W W K V Y F P P V E S .............................................................................................................................................................................................................................................. ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... L K L M I A T L S Y Q T S T N S F V R D S N Y R G K R L K I F K R N R P D H L S D M G S M V L - - - - - - Y R L P P H W Y C W L L L C T D A V A G W I I G A G G G I G S Y G R N V N Q T P Q R G T Q S A Y T G S E A M V G G A Q V L L P V M S L N V S K G H S L K G S K F P L V - E K E V S T G G K F I F H G R K D I F P L V E N .............................................................................................................................................................................................................................................. Subject: UniRef90_Q7MVK1 Cluster: Hypothetical protein; n=1; Porphyromonas gingivalis|Rep: Hypothetical protein - Porphyromonas gingivalis (Bacteroides gingivalis) HSP 1 e-value: 3.0E-25 bit: 119.0 Len: 270 Query Start:703 Query End:972 Subject Strand: null Subject Start: 1 Subject End: 90 .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. L V L R L H S S E F L L I G I V G C Y C V P T V X X X X X X X X X X X G S Y G R N V N Q T A Q R G T Q G A Y T G S K A M I G G A Q V L L T V M S L D V S K G Y S L K R S R F P P L E ......................................................................................................................................................................................................................................................................................................................................................................................... .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M V L R F H S S E F L L I G I A G Y Y C V P K V A G W I I G A G G G I G S Y G R N V N Q T V Q R G A Q G A Y T G S K A M V G E A Q V L L P V M S F G V S K G H S L K R R R F P Q V D ......................................................................................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_Q7MUW4 Cluster: Hypothetical protein; n=1; Porphyromonas gingivalis|Rep: Hypothetical protein - Porphyromonas gingivalis (Bacteroides gingivalis) HSP 1 e-value: 3.0E-25 bit: 119.0 Len: 294 Query Start:679 Query End:972 Subject Strand: null Subject Start: 1 Subject End: 91 ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... L V L R L H S S E F L L I G I V G C Y C V P T V X X X X X X X X X X X G S Y G R N V N Q T A Q R G T Q G A Y T G S K A M I G G A Q V L L T V M S L D V S K G Y S L K R S R F P P L E K E F S I G G K ......................................................................................................................................................................................................................................................................................................................................................................................... ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M V L R L H S S K F L L I G I V G C Y C V P T V A G W I I G A G G G I G S Y E R N V N Q T A Q R G T Q G A Y T G S K A M G G G A Q V L L P V M S F D V S K G A L I K - - - - - - - G E Q I S L G G K ......................................................................................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_Q7MUT4 Cluster: Hypothetical protein; n=1; Porphyromonas gingivalis|Rep: Hypothetical protein - Porphyromonas gingivalis (Bacteroides gingivalis) HSP 1 e-value: 2.0E-13 bit: 80.1 Len: 147 Query Start:703 Query End:849 Subject Strand: null Subject Start: 1 Subject End: 49 .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. V N Q T A Q R G T Q G A Y T G S K A M I G G A Q V L L T V M S L D V S K G Y S L K R S R F P P L E .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M N Q T A Q R G A Q G A Y T R S K A M V G E A Q V L L P V M S F D V S K G H S L K G S R F P P L E .