Origin IGS: ctttgttactccttagttgtatatgtgcttcagagactcatgggtcaggtctcaaacgcgattattatatgtaagcccacaaatttagcgtttttctcggggagtgtttgttttatgttcgtcttgcgctggtttgcaccctccgagtgctctgcttttcgttctcccaaagattctgtctttcctttccggtttgaaaaattcggtgtatttcgggctgtaaaacgtggtctgagaatatttttgttttggcgcgggagttgaaaaaatctcgcgccggaacgaaaagattctcgcgccatttttttgggattttggtttgagatttgggcgattttcggttcgagtttcggcttgtgcgattggtgcctctgtttttttcgacacccttctctttcccttgtaccctttattccggaccaaccgccaacatttcggtcaaaaaatcttttttgtgcgagggaaaaaacatcttctcatttcttttcgtttgcggtctttttaattgttcttacgcgcgcgaacatattatatatccgctcccttttgtcttctttcttgggagggagtccttttcttcgggggctgttttttttgtcgaaccggttgaaaaaagattttgaaagatttgtctgtaaagaaaaaaggcgtacttttgtgaccgcaaaagcgattgctgcccgattgatagaggaattgttccgccgagcgcgtcgggattctttttttagggggaggatcaggcgacgagctttttcttgagcg .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 cgctcaagaaaaagctcgtcgcctgatcctccccctaaaaaaagaatcccgacgcgctcggcggaacaattcctctatcaatcgggcagcaatcgcttttgcggtcacaaaagtacgccttttttctttacagacaaatctttcaaaatcttttttcaaccggttcgacaaaaaaaacagcccccgaagaaaaggactccctcccaagaaagaagacaaaagggagcggatatataatatgttcgcgcgcgtaagaacaattaaaaagaccgcaaacgaaaagaaatgagaagatgttttttccctcgcacaaaaaagattttttgaccgaaatgttggcggttggtccggaataaagggtacaagggaaagagaagggtgtcgaaaaaaacagaggcaccaatcgcacaagccgaaactcgaaccgaaaatcgcccaaatctcaaaccaaaatcccaaaaaaatggcgcgagaatcttttcgttccggcgcgagattttttcaactcccgcgccaaaacaaaaatattctcagaccacgttttacagcccgaaatacaccgaatttttcaaaccggaaaggaaagacagaatctttgggagaacgaaaagcagagcactcggagggtgcaaaccagcgcaagacgaacataaaacaaacactccccgagaaaaacgctaaatttgtgggcttacatataataatcgcgtttgagacctgacccatgagtctctgaagcacatatacaactaaggagtaacaaag Mask Tandem Repeat Region ================================================ ctttgttactccttagttgtatatgtgcttcagagactcatgggtcaggtctcaaacgcgattattatatgtaagcccacaaatttagcgtttttctcggggagtgtttgttttatgttcgtcttgcgctggtttgcaccctccgagtgctctgcttttcgttctcccaaagattctgtctttcctttccggtttgaaaaattcggtgtatttcgggctgtaaaacgtggtctgagaatatttttgttttggcgcgggagttgaaaaaatctcgcgccggaacgaaaagattctcgcgccatttttttgggattttggtttgagatttgggcgattttcggttcgagtttcggcttgtgcgattggtgcctctgtttttttcgacacccttctctttcccttgtaccctttattccggaccaaccgccaacatttcggtcaaaaaatcttttttgtgcgagggaaaaaacatcttctcatttcttttcgtttgcggtctttttaattgttcttacgcgcgcgaacatattatatatccgctcccttttgtcttctttcttgggagggagtccttttcttcgggggctgttttttttgtcgaaccggttgaaaaaagattttgaaagatttgtctgtaaagaaaaaaggcgtacttttgtgaccgcaaaagcgattgctgcccgattgatagaggaattgttccgccgagcgcgtcgggattctttttttagggggaggatcaggcgacgagctttttcttgagcg Find is-nt database================================================ Query_seq: PG0099:PG0100|PG0099:PG0100:phenylalanyl-tRNA synthetase beta subunit:hypothetical protein:<-<-:118377..119141 765 ctttgttactccttagttgtatatgtgcttcagagactcatgggtcaggtctcaaacgcgattattatatgtaagcccacaaatttagcgtttttctcggggagtgtttgttttatgttcgtcttgcgctggtttgcaccctccgagtgctctgcttttcgttctcccaaagattctgtctttcctttccggtttgaaaaattcggtgtatttcgggctgtaaaacgtggtctgagaatatttttgttttggcgcgggagttgaaaaaatctcgcgccggaacgaaaagattctcgcgccatttttttgggattttggtttgagatttgggcgattttcggttcgagtttcggcttgtgcgattggtgcctctgtttttttcgacacccttctctttcccttgtaccctttattccggaccaaccgccaacatttcggtcaaaaaatcttttttgtgcgagggaaaaaacatcttctcatttcttttcgtttgcggtctttttaattgttcttacgcgcgcgaacatattatatatccgctcccttttgtcttctttcttgggagggagtccttttcttcgggggctgttttttttgtcgaaccggttgaaaaaagattttgaaagatttgtctgtaaagaaaaaaggcgtacttttgtgaccgcaaaagcgattgctgcccgattgatagaggaattgttccgccgagcgcgtcgggattctttttttagggggaggatcaggcgacgagctttttcttgagcg Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PG0099:PG0100|PG0099:PG0100:phenylalanyl-tRNA synthetase beta subunit:hypothetical protein:<-<-:118377..119141 765 