Origin IGS: acctgagtcttatttgtctctatcgcaaaaaaggggtttcgatcggatcgttcctaccgtgcccccatctattcttctacgaacttcgtcccaaaggtaaggaaatgcggctgataaataaaaatcaatagtaaaaatgattttacaagggattttataccaagtattttcgagttagaaaattagccgagtaggatttctaagtggttgtcggtcgattcccgacaagatgggaatcaaaaatcataaggatgtatccttccccggagggcatagcagtaggacgcgaatgttcacgattcattcggcttcggctttttgattacatttgcacaccgacaaagtctttcgtgtgaatagaatctgtattgacgaatcaacaaacaatatgcatatgtactccgactttatcctaatgcacaaacggtcgatggtagagctctttctgccatttgcttattcgatattcatggattttgaaccgatcggacagcctattcctattatgaagtaaagagagattaggcttttcgactccccaccaaatagataaggcacgcactcgattcatctgcgaatcgagtgcgtgcctcctttatgtaagcttgtgaatcggccttttgagccggccgaactatatataaatcagatacgatttatatacaaattgaaaacgatttatatataaaacaaaaatggtctgtatataaatcgaaattcatttatatacagatcgtttccttccttttttagtttgaatcctacttccttttaggatgcttatttggaatgattccaagctcgtcttcgttgttgaaaacttttttggcttgagtttttagcctgtcacagcgttcgggcctatcggatgtggtattggtttttactgccgta .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 tacggcagtaaaaaccaataccacatccgataggcccgaacgctgtgacaggctaaaaactcaagccaaaaaagttttcaacaacgaagacgagcttggaatcattccaaataagcatcctaaaaggaagtaggattcaaactaaaaaaggaaggaaacgatctgtatataaatgaatttcgatttatatacagaccatttttgttttatatataaatcgttttcaatttgtatataaatcgtatctgatttatatatagttcggccggctcaaaaggccgattcacaagcttacataaaggaggcacgcactcgattcgcagatgaatcgagtgcgtgccttatctatttggtggggagtcgaaaagcctaatctctctttacttcataataggaataggctgtccgatcggttcaaaatccatgaatatcgaataagcaaatggcagaaagagctctaccatcgaccgtttgtgcattaggataaagtcggagtacatatgcatattgtttgttgattcgtcaatacagattctattcacacgaaagactttgtcggtgtgcaaatgtaatcaaaaagccgaagccgaatgaatcgtgaacattcgcgtcctactgctatgccctccggggaaggatacatccttatgatttttgattcccatcttgtcgggaatcgaccgacaaccacttagaaatcctactcggctaattttctaactcgaaaatacttggtataaaatcccttgtaaaatcatttttactattgatttttatttatcagccgcatttccttacctttgggacgaagttcgtagaagaatagatgggggcacggtaggaacgatccgatcgaaaccccttttttgcgatagagacaaataagactcaggt Mask Tandem Repeat Region ================================================ acctgagtcttatttgtctctatcgcaaaaaaggggtttcgatcggatcgttcctaccgtgcccccatctattcttctacgaacttcgtcccaaaggtaaggaaatgcggctgataaataaaaatcaatagtaaaaatgattttacaagggattttataccaagtattttcgagttagaaaattagccgagtaggatttctaagtggttgtcggtcgattcccgacaagatgggaatcaaaaatcataaggatgtatccttccccggagggcatagcagtaggacgcgaatgttcacgattcattcggcttcggctttttgattacatttgcacaccgacaaagtctttcgtgtgaatagaatctgtattgacgaatcaacaaacaatatgcatatgtactccgactttatcctaatgcacaaacggtcgatggtagagctctttctgccatttgcttattcgatattcatggattttgaaccgatcggacagcctattcctattatgaagtaaagagagattaggcttttcgactccccaccaaatagataaggcacgcactcgattcatctgcgaatcgagtgcgtgcctcctttatgtaagcttgtgaatcggccttttgagccggccgaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntggtctgtatataaatcgaaattcatttatatacagatcgtttccttccttttttagtttgaatcctacttccttttaggatgcttatttggaatgattccaagctcgtcttcgttgttgaaaacttttttggcttgagtttttagcctgtcacagcgttcgggcctatcggatgtggtattggtttttactgccgta Find is-nt database================================================ Query_seq: PG0094:PG0095|PG0094:PG0095:outer membrane efflux protein, putative:DNA mismatch repair protein:<-<-:111284..112177 894 acctgagtcttatttgtctctatcgcaaaaaaggggtttcgatcggatcgttcctaccgtgcccccatctattcttctacgaacttcgtcccaaaggtaaggaaatgcggctgataaataaaaatcaatagtaaaaatgattttacaagggattttataccaagtattttcgagttagaaaattagccgagtaggatttctaagtggttgtcggtcgattcccgacaagatgggaatcaaaaatcataaggatgtatccttccccggagggcatagcagtaggacgcgaatgttcacgattcattcggcttcggctttttgattacatttgcacaccgacaaagtctttcgtgtgaatagaatctgtattgacgaatcaacaaacaatatgcatatgtactccgactttatcctaatgcacaaacggtcgatggtagagctctttctgccatttgcttattcgatattcatggattttgaaccgatcggacagcctattcctattatgaagtaaagagagattaggcttttcgactccccaccaaatagataaggcacgcactcgattcatctgcgaatcgagtgcgtgcctcctttatgtaagcttgtgaatcggccttttgagccggccgaactatatataaatcagatacgatttatatacaaattgaaaacgatttatatataaaacaaaaatggtctgtatataaatcgaaattcatttatatacagatcgtttccttccttttttagtttgaatcctacttccttttaggatgcttatttggaatgattccaagctcgtcttcgttgttgaaaacttttttggcttgagtttttagcctgtcacagcgttcgggcctatcggatgtggtattggtttttactgccgta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PG0094:PG0095|PG0094:PG0095:outer membrane efflux protein, putative:DNA mismatch repair protein:<-<-:111284..112177 894 