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... tactccctgctttaagaatccggaagaggtacagcacatttgtgtagggagccattcgtgtccgatgaaaattgattgaacatttcgtctctctttatctatctgttttggggatgttttatgatatagtttgataattgcacttattgtaaaagtattatgtcactttatgagtgggtaatctgtaatagtataataatatatgaaatgatggctttgagtggatgtttttcatgcagatcggaaagaattttttgttggacatcaatggcttgagataatctgtttgttagtaaatttcagcgtttttgtgtcggcgagcactgaaaaagtcaattcttagagaagtctgccgatattgttattggtgtcccgtattttttttgcctcacaggtgcccgattccccccccccttttttgatcgaatatctgcactggcaatgtaaccttgtgcacaaagaatgtaataattccacagggcaatcgcatttgaaccgttacacacttatagatctaacgattgctacgctcggttatcaaacaagtacgaattannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagtgtgtaacggttcaaatgcgattgtcctgaatcattccactgggatttaggaatatagacgataattaattacctttgcgctctattagggtctcaaaaatcatcgttgaaaggatttgattgtcaaagaaagtataatgagaatcactcttttttctgttatgtgtaatttttaaaataaggcggttttgtcattggggaaattttatttagatcgtagtgaagacgggcggat Predict ORF larger than 30AA ================================================ Protein_Len: 39 Strand: + Start: 157 End: 273 ............................................................................................................................................................ M M S L Y E W V I C N S I I I Y E M M A L S G C F S C R S E R I F C W T S M A .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 40 Strand: + Start: 221 End: 340 ............................................................................................................................................................................................................................ M D V F H A D R K E F F V G H Q W L E I I C L L V N F S V F V S A S T E K V N S ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 41 Strand: + Start: 297 End: 419 ........................................................................................................................................................................................................................................................................................................ M S A F L C R R A L K K S I L R E V C R Y C Y W C P V F F L P H R C P I P P P L F .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 60 Strand: + Start: 350 End: 553 ............................................................................................................................................................................................................................................................................................................................................................. M P I L L L V S R I F F A S Q V P D S P P P F L I E Y L H W Q C N L V H K E C N N S T G Q S H L N R Y T L I D L T I A T ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 60 Strand: + Start: 484 End: 729 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M A F E P L H T Y R S N D C Y A R L S N K Y E L M G P L H N K Q A L L F I L L I V C Q A T I W Y T P D F H K W K D S F P ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 60 Strand: + Start: 572 End: 841 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M S R H F C L F F L L C V R R L F G T R R I S T S G K I A F H R W K I N F P P M E N S F S N G G N L L L F N E Y P F E T ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 36 Strand: + Start: 780 End: 887 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M L L Q S S P C S P C M H L V C H A V P S D S H Y V H T S R Y L L R L Q .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 60 Strand: + Start: 751 End: 1017 .