ctttgttactccttagttgtatatgtgcttcagagactcatgggtcaggtctcaaacgcgattattatatgtaagcccacaaatttagcgtttttctcggggagtgtttgttttatgttcgtcttgcgctggtttgcaccctccgagtgctctgcttttcgttctcccaaagattctgtctttcctttccggtttgaaaaattcggtgtatttcgggctgtaaaacgtggtctgagaatatttttgttttggcgcgggagttgaaaaaatctcgcgccggaacgaaaagattctcgcgccatttttttgggattttggtttgagatttgggcgattttcggttcgagtttcggcttgtgcgattggtgcctctgtttttttcgacacccttctctttcccttgtaccctttattccggaccaaccgccaacatttcggtcaaaaaatcttttttgtgcgagggaaaaaacatcttctcatttcttttcgtttgcggtctttttaattgttcttacgcgcgcgaacatattatatatccgctcccttttgtcttctttcttgggagggagtccttttcttcgggggctgttttttttgtcgaaccggttgaaaaaagattttgaaagatttgtctgtaaagaaaaaaggcgtacttttgtgaccgcaaaagcgattgctgcccgattgatagaggaattgttccgccgagcgcgtcgggattctttttttagggggaggatcaggcgacgagctttttcttgagcg Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PG0099:PG0100|PG0099:PG0100:phenylalanyl-tRNA synthetase beta subunit:hypothetical protein:<-<-:118377..119141 765 ctttgttactccttagttgtatatgtgcttcagagactcatgggtcaggtctcaaacgcgattattatatgtaagcccacaaatttagcgtttttctcggggagtgtttgttttatgttcgtcttgcgctggtttgcaccctccgagtgctctgcttttcgttctcccaaagattctgtctttcctttccggtttgaaaaattcggtgtatttcgggctgtaaaacgtggtctgagaatatttttgttttggcgcgggagttgaaaaaatctcgcgccggaacgaaaagattctcgcgccatttttttgggattttggtttgagatttgggcgattttcggttcgagtttcggcttgtgcgattggtgcctctgtttttttcgacacccttctctttcccttgtaccctttattccggaccaaccgccaacatttcggtcaaaaaatcttttttgtgcgagggaaaaaacatcttctcatttcttttcgtttgcggtctttttaattgttcttacgcgcgcgaacatattatatatccgctcccttttgtcttctttcttgggagggagtccttttcttcgggggctgttttttttgtcgaaccggttgaaaaaagattttgaaagatttgtctgtaaagaaaaaaggcgtacttttgtgaccgcaaaagcgattgctgcccgattgatagaggaattgttccgccgagcgcgtcgggattctttttttagggggaggatcaggcgacgagctttttcttgagcg Intra-Species Hit: Count: 0 Inter-species Hit: Count: 1 Min: 387 Max: 764 Len: 378 Subject: UniRef90_Q7MTA2 Cluster: Hypothetical protein; n=1; Porphyromonas gingivalis|Rep: Hypothetical protein - Porphyromonas gingivalis (Bacteroides gingivalis) HSP 1 e-value: 3.0E-19 bit: 97.8 Len: 378 Query Start:387 Query End:764 Subject Strand: null Subject Start: 56 Subject End: 182 .................................................................................................................................................................................................................................................................................................................................................................................................. A Q E K A R R L I L P L K K E X X X X X X X X X X X X X X X X A F A V T K V R L F S L Q T N L S K S F F N R F D K K N S P R R K G L P P K K E D K R E R I Y N M F A R V R T I K K T A N E K K * E D V F S L A Q K R F F D R N V G G - W S G I K G T R E R E G . .................................................................................................................................................................................................................................................................................................................................................................................................. A Q E K A R R L I L P L K K E S R R A R R N N S S I N R A A I A F A V T K V R L F S L Q T N L S K S F L N R F D K K K Q P P K K R T P S Q E R Q K K K H I Y N I V R A R K R D P K G A Q K K Q N E K R K K I L R K K T F Q S Q K G G R L R K E E D T K G R E G . ctttgttactccttagttgtatatgtgcttcagagactcatgggtcaggtctcaaacgcgattattatatgtaagcccacaaatttagcgtttttctcggggagtgtttgttttatgttcgtcttgcgctggtttgcaccctccgagtgctctgcttttcgttctcccaaagattctgtctttcctttccggtttgaaaaattcggtgtatttcgggctgtaaaacgtggtctgagaatatttttgttttggcgcgggagttgaaaaaatctcgcgccggaacgaaaagattctcgcgccatttttttgggattttggtttgagatttgggcgattttcggttcgagtttcggcttgtgcgattggtgcctctgtttttttcgacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnng Predict ORF larger than 30AA ================================================ Protein_Len: 39 Strand: + Start: 104 End: 220 ....................................................................................................... M F V L C S S C A G L H P P S A L L F V L P K I L S F L S G L K N S V Y F G L ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 60 Strand: + Start: 25 End: 261 ........................ M L Q R L M G Q V S N A I I I C K P T N L A F F S G S V C F M F V L R W F A P S E C S A F R S P K D S V F P F R F E K F ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 40 Strand: + Start: 201 End: 320 ........................................................................................................................................................................................................ M R C I S G C K T W S E N I F V L A R E L K K S R A G T K R F S R H F F G I L V ............................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 60 Strand: + Start: 269 End: 502 ............................................................................................................................................................................................................................................................................ M S R R N E K I L A P F F W D F G L R F G R F S V R V S A C A I G A S V F F D T L L F P L Y P L F R T N R Q H F G Q K I ....................................................................................................................................................................................................................................................................... Protein_Len: 34 Strand: + Start: 506 End: 607 ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M F L R A R T Y Y I S A P F C L L S W E G V L F F G G C F F C R T G .............................................................................................................................................................. Protein_Len: 60 Strand: + Start: 327 End: 620 ...................................................................................................................................................................................................................................................................................................................................... M G D F R F E F R L V R L V P L F F S T P F S F P C T L Y S G P T A N I S V K K S F L C E G K N I F S F L F V C G L F N ................................................................................................................................................. Protein_Len: 60 Strand: + Start: 301 End: 759 ............................................................................................................................................................................................................................................................................................................ M F L G F W F E I W A I F G S S F G L C D W C L C F F R H P S L S L V P F I P D Q P P T F R S K N L F C A R E K T S S H ...... Protein_Len: 60 Strand: - Start: 532 End: 720 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... G K Q R R E Q S P T R K K P P Q K K Q R V P Q F F I K F S K D T F F F P T S K H G C F R N S G S Q Y L F Q E A S R T P M ............................................. Protein_Len: 60 Strand: - Start: 515 End: 697 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. R S C I I Y G S G K T K K R P L S D K E E P A T K K T S G T S F L N Q F I Q R Y L F F A Y K Q S R L L S Q Q G I S L P M .................................................................... Protein_Len: 60 Strand: - Start: 480 End: 743 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... P L G K R R P S N K K D F R N F F S K S L N T Q L S F L R V K T V A F A I A A R N I S S N N R R A R R S E K K L P L I M ...................... Protein_Len: 60 Strand: - Start: 116 End: 313 ................................................................................................................... Q V R R T S Q K E N E W L N Q R E K G T Q F I R H I E P Q L V H D S F I K T K A R S N F F D R A P V F L N E R W K K P M .................