acctgagtcttatttgtctctatcgcaaaaaaggggtttcgatcggatcgttcctaccgtgcccccatctattcttctacgaacttcgtcccaaaggtaaggaaatgcggctgataaataaaaatcaatagtaaaaatgattttacaagggattttataccaagtattttcgagttagaaaattagccgagtaggatttctaagtggttgtcggtcgattcccgacaagatgggaatcaaaaatcataaggatgtatccttccccggagggcatagcagtaggacgcgaatgttcacgattcattcggcttcggctttttgattacatttgcacaccgacaaagtctttcgtgtgaatagaatctgtattgacgaatcaacaaacaatatgcatatgtactccgactttatcctaatgcacaaacggtcgatggtagagctctttctgccatttgcttattcgatattcatggattttgaaccgatcggacagcctattcctattatgaagtaaagagagattaggcttttcgactccccaccaaatagataaggcacgcactcgattcatctgcgaatcgagtgcgtgcctcctttatgtaagcttgtgaatcggccttttgagccggccgaactatatataaatcagatacgatttatatacaaattgaaaacgatttatatataaaacaaaaatggtctgtatataaatcgaaattcatttatatacagatcgtttccttccttttttagtttgaatcctacttccttttaggatgcttatttggaatgattccaagctcgtcttcgttgttgaaaacttttttggcttgagtttttagcctgtcacagcgttcgggcctatcggatgtggtattggtttttactgccgta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PG0094:PG0095|PG0094:PG0095:outer membrane efflux protein, putative:DNA mismatch repair protein:<-<-:111284..112177 894 acctgagtcttatttgtctctatcgcaaaaaaggggtttcgatcggatcgttcctaccgtgcccccatctattcttctacgaacttcgtcccaaaggtaaggaaatgcggctgataaataaaaatcaatagtaaaaatgattttacaagggattttataccaagtattttcgagttagaaaattagccgagtaggatttctaagtggttgtcggtcgattcccgacaagatgggaatcaaaaatcataaggatgtatccttccccggagggcatagcagtaggacgcgaatgttcacgattcattcggcttcggctttttgattacatttgcacaccgacaaagtctttcgtgtgaatagaatctgtattgacgaatcaacaaacaatatgcatatgtactccgactttatcctaatgcacaaacggtcgatggtagagctctttctgccatttgcttattcgatattcatggattttgaaccgatcggacagcctattcctattatgaagtaaagagagattaggcttttcgactccccaccaaatagataaggcacgcactcgattcatctgcgaatcgagtgcgtgcctcctttatgtaagcttgtgaatcggccttttgagccggccgaactatatataaatcagatacgatttatatacaaattgaaaacgatttatatataaaacaaaaatggtctgtatataaatcgaaattcatttatatacagatcgtttccttccttttttagtttgaatcctacttccttttaggatgcttatttggaatgattccaagctcgtcttcgttgttgaaaacttttttggcttgagtttttagcctgtcacagcgttcgggcctatcggatgtggtattggtttttactgccgta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 acctgagtcttatttgtctctatcgcaaaaaaggggtttcgatcggatcgttcctaccgtgcccccatctattcttctacgaacttcgtcccaaaggtaaggaaatgcggctgataaataaaaatcaatagtaaaaatgattttacaagggattttataccaagtattttcgagttagaaaattagccgagtaggatttctaagtggttgtcggtcgattcccgacaagatgggaatcaaaaatcataaggatgtatccttccccggagggcatagcagtaggacgcgaatgttcacgattcattcggcttcggctttttgattacatttgcacaccgacaaagtctttcgtgtgaatagaatctgtattgacgaatcaacaaacaatatgcatatgtactccgactttatcctaatgcacaaacggtcgatggtagagctctttctgccatttgcttattcgatattcatggattttgaaccgatcggacagcctattcctattatgaagtaaagagagattaggcttttcgactccccaccaaatagataaggcacgcactcgattcatctgcgaatcgagtgcgtgcctcctttatgtaagcttgtgaatcggccttttgagccggccgaactatatataaatcagatacgatttatatacaaattgaaaacgatttatatataaaacaaaaatggtctgtatataaatcgaaattcatttatatacagatcgtttccttccttttttagtttgaatcctacttccttttaggatgcttatttggaatgattccaagctcgtcttcgttgttgaaaacttttttggcttgagtttttagcctgtcacagcgttcgggcctatcggatgtggtattggtttttactgccgta Predict ORF larger than 30AA ================================================ Protein_Len: 30 Strand: + Start: 22 End: 111 ..................... M A K K G F R S D R S Y R A P I Y S S T N F V P K V R K C G ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 42 Strand: + Start: 3 End: 128 .. M S L I C L Y R K K G V S I G S F L P C P H L F F Y E L R P K G K E M R L I N K N Q .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 46 Strand: + Start: 182 End: 319 ..................................................................................................................................................................................... M S R V G F L S G C R S I P D K M G I K N H K D V S F P G G H S S R T R M F T I H S A S A F ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 50 Strand: + Start: 204 End: 353 ........................................................................................................................................................................................................... M V V G R F P T R W E S K I I R M Y P S P E G I A V G R E C S R F I R L R L F D Y I C T P T K S F V ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 34 Strand: + Start: 376 End: 477 ....................................................................................................................................................................................................................................................................................................................................................................................... M N K Q Y A Y V L R L Y P N A Q T V D G R A L S A I C L F D I H G F ................