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M Q R H D R Q Q H L C S S N H R L A P R V C T L C A T L C R L I H I T S I R A D T S S G S N N L S G Y R R Y T V A A N N ............................................................................................................................................................................................................................................................................................................................................ Protein_Len: 30 Strand: + Start: 1052 End: 1141 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M S D I W I R T C L I I E C S N H E I Y K C V T V Q M R L S ................................................................................................................................................................................................................ Protein_Len: 35 Strand: + Start: 1176 End: 1280 ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M I N Y L C A L L G S Q K S S L K G F D C Q R K Y N E N H S F F C Y V ..................................................................... Protein_Len: 37 Strand: - Start: 1183 End: 1293 .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. N G K R E I L T E F I M T S L I Q N D F F T Y H S D S K K R N H T I K L M ........................................................ Protein_Len: 31 Strand: - Start: 1044 End: 1136 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... S K F R Q C I S E C K N S L Q I Y C D H S R Y T H L P E F A M ..................................................................................................................................................................................................................... Protein_Len: 39 Strand: - Start: 895 End: 1011 .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. G A V T P V C Y C G V I G I L L F E S S H L R L V L I I R R G R P Y G T L A M .................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 60 Strand: - Start: 854 End: 1180 ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... D P R D R K F I K L R K G R H N S D R V Y P N A S T Q Y N F T A I M L D I L T Y R N L H S Q G S D N W Q S K P I Y V I M ......................................................................................................................................................................... Protein_Len: 31 Strand: - Start: 722 End: 814 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. K E K I L V G K L C G V V H G D V A S T S R W D D G Q E G H M ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 33 Strand: - Start: 620 End: 718 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... K T C A P N G C T S L Y S E V P P F Y V K W W H F I R K G V T S M ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: - Start: 556 End: 891 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... P F R S R K L S Y G K S V D L S M V T L L V Q A G G I M A K S G T Y A G Q T G R Q A T Q N V N R G Y S G I G G G A G I M .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 41 Strand: - Start: 392 End: 514 ....................................................................................................................................................................................................................................................................................................................................................................................................... L H G I G G G R K Q D F I Q V P L T V K H V F F T I I G C P L R M Q V T V C K Y M ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 45 Strand: - Start: 343 End: 477 ...................................................................................................................................................................................................................................................................................................................................................... L L R G I N N N T D R I K K A E C T G S E G G G K K I S Y R C Q C H L R T C L S H L L E M ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 57 Strand: - Start: 336 End: 506 ............................................................................................................................................................................................................................................................................................................................................... N