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: - Start: 88 End: 423 ....................................................................................... Q K P A P T S F I E R R F S F I R A G N K Q S K P K L N P R N E T R T E A Q A I P A E T K K S V R R K G K Y G K N R V M ...................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: - Start: 48 End: 413 ............................................... L I N K N Q R P L Q F F R A G S R F S E R A M K K P N Q N S I Q A I K P E L K P K H S Q H R Q K K R C G E R E R T G K M ................................................................................................................................................................................................................................................................................................................................................................ ctttgttactccttagttgtatatgtgcttcagagactcatgggtcaggtctcaaacgcgattattatatgtaagcccacaaatttagcgtttttctcggggagtgtttgttttatgttcgtcttgcgctggtttgcaccctccgagtgctctgcttttcgttctcccaaagattctgtctttcctttccggtttgaaaaattcggtgtatttcgggctgtaaaacgtggtctgagaatatttttgttttggcgcgggagttgaaaaaatctcgcgccggaacgaaaagattctcgcgccatttttttgggattttggtttgagatttgggcgattttcggttcgagtttcggcttgtgcgattggtgcctctgtttttttcgacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnng Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ PromScan Matrix: RpoN Strand: + Score: 81 Start: 249 End: 265 ........................................................................................................................................................................................................................................................TTGGCGCGGGAGTTGAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ctttgttactccttagttgtatatgtgcttcagagactcatgggtcaggtctcaaacgcgattattatatgtaagcccacaaatttagcgtttttctcggggagtgtttgttttatgttcgtcttgcgctggtttgcaccctccgagtgctctgcttttcgttctcccaaagattctgtctttcctttccggtttgaaaaattcggtgtatttcgggctgtaaaacgtggtctgagaatatttttgttttggcgcgggagttgaaaaaatctcgcgccggaacgaaaagattctcgcgccatttttttgggattttggtttgagatttgggcgattttcggttcgagtttcggcttgtgcgattggtgcctctgtttttttcgacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnng Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 95 HP_score: -13.2 Tail_Score: -3.30903 Start: 239 End: 290 Full_Region: AACGTGGTCTGAGAA TATTTTTGTTTTGGCGCGGGAGTT GAAA AAATCTCGCGCCGGAACGAAAAGA TTCTCGCGCCATTTT ..............................................................................................................................................................................................................................................TATTTTTGTTTTGGCGCGGGAGTTGAAAAAATCTCGCGCCGGAACGAAAAGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 42 HP_score: -2.5 Tail_Score: -2.91328 Start: 274 End: 299 Full_Region: AGTTGAAAAAATCTC GCGCCGGAA CGAAAAGA TTCTCGCGC CATTTTTTTGGGATT .................................................................................................................................................................................................................................................................................GCGCCGGAACGAAAAGATTCTCGCGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. TransTerm Strand: + Conf: 76 HP_score: -5.6 Tail_Score: -4.79949 Start: 700 End: 719 Full_Region: TTGATAGAGGAATTG TTCCGCCG AGCG CGTCGGGA TTCTTTTTTTAGGGG ...