K S F D A S I T I P T G Y K K Q R V P A R N G G G K K S R I D A S A I Y G Q A C L I Y Y N W L A I A N S G N C M ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 33 Strand: - Start: 171 End: 269 .......................................................................................................................................................................... S H T I Q L L I I I Y S I I A K L P H K E H L D S L I K Q Q V D M ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 36 Strand: - Start: 161 End: 268 ................................................................................................................................................................ T V K H T P L R Y Y Y L L I H F S P K S H I N K M C I P F F K K N S M M ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 49 Strand: - Start: 1 End: 147 V G Q K L F G S S T C C M Q T P L W E H G I F I S Q V N R R E K D I Q K P S T K H Y L K I I A S M .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. tactccctgctttaagaatccggaagaggtacagcacatttgtgtagggagccattcgtgtccgatgaaaattgattgaacatttcgtctctctttatctatctgttttggggatgttttatgatatagtttgataattgcacttattgtaaaagtattatgtcactttatgagtgggtaatctgtaatagtataataatatatgaaatgatggctttgagtggatgtttttcatgcagatcggaaagaattttttgttggacatcaatggcttgagataatctgtttgttagtaaatttcagcgtttttgtgtcggcgagcactgaaaaagtcaattcttagagaagtctgccgatattgttattggtgtcccgtattttttttgcctcacaggtgcccgattccccccccccttttttgatcgaatatctgcactggcaatgtaaccttgtgcacaaagaatgtaataattccacagggcaatcgcatttgaaccgttacacacttatagatctaacgattgctacgctcggttatcaaacaagtacgaattannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagtgtgtaacggttcaaatgcgattgtcctgaatcattccactgggatttaggaatatagacgataattaattacctttgcgctctattagggtctcaaaaatcatcgttgaaaggatttgattgtcaaagaaagtataatgagaatcactcttttttctgttatgtgtaatttttaaaataaggcggttttgtcattggggaaattttatttagatcgtagtgaagacgggcggat Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ PromScan Matrix: RpoN Strand: - Score: 86 Start: 814 End: 830 .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCACACAAGGTGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... tactccctgctttaagaatccggaagaggtacagcacatttgtgtagggagccattcgtgtccgatgaaaattgattgaacatttcgtctctctttatctatctgttttggggatgttttatgatatagtttgataattgcacttattgtaaaagtattatgtcactttatgagtgggtaatctgtaatagtataataatatatgaaatgatggctttgagtggatgtttttcatgcagatcggaaagaattttttgttggacatcaatggcttgagataatctgtttgttagtaaatttcagcgtttttgtgtcggcgagcactgaaaaagtcaattcttagagaagtctgccgatattgttattggtgtcccgtattttttttgcctcacaggtgcccgattccccccccccttttttgatcgaatatctgcactggcaatgtaaccttgtgcacaaagaatgtaataattccacagggcaatcgcatttgaaccgttacacacttatagatctaacgattgctacgctcggttatcaaacaagtacgaattannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagtgtgtaacggttcaaatgcgattgtcctgaatcattccactgggatttaggaatatagacgataattaattacctttgcgctctattagggtctcaaaaatcatcgttgaaaggatttgattgtcaaagaaagtataatgagaatcactcttttttctgttatgtgtaatttttaaaataaggcggttttgtcattggggaaattttatttagatcgtagtgaagacgggcggat Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 80 HP_score: -10.8 Tail_Score: -3.31144 Start: 645 End: 664 Full_Region: gtttattttccaccg gtggaaag ctat ctttccac ttgtggaaatccggc ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gtggaaagctatctttccac............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. TransTerm Strand: + Conf: 62 HP_score: -2.6 Tail_Score: -4.57569 Start: 654 End: 699 Full_Region: CCACAAGTGGAAAGA TAGCTTTCCACCGGTGGAAA ATAAAC TTTCCACCAATGGAAAATTC TTTTTCCAACGGTGG .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCTTTCCACCGGTGGAAAATAAACTTTCCACCAATGGAAAATTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 77 HP_score: -10.3 Tail_Score: -3.2789 Start: 656 End: 697 Full_Region: accgttggaaaaaga attttccattggtggaaag ttta ttttccaccggtggaaagc tatctttccacttgt ...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................attttccattggtggaaagtttattttccaccggtggaaagc............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ TransTerm Strand: - Conf: 91 HP_score: -13.8 Tail_Score: -2.56011 Start: 657 End: 696 Full_Region: ccgttggaaaaagaa ttttccattggtggaaag ttta ttttccaccggtggaaag ctatctttccacttg ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ttttccattggtggaaagtttattttccaccggtggaaag............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. TransTerm Strand: + Conf: 74 HP_score: -6.5 Tail_Score: -4.40561 Start: 657 End: 696 Full_Region: CAAGTGGAAAGATAG CTTTCCACCGGTGGAAA ATAAAC TTTCCACCAATGGAAAA TTCTTTTTCCAACGG ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTCCACCGGTGGAAAATAAACTTTCCACCAATGGAAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. TransTerm Strand: + Conf: 75 HP_score: -10.0 Tail_Score: -3.23855 Start: 658 End: 695 Full_Region: AAGTGGAAAGATAGC TTTCCACCGGTGGAAA ATAAAC TTTCCACCAATGGAAA ATTCTTTTTCCAACG .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCACCGGTGGAAAATAAACTTTCCACCAATGGAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. TransTerm Strand: - Conf: 93 HP_score: -11.6 Tail_Score: -4.64861 Start: 679 End: 718 Full_Region: attaaagagaagtag atttccaccgttggaaaa agaa ttttccattggtggaaag tttattttccaccgg ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atttccaccgttggaaaaagaattttccattggtggaaag....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 100 HP_score: -15.1 Tail_Score: -3.38435 Start: 680 End: 717 Full_Region: ttaaagagaagtaga tttccaccgttggaaaa agaa ttttccattggtggaaa gtttattttccaccg .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tttccaccgttggaaaaagaattttccattggtggaaa........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ TransTerm Strand: + Conf: 91 HP_score: -12.9 Tail_Score: -3.04334 Start: 680 End: 717 Full_Region: CGGTGGAAAATAAAC TTTCCACCAATGGAAAA TTCT TTTTCCAACGGTGGAAA TCTACTTCTCTTTAA .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCACCAATGGAAAATTCTTTTTCCAACGGTGGAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Find igs database================================================ Query_seq: PG0104:PG0106|PG0104:PG0106:DNA topoisomerase III:glycosyl transferase, group 4 family protein:->->:127509..128857 1349 tactccctgctttaagaatccggaagaggtacagcacatttgtgtagggagccattcgtgtccgatgaaaattgattgaacatttcgtctctctttatctatctgttttggggatgttttatgatatagtttgataattgcacttattgtaaaagtattatgtcactttatgagtgggtaatctgtaatagtataataatatatgaaatgatggctttgagtggatgtttttcatgcagatcggaaagaattttttgttggacatcaatggcttgagataatctgtttgttagtaaatttcagcgtttttgtgtcggcgagcactgaaaaagtcaattcttagagaagtctgccgatattgttattggtgtcccgtattttttttgcctcacaggtgcccgattccccccccccttttttgatcgaatatctgcactggcaatgtaaccttgtgcacaaagaatgtaataattccacagggcaatcgcatttgaaccgttacacacttatagatctaacgattgctacgctcggttatcaaacaagtacgaattannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagtgtgtaacggttcaaatgcgattgtcctgaatcattccactgggatttaggaatatagacgataattaattacctttgcgctctattagggtctcaaaaatcatcgttgaaaggatttgattgtcaaagaaagtataatgagaatcactcttttttctgttatgtgtaatttttaaaataaggcggttttgtcattggggaaattttatttagatcgtagtgaagacgggcggat Intra-Species Hit: Count: 1 Min: 1 Max: 1349 Len: 1349 Subject: NC_002950_PG0104_PG0106|DNA topoisomerase III:glycosyl transferase, group 4 family protein|POSITIVE:POSITIVE|[127509,128857]|1349 HSP 1 e-value: 0.0 bit: 993.0 Len: 555 Query Start:1 Query End:555 Subject Strand: POSITIVE Subject Start: 1 Subject End: 555 tactccctgctttaagaatccggaagaggtacagcacatttgtgtagggagccattcgtgtccgatgaaaattgattgaacatttcgtctctctttatctatctgttttggggatgttttatgatatagtttgataattgcacttattgtaaaagtattatgtcactttatgagtgggtaatctgtaatagtataataatatatgaaatgatggctttgagtggatgtttttcatgcagatcggaaagaattttttgttggacatcaatggcttgagataatctgtttgttagtaaatttcagcgtttttgtgtcggcgagcactgaaaaagtcaattcttagagaagtctgccgatattgttattggtgtcccgtannnnnnnngcctcacaggtgcccgattnnnnnnnnnnttttttgatcgaatatctgcactggcaatgtaaccttgtgcacaaagaatgtaataattccacagggcaatcgcatttgaaccgttacacacttatagatctaacgattgctacgctcggttatcaaacaagtacgaatta.