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGCCGAGCGCGTCGGGA.............................................. Find igs database================================================ Query_seq: PG0099:PG0100|PG0099:PG0100:phenylalanyl-tRNA synthetase beta subunit:hypothetical protein:<-<-:118377..119141 765 ctttgttactccttagttgtatatgtgcttcagagactcatgggtcaggtctcaaacgcgattattatatgtaagcccacaaatttagcgtttttctcggggagtgtttgttttatgttcgtcttgcgctggtttgcaccctccgagtgctctgcttttcgttctcccaaagattctgtctttcctttccggtttgaaaaattcggtgtatttcgggctgtaaaacgtggtctgagaatatttttgttttggcgcgggagttgaaaaaatctcgcgccggaacgaaaagattctcgcgccatttttttgggattttggtttgagatttgggcgattttcggttcgagtttcggcttgtgcgattggtgcctctgtttttttcgacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnng Intra-Species Hit: Count: 3 Min: 1 Max: 386 Len: 386 Subject: NC_002950_PG0099_PG0100|phenylalanyl-tRNA synthetase beta subunit:hypothetical protein|NEGATIVE:NEGATIVE|[118377,119141]|765 HSP 1 e-value: 0.0 bit: 724.0 Len: 386 Query Start:1 Query End:386 Subject Strand: POSITIVE Subject Start: 1 Subject End: 386 ctttgttactccttagttgtatatgtgcttcagagactcatgggtcaggtctcaaacgcgattattatatgtaagcccacaaatttagcgtttttctcggggagtgtttgttttatgttcgtcttgcgctggtttgcaccctccgagtgctctgcttttcgttctcccaaagattctgtctttcctttccggtttgaaaaattcggtgtatttcgggctgtaaaacgtggtctgagaatatttttgttttggcgcgggagttgaaaaaatctcgcgccggaacgaaaagattctcgcgccannnnnnngggattttggtttgagatttgggcgattttcggttcgagtttcggcttgtgcgattggtgcctctgtttttttcgaca........................................................................................................................................................................................................................................................................................................................................................................................... ctttgttactccttagttgtatatgtgcttcagagactcatgggtcaggtctcaaacgcgattattatatgtaagcccacaaatttagcgtttttctcggggagtgtttgttttatgttcgtcttgcgctggtttgcaccctccgagtgctctgcttttcgttctcccaaagattctgtctttcctttccggtttgaaaaattcggtgtatttcgggctgtaaaacgtggtctgagaatatttttgttttggcgcgggagttgaaaaaatctcgcgccggaacgaaaagattctcgcgccatttttttgggattttggtttgagatttgggcgattttcggttcgagtttcggcttgtgcgattggtgcctctgtttttttcgaca........................................................................................................................................................................................................................................................................................................................................................................................... Subject: NC_002950_PG0043_PG0045|beta-hexosaminidase:heat shock protein 90|POSITIVE:POSITIVE|[53540,54198]|659 HSP 1 e-value: 3.0E-33 bit: 145.0 Len: 157 Query Start:195 Query End:351 Subject Strand: NEGATIVE Subject Start: 357 Subject End: 514 ..................................................................................................................................................................................................tgaaaaattcggtgtatttcggg-ctgtaaaacgtggtctgagaatatttttgttttggcgcgggagttgaaaaaatctcgcgccggaacgaaaagattctcgcgccannnnnnngggattttggtttgagatttgggcgattttcggttcgagtttc.............................................................................................................................................................................................................................................................................................................................................................................................................................. ..................................................................................................................................................................................................tgaaaaatccggtgtatttcagttctgaaaaacgtggtctgagaaaatttttattttggttcgggagttgaaaaaatctcgcctgagaacgaaaagattctcgcaccatttttgggggattttggtttcagatttgggcgattttcggttcgagtttc.............................................................................................................................................................................................................................................................................................................................................................................................................................. Subject: NC_002950_PG1626_PG1630|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1710547,1711911]|1365 HSP 1 e-value: 1.0E-29 bit: 133.0 Len: 123 Query Start:206 Query End:328 Subject Strand: POSITIVE Subject Start: 13 Subject End: 136 .............................................................................................................................................................................................................gtgtatttcggg-ctgtaaaacgtggtctgagaatatttttgttttggcgcgggagttgaaaaaatctcgcgccggaacgaaaagattctcgcgccannnnnnngggattttggtttgagattt..................................................................................................................................................................................................................................................................................................................................................................................................................................................... .............................................................................................................................................................................................................gtgtatttcggttctgaaaaacgtggtctgagaagatttttattttggttcgggagttgaaaaaatctcgcgccggaacgaaaagattctcgcgccattttttggagattttggtttgagattt..................................................................................................................................................................................................................................................................................................................................................................................................................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ CUUUGUUACUCCUUAGUUGUAUAUGUGCUUCAGAGACUCAUGGGUCAGGUCUCAAACGCGAUUAUUAUAUGUAAGCCCACAAAUUUAGCGUUUUUCUCGGGGAGUGUUUGUUUUAUGUUCGUCUUGCGCUGGUUUGCACCCUCCGAGUGCUCUGCUUUUCGUUCUCCCAAAGAUUCUGUCUUUCCUUUCCGGUUUGAAAAAUUCGGUGUAUUUCGGGCUGUAAAACGUGGUCUGAGAAUAUUUUUGUUUUGGCGCGGGAGUUGAAAAAAUCUCGCGCCGGAACGAAAAGAUUCUCGCGCCAUUUUUUUGGGAUUUUGGUUUGAGAUUUGGGCGAUUUUCGGUUCGAGUUUCGGCUUGUGCGAUUGGUGCCUCUGUUUUUUUCGACA ............(((((((((((...(((...(((((((.....(((((((((((((.(((........(((......))).....((((.....(((((((.((((....((..(((.......)))..))...)))).))))))).....))))..)))...(((((((((............(((.((((((((((.((.....)).)))))))))).)))..(((((.(((((((.(((((((((((((((((((.((....)).))))))))))))))))))).))))))).))))).))))))))).....))))))))))))).((.....))....)))))))))).))))))))))).................... (-122.10) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UGUCGAAAAAAACAGAGGCACCAAUCGCACAAGCCGAAACUCGAACCGAAAAUCGCCCAAAUCUCAAACCAAAAUCCCAAAAAAAUGGCGCGAGAAUCUUUUCGUUCCGGCGCGAGAUUUUUUCAACUCCCGCGCCAAAACAAAAAUAUUCUCAGACCACGUUUUACAGCCCGAAAUACACCGAAUUUUUCAAACCGGAAAGGAAAGACAGAAUCUUUGGGAGAACGAAAAGCAGAGCACUCGGAGGGUGCAAACCAGCGCAAGACGAACAUAAAACAAACACUCCCCGAGAAAAACGCUAAAUUUGUGGGCUUACAUAUAAUAAUCGCGUUUGAGACCUGACCCAUGAGUCUCUGAAGCACAUAUACAACUAAGGAGUAACAAAG ............(((((((.....((((....).)))..((((((((((..............................((((..((((..((((((.((((.(((..((((((.((..........)).))))))..))).)))).)))))).).)))..))))..((((((........(((((((..(...((.....))..........((((.(((((.............(((((.....)))))......((....).)................))))).)))).....)..)))))))))))))