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... tactccctgctttaagaatccggaagaggtacagcacatttgtgtagggagccattcgtgtccgatgaaaattgattgaacatttcgtctctctttatctatctgttttggggatgttttatgatatagtttgataattgcacttattgtaaaagtattatgtcactttatgagtgggtaatctgtaatagtataataatatatgaaatgatggctttgagtggatgtttttcatgcagatcggaaagaattttttgttggacatcaatggcttgagataatctgtttgttagtaaatttcagcgtttttgtgtcggcgagcactgaaaaagtcaattcttagagaagtctgccgatattgttattggtgtcccgtattttttttgcctcacaggtgcccgattccccccccccttttttgatcgaatatctgcactggcaatgtaaccttgtgcacaaagaatgtaataattccacagggcaatcgcatttgaaccgttacacacttatagatctaacgattgctacgctcggttatcaaacaagtacgaatta.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 1.0E-131 bit: 472.0 Len: 238 Query Start:1112 Query End:1349 Subject Strand: POSITIVE Subject Start: 1112 Subject End: 1349 .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................aagtgtgtaacggttcaaatgcgattgtcctgaatcattccactgggatttaggaatatagacgataattaattacctttgcgctctattagggtctcaaaaatcatcgttgaaaggatttgattgtcaaagaaagtataatgagaatcactcttttttctgttatgtgtaatttttaaaataaggcggttttgtcattggggaaattttatttagatcgtagtgaagacgggcggat .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................aagtgtgtaacggttcaaatgcgattgtcctgaatcattccactgggatttaggaatatagacgataattaattacctttgcgctctattagggtctcaaaaatcatcgttgaaaggatttgattgtcaaagaaagtataatgagaatcactcttttttctgttatgtgtaatttttaaaataaggcggttttgtcattggggaaattttatttagatcgtagtgaagacgggcggat HSP 3 e-value: 2.0E-16 bit: 89.7 Len: 77 Query Start:477 Query End:553 Subject Strand: NEGATIVE Subject Start: 1067 Subject End: 1143 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cagggcaatcgcatttgaaccgttacacacttatagatctaacgattgctacgctcggttatcaaacaagtacgaat............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................caggacaatcgcatttgaaccgttacacacttatagatctcatgattgctacattcaattatcaaacaagtgcgaat............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ HSP 4 e-value: 3.0E-6 bit: 56.0 Len: 32 Query Start:1112 Query End:1143 Subject Strand: NEGATIVE Subject Start: 477 Subject End: 508 .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................aagtgtgtaacggttcaaatgcgattgtcctg.............................................................................................................................................................................................................. .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................aagtgtgtaacggttcaaatgcgattgccctg.............................................................................................................................................................................................................. Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UACUCCCUGCUUUAAGAAUCCGGAAGAGGUACAGCACAUUUGUGUAGGGAGCCAUUCGUGUCCGAUGAAAAUUGAUUGAACAUUUCGUCUCUCUUUAUCUAUCUGUUUUGGGGAUGUUUUAUGAUAUAGUUUGAUAAUUGCACUUAUUGUAAAAGUAUUAUGUCACUUUAUGAGUGGGUAAUCUGUAAUAGUAUAAUAAUAUAUGAAAUGAUGGCUUUGAGUGGAUGUUUUUCAUGCAGAUCGGAAAGAAUUUUUUGUUGGACAUCAAUGGCUUGAGAUAAUCUGUUUGUUAGUAAAUUUCAGCGUUUUUGUGUCGGCGAGCACUGAAAAAGUCAAUUCUUAGAGAAGUCUGCCGAUAUUGUUAUUGGUGUCCCGUAUUUUUUUUGCCUCACAGGUGCCCGAUUCCCCCCCCCCUUUUUUGAUCGAAUAUCUGCACUGGCAAUGUAACCUUGUGCACAAAGAAUGUAAUAAUUCCACAGGGCAAUCGCAUUUGAACCGUUACACACUUAUAGAUCUAACGAUUGCUACGCUCGGUUAUCAAACAAGUACGAAUUAAUGGGACCUUUGCACAAUAAGCAGGCACUUUUGUUUAUUCUUCUUAUUGUGUGUCAGGCGACUAUUUGGUACACGCCGGAUUUCCACAAGUGGAAAGAUAGCUUUCCACCGGUGGAAAAUAAACUUUCCACCAAUGGAAAAUUCUUUUUCCAACGGUGGAAAUCUACUUCUCUUUAAUGAGUACCCCUUUGAGACAUCCAACGACAUGACCGUCAACAGCACUUGUGCUCCUCCAAUCAUCGCCUUGCUCCCCGUGUAUGCACCUUGUGUGCCACGCUGUGCCGUCUGAUUCACAUUACGUCCAUACGAGCCGAUACCUCCUCCGGCUCCAAUAAUCUAUCCGGCUACCGUCGGUACACAGUAGCAGCCAACAAUACCAAUGAGGAGAAACUCGCUCGAAUGAAGCCGCAAAACCAAUAUAAUGCGUCGACCCCGGGGGUAGCCUGUCAGGGCGAUCGCGUUUGAAAAUUUUUAGUCUCUUUCCUCUAUGAUUUGAAUCUCUGACAUAUGGAUUCGCACUUGUUUGAUAAUUGAAUGUAGCAAUCAUGAGAUCUAUAAGUGUGUAACGGUUCAAAUGCGAUUGUCCUGAAUCAUUCCACUGGGAUUUAGGAAUAUAGACGAUAAUUAAUUACCUUUGCGCUCUAUUAGGGUCUCAAAAAUCAUCGUUGAAAGGAUUUGAUUGUCAAAGAAAGUAUAAUGAGAAUCACUCUUUUUUCUGUUAUGUGUAAUUUUUAAAAUAAGGCGGUUUUGUCAUUGGGGAAAUUUUAUUUAGAUCGUAGUGAAGACGGGCGGAU ..((((((((.......((((....).)))...(((....)))))))))))...((((....((((....))))..))))...(((((((.((((((.(((........((((........(((((((((.......(((((.....)))))....)))))))))......(((((((((.(((((....(((((....)))))........(((.(((.(((((.....))))).)))...(((((((((....((..(((((((((((((.((((((...(((.....)))...))))))........((((((((.((.(((....(((......))).....))))))))))))).))))))))))))))).))))))))))))..)))))))))).)))).....))))......((((((((((((.((.((((((..(..(((((((((((............(((((.((((((((((((((((((((((((((((((((((((((((...((((((((((.(((((((((((((((((.((((((...(((((.(((((...(((((((((....)))))))))(((((((((((.((((.((((((......(((((.....((((((((((...((((((((.((.((((((..((((((((......))))))))..)))))).)).))))))))...)))))))))).....((......))))))).....(((.........(((......)))...((((....)))).)))......))))))((((....(((....))).((((((((((((.((.((((...((((.((.....))......((((((..........))))))....))))....)))))).))).))))))))).)))).......))))))))))))))).....(((.......))).)))))........(((((((((.(((((((.....))))...)))))).))))))............))))).....((...(((....)))...))......)))))).))))))))))))))))).))))))))))...))))))))))))))))))))))))))))))))))))))))......(((....)))....)))))......(((((((((...((((((.((((.....))).).)))...(((....))).)))..)))))))))..((((((......(((.....)))..))))))....)))))..........))))))..)..)))))).)).))).....))))).)))).))))))))).))))))). (-429.50) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AUCCGCCCGUCUUCACUACGAUCUAAAUAAAAUUUCCCCAAUGACAAAACCGCCUUAUUUUAAAAAUUACACAUAACAGAAAAAAGAGUGAUUCUCAUUAUACUUUCUUUGACAAUCAAAUCCUUUCAACGAUGAUUUUUGAGACCCUAAUAGAGCGCAAAGGUAAUUAAUUAUCGUCUAUAUUCCUAAAUCCCAGUGGAAUGAUUCAGGACAAUCGCAUUUGAACCGUUACACACUUAUAGAUCUCAUGAUUGCUACAUUCAAUUAUCAAACAAGUGCGAAUCCAUAUGUCAGAGAUUCAAAUCAUAGAGGAAAGAGACUAAAAAUUUUCAAACGCGAUCGCCCUGACAGGCUACCCCCGGGGUCGACGCAUUAUAUUGGUUUUGCGGCUUCAUUCGAGCGAGUUUCUCCUCAUUGGUAUUGUUGGCUGCUACUGUGUACCGACGGUAGCCGGAUAGAUUAUUGGAGCCGGAGGAGGUAUCGGCUCGUAUGGACGUAAUGUGAAUCAGACGGCACAGCGUGGCACACAAGGUGCAUACACGGGGAGCAAGGCGAUGAUUGGAGGAGCACAAGUGCUGUUGACGGUCAUGUCGUUGGAUGUCUCAAAGGGGUACUCAUUAAAGAGAAGUAGAUUUCCACCGUUGGAAAAAGAAUUUUCCAUUGGUGGAAAGUUUAUUUUCCACCGGUGGAAAGCUAUCUUUCCACUUGUGGAAAUCCGGCGUGUACCAAAUAGUCGCCUGACACACAAUAAGAAGAAUAAACAAAAGUGCCUGCUUAUUGUGCAAAGGUCCCAUUAAUUCGUACUUGUUUGAUAACCGAGCGUAGCAAUCGUUAGAUCUAUAAGUGUGUAACGGUUCAAAUGCGAUUGCCCUGUGGAAUUAUUACAUUCUUUGUGCACAAGGUUACAUUGCCAGUGCAGAUAUUCGAUCAAAAAAGGGGGGGGGGAAUCGGGCACCUGUGAGGCAAAAAAAAUACGGGACACCAAUAACAAUAUCGGCAGACUUCUCUAAGAAUUGACUUUUUCAGUGCUCGCCGACACAAAAACGCUGAAAUUUACUAACAAACAGAUUAUCUCAAGCCAUUGAUGUCCAACAAAAAAUUCUUUCCGAUCUGCAUGAAAAACAUCCACUCAAAGCCAUCAUUUCAUAUAUUAUUAUACUAUUACAGAUUACCCACUCAUAAAGUGACAUAAUACUUUUACAAUAAGUGCAAUUAUCAAACUAUAUCAUAAAACAUCCCCAAAACAGAUAGAUAAAGAGAGACGAAAUGUUCAAUCAAUUUUCAUCGGACACGAAUGGCUCCCUACACAAAUGUGCUGUACCUCUUCCGGAUUCUUAAAGCAGGGAGUA .((((..((((((..((...(((((.........(((((..((.(((....(((((.(((((((((((((.......(((((....((((.....))))....)))))(((.....)))...........).))))))))))))..........(((((((((((((.((((.((.....((((((...........))))))...((((.(((((((((((((((((((((((((((((((((((.(((((((((((.(((..(((((((((((((((((((.....((((...((((((.((((....(((((...........)))))....(((.((((((((...((....)).))))).)))))).......)))).(((((..(((((.(((((((...(((((((.(((((((((((((.(((......))))))))))).)))))..........(....).)))))))..)).))))).))))))))))..)))))).)))).....(.(((((((.....)))).))).).((((.(.((((((((((((.((.((((....)))).))..)))))....((((((((.(((..((((((..(((......)))..((((.(((((((((.(((((((.((((((((((....)))))))))).))))))).))))))))).))))...))).)))..))).))))))))...........)))))))....(((((((((.((.((........))..)).)))))))))....).))))....)))))))))))))))))))..))).))))))))))).))))))))))))))))))))))))))))))))))).)))).)))))))))))...))))))))..)))))....))).)).....(((.....)))......))))).(((((...(((...(((((((((...........((....))..........((((((((..((...(((((((.....((((((((................))))))))..............(((....((((....)))).)))........)))))))...))))))).)))................))).........((((....))))...))))))....)))....(((.(((...(((((((((.......))))...)))))...))).))).........)))))........)))))..)).))))))...((......))........))))........(((((((.