............))).))))))).............))))))).............................. (-86.60) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 965 60 11 151 102 NC_002950:PG0099|5end_phenylalanyl-tRNA_synthetase_beta_subunit_118286..118516_NEGATIVE 637 312 271 120 80 NC_002950:PG1617|5end_hypothetical_protein_1697755..1697985_NEGATIVE 601 300 251 169 120 NC_002950:PG0132|5end_hypothetical_protein_152879..153109_POSITIVE 576 318 271 93 46 NC_002950:PG2064|5end_hypothetical_protein_2160550..2160780_POSITIVE 553 300 251 111 62 NC_002950:PG1980|5end_hypothetical_protein_2067930..2068160_NEGATIVE 501 282 241 59 13 NC_002950:PG0080|5end_hypothetical_protein_93832..94062_NEGATIVE 483 300 251 89 40 NC_002950:PG1799|5end_hypothetical_protein_1894499..1894729_POSITIVE 473 167 131 228 178 NC_002950:PG1495|5end_DNA_topoisomerase_III_1571243..1571473_POSITIVE 466 311 271 122 82 NC_002950:PG0174|5end_pyridine_nucleotide-disulphide_oxidoreductase_family_protein_197628..197858_NEGATIVE 460 310 270 87 47 NC_002950:PG0313|5end_hypothetical_protein_347366..347596_POSITIVE 454 300 251 182 133 NC_002950:PG2063|5end_hypothetical_protein_2160596..2160826_NEGATIVE 430 370 328 210 162 NC_002950:PG1993|5end_excinuclease_ABC,_C_subunit_2083321..2083551_POSITIVE 396 299 252 203 156 NC_002950:PG0081|5end_hypothetical_protein_93805..94035_POSITIVE 393 140 95 205 163 NC_002950:PG0412|5end_DNA_mismatch_repair_protein_MutL_451440..451670_NEGATIVE 388 369 328 152 117 NC_002950:PG1940|5end_elongation_factor_EF-2_2027220..2027450_NEGATIVE 380 369 321 112 54 NC_002950:PG1988|5end_hypothetical_protein_2078867..2079097_NEGATIVE 377 315 271 148 104 NC_002950:PG0007|5end_hypothetical_protein_6913..7143_NEGATIVE 368 129 88 50 6 NC_002950:PG0857|5end_transcriptional_regulator,_putative_917319..917549_POSITIVE 367 300 256 161 115 NC_002950:PG1732|5end_integrase/recombinase_XerD_1820171..1820401_POSITIVE 367 370 327 174 130 NC_002950:PG0215|5end_hypothetical_protein_251460..251690_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 564 317 271 68 20 NC_002950:PG0542|3end_hypothetical_protein_595377..595527_NEGATIVE 473 167 131 139 89 NC_002950:PG1494|3end_hypothetical_protein_1571234..1571384_POSITIVE 395 288 241 145 98 NC_002950:PG1718|3end_hypothetical_protein_1806532..1806682_NEGATIVE 394 300 256 84 41 NC_002950:PG0732|3end_hypothetical_protein_783018..783168_POSITIVE 388 369 328 139 104 NC_002950:PG1941|3end_30S_ribosomal_protein_S7_2027233..2027383_NEGATIVE 385 157 115 58 19 NC_002950:PG1773|3end_PAP2_superfamily_protein_1861232..1861382_POSITIVE 380 369 321 96 38 NC_002950:PG1989|3end_hypothetical_protein_2078883..2079033_NEGATIVE 362 169 122 130 72 NC_002950:PG0198|3end_hypothetical_protein_237501..237651_POSITIVE 358 129 83 127 80 NC_002950:PG0900|3end_cytochrome_d_ubiquinol_oxidase,_subunit_I_964706..964856_NEGATIVE 351 157 119 122 73 NC_002950:PG0132|3end_hypothetical_protein_153054..153204_POSITIVE 347 157 118 132 85 NC_002950:PG2205|3end_2-dehydropantoate_2-reductase_2317145..2317295_POSITIVE 347 369 322 96 47 NC_002950:PG1352|3end_hypothetical_protein_1432737..1432887_NEGATIVE 346 162 121 110 61 NC_002950:PG2050|3end_hypothetical_protein_2149159..2149309_NEGATIVE 344 370 322 147 94 NC_002950:PG1242|3end_replicative_DNA_helicase_1319101..1319251_POSITIVE 344 155 118 53 14 NC_002950:PG0737|3end_hypothetical_protein_786546..786696_POSITIVE 344 320 274 151 101 NC_002950:PG0558|3end_purine_nucleoside_phosphorylase_615510..615660_NEGATIVE 341 309 263 48 1 NC_002950:PG0155|3end_riboflavin_biosynthesis_protein_RibD_177861..178011_NEGATIVE 340 177 140 90 45 NC_002950:PG0881|3end_recombinase_A_944165..944315_POSITIVE 337 137 96 137 90 NC_002950:PG0061|3end_yngK_protein_73763..73913_POSITIVE 336 150 101 75 28 NC_002950:PG1133|3end_hypothetical_protein_1214103..1214253_POSITIVE