(((....))).....((......))...........))))))). (-410.39) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 1046 1010 961 129 80 NC_002950:PG2220|5end_hypothetical_protein_2334935..2335165_POSITIVE 1030 840 791 82 33 NC_002950:PG1398|5end_hypothetical_protein_1480694..1480924_POSITIVE 1013 940 891 59 10 NC_002950:PG1363|5end_hypothetical_protein_1443804..1444034_POSITIVE 989 950 901 69 20 NC_002950:PG1251|5end_hypothetical_protein_1327779..1328009_POSITIVE 973 920 871 54 5 NC_002950:PG1787|5end_hypothetical_protein_1875908..1876138_NEGATIVE 971 1010 961 129 80 NC_002950:PG0499|5end_hypothetical_protein_538709..538939_POSITIVE 960 1010 961 129 80 NC_002950:PG1059|5end_hypothetical_protein_1126495..1126725_NEGATIVE 768 550 501 226 173 NC_002950:PG2221|5end_MiaB-like_tRNA_modifying_enzyme_2335426..2335656_POSITIVE 715 539 491 231 178 NC_002950:PG0801|5end_polyA_polymerase_family_protein_857714..857944_NEGATIVE 715 550 501 223 174 NC_002950:PG0500|5end_queuine_tRNA-ribosyltransferase_539197..539427_POSITIVE 649 520 476 226 181 NC_002950:PG1397|5end_bifunctional_phosphoribosylaminoimidazolecarboxamide_formyltransferase/IMP_cyclohydrolase_1480355..1480585_NEGATIVE 618 610 561 216 160 NC_002950:PG0267|5end_arginyl-tRNA_synthetase_299100..299330_POSITIVE 602 1069 1021 231 183 NC_002950:PG0076|5end_N-acetylmuramoyl-L-alanine_amidase,_family_4_91333..91563_NEGATIVE 524 533 491 231 188 NC_002950:PG2176|5end_ISPg2,_transposase_2284345..2284575_NEGATIVE 523 610 561 227 171 NC_002950:PG1714|5end_pyridoxamine-phosphate_oxidase_1802492..1802722_NEGATIVE 483 554 513 210 163 NC_002950:PG1060|5end_carboxyl-terminal_protease_1126658..1126888_POSITIVE 467 839 792 198 139 NC_002950:PG0335|5end_tRNA_delta(2)-isopentenylpyrophosphate_transferase_370706..370936_NEGATIVE 459 585 544 157 116 NC_002950:PG0035|5end_DNA_polymerase_III,_alpha_subunit_46284..46514_NEGATIVE 455 908 861 200 144 NC_002950:PG1381|5end_ABC_transporter,_permease_protein_1460622..1460852_POSITIVE 440 1016 975 43 4 NC_002950:PG2131|5end_60_kDa_protein_2236174..2236404_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 869 580 531 118 69 NC_002950:PG2220|3end_hypothetical_protein_2335368..2335518_POSITIVE 869 580 531 118 69 NC_002950:PG0499|3end_hypothetical_protein_539142..539292_POSITIVE 814 580 531 118 69 NC_002950:PG1251|3end_hypothetical_protein_1328212..1328362_POSITIVE 797 580 531 118 69 NC_002950:PG0879|3end_hypothetical_protein_941931..942081_NEGATIVE 782 650 601 131 83 NC_002950:PG1398|3end_hypothetical_protein_1480947..1481097_POSITIVE 506 757 713 151 106 NC_002950:PG1363|3end_hypothetical_protein_1444159..1444309_POSITIVE 443 610 561 71 23 NC_002950:PG0197|3end_hypothetical_protein_235941..236091_NEGATIVE 440 850 801 136 74 NC_002950:PG1352|3end_hypothetical_protein_1432737..1432887_NEGATIVE 422 847 801 87 42 NC_002950:PG0607|3end_hypothetical_protein_662994..663144_POSITIVE 420 910 863 132 94 NC_002950:PG1276|3end_DNA-binding_protein,_histone-like_family_1353531..1353681_POSITIVE 420 910 863 132 94 NC_002950:PG0566|3end_DNA-binding_protein,_histone-like_family_622935..623085_NEGATIVE 418 1119 1074 48 3 NC_002950:PG0078|3end_hypothetical_protein_91566..91716_NEGATIVE 410 909 865 137 97 NC_002950:PG1497|3end_DNA-binding_protein,_histone-like_family_1574635..1574785_POSITIVE 398 670 627 48 1 NC_002950:PG1522|3end_mandelate_racemase/muconate_lactonizing_enzyme_family_protein_1599100..1599250_NEGATIVE 395 907 862 83 34 NC_002950:PG2068|3end_glycerol-3-phosphate_cytidylyltransferase_2164872..2165022_POSITIVE 395 1017 978 68 29 NC_002950:PG0647|3end_iron_compound_ABC_transporter,_permease_protein_699079..699229_NEGATIVE 386 640 591 149 100 NC_002950:PG1325|3end_hypothetical_protein_1403504..1403654_NEGATIVE 379 908 863 148 104 NC_002950:PG0361|3end_hypothetical_protein_395481..395631_POSITIVE 375 1037 991 74 34 NC_002950:PG1787|3end_hypothetical_protein_1875441..1875591_NEGATIVE 369 1020 979 119 81 NC_002950:PG1633|3end_galactokinase_1714619..1714769_POSITIVE