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 60 Strand: + Start: 329 End: 511 ........................................................................................................................................................................................................................................................................................................................................ M H T D K V F R V N R I C I D E S T N N M H M Y S D F I L M H K R S M V E L F L P F A Y S I F M D F E P I G Q P I P I M ............................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 40 Strand: + Start: 566 End: 685 ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M H L R I E C V P P L C K L V N R P F E P A E L Y I N Q I R F I Y K L K T I Y I ................................................................................................................................................................................................................. Protein_Len: 38 Strand: + Start: 637 End: 750 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ M Y K S D T I Y I Q I E N D L Y I K Q K W S V Y K S K F I Y I Q I V S F L F ................................................................................................................................................ Protein_Len: 44 Strand: - Start: 525 End: 656 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ A K R S G V L Y I L C A S S E D A F R T R A E K I Y A Q S D A K Q A P R V I Y L D S V M .............................................................................................................................................................................................................................................. Protein_Len: 36 Strand: - Start: 460 End: 567 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................... E I N M S K S G I P C G I G I I F Y L S I L S K S E G G F L Y P V C E M ....................................................................................................................................................................................................................................................................................................................................... Protein_Len: 52 Strand: - Start: 416 End: 571 ............................................................................................................................................................................................................................................................................................................................................................................................................................... H V F P R H Y L E K Q W K S I R Y E H I K F R D S L R N R N H L L S L N P K E V G W W I S L A R V R N M ................................................................................................................................................................................................................................................................................................................................... Protein_Len: 43 Strand: - Start: 304 End: 432 ............................................................................................................................................................................................................................................................................................................... E A E A K Q N C K C V S L T K R T F L I Q I S S D V F L I C I Y E S K I R I C L R D M .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 34 Strand: - Start: 203 End: 304 .......................................................................................................................................................................................................... T T T P R N G V L H S D F I M L I Y G E G S P M A T P R S H E R N M .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 32 Strand: - Start: 72 End: 167 ....................................................................... E E V F K T G F T L F H P Q Y I F I L L L F S K V L S K I G L M ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 47 Strand: - Start: 13 End: 153 ............ K D R D C F L P K S R I T G V T G G D I R R R V E D W L Y P F A A S L Y F D I T F I I K C P M ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... acctgagtcttatttgtctctatcgcaaaaaaggggtttcgatcggatcgttcctaccgtgcccccatctattcttctacgaacttcgtcccaaaggtaaggaaatgcggctgataaataaaaatcaatagtaaaaatgattttacaagggattttataccaagtattttcgagttagaaaattagccgagtaggatttctaagtggttgtcggtcgattcccgacaagatgggaatcaaaaatcataaggatgtatccttccccggagggcatagcagtaggacgcgaatgttcacgattcattcggcttcggctttttgattacatttgcacaccgacaaagtctttcgtgtgaatagaatctgtattgacgaatcaacaaacaatatgcatatgtactccgactttatcctaatgcacaaacggtcgatggtagagctctttctgccatttgcttattcgatattcatggattttgaaccgatcggacagcctattcctattatgaagtaaagagagattaggcttttcgactccccaccaaatagataaggcacgcactcgattcatctgcgaatcgagtgcgtgcctcctttatgtaagcttgtgaatcggccttttgagccggccgaactatatataaatcagatacgatttatatacaaattgaaaacgatttatatataaaacaaaaatggtctgtatataaatcgaaattcatttatatacagatcgtttccttccttttttagtttgaatcctacttccttttaggatgcttatttggaatgattccaagctcgtcttcgttgttgaaaacttttttggcttgagtttttagcctgtcacagcgttcgggcctatcggatgtggtattggtttttactgccgta Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ acctgagtcttatttgtctctatcgcaaaaaaggggtttcgatcggatcgttcctaccgtgcccccatctattcttctacgaacttcgtcccaaaggtaaggaaatgcggctgataaataaaaatcaatagtaaaaatgattttacaagggattttataccaagtattttcgagttagaaaattagccgagtaggatttctaagtggttgtcggtcgattcccgacaagatgggaatcaaaaatcataaggatgtatccttccccggagggcatagcagtaggacgcgaatgttcacgattcattcggcttcggctttttgattacatttgcacaccgacaaagtctttcgtgtgaatagaatctgtattgacgaatcaacaaacaatatgcatatgtactccgactttatcctaatgcacaaacggtcgatggtagagctctttctgccatttgcttattcgatattcatggattttgaaccgatcggacagcctattcctattatgaagtaaagagagattaggcttttcgactccccaccaaatagataaggcacgcactcgattcatctgcgaatcgagtgcgtgcctcctttatgtaagcttgtgaatcggccttttgagccggccgaactatatataaatcagatacgatttatatacaaattgaaaacgatttatatataaaacaaaaatggtctgtatataaatcgaaattcatttatatacagatcgtttccttccttttttagtttgaatcctacttccttttaggatgcttatttggaatgattccaagctcgtcttcgttgttgaaaacttttttggcttgagtttttagcctgtcacagcgttcgggcctatcggatgtggtattggtttttactgccgta Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 70 HP_score: -2.9 Tail_Score: -5.0538 Start: 33 End: 66 Full_Region: cgtagaagaatagat gggggcacggtagga acga tccgatcgaaacccc ttttttgcgatagag ................................gggggcacggtaggaacgatccgatcgaaacccc............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ TransTerm Strand: + Conf: 100 HP_score: -18.3 Tail_Score: -4.06892 Start: 551 End: 594 Full_Region: TCCCCACCAAATAGA TAAGGCACGCACTCGATTC ATCTGC GAATCGAGTGCGTGCCTCC TTTATGTAAGCTTGT ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGGCACGCACTCGATTCATCTGCGAATCGAGTGCGTGCCTCC............................................................................................................................................................................................................................................................................................................ TransTerm Strand: + Conf: 100 HP_score: -24.4 Tail_Score: -3.06686 Start: 554 End: 591 Full_Region: CCACCAAATAGATAA GGCACGCACTCGATTC ATCTGC GAATCGAGTGCGTGCC TCCTTTATGTAAGCT .........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCACGCACTCGATTCATCTGCGAATCGAGTGCGTGCC............................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 100 HP_score: -25.1 Tail_Score: -3.78419 Start: 554 End: 591 Full_Region: agcttacataaagga ggcacgcactcgattcg caga tgaatcgagtgcgtgcc ttatctatttggtgg .........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ggcacgcactcgattcgcagatgaatcgagtgcgtgcc............................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 78 HP_score: -7.4 Tail_Score: -4.41177 Start: 675 End: 714 Full_Region: tatataaatgaattt cgatttatatacagacca tttt tgttttatatataaatcg ttttcaatttgtata ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cgatttatatacagaccatttttgttttatatataaatcg.................................................................................................................................................................................... TransTerm Strand: - Conf: 95 HP_score: -6.0 Tail_Score: -5.58522 Start: 697 End: 736 Full_Region: aaaaaaggaaggaaa cgatctgtatataaatga att tcgatttatatacagacca tttttgttttatata ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cgatctgtatataaatgaatttcgatttatatacagacca.............................................................................................................................................................. TransTerm Strand: + Conf: 86 HP_score: -10.4 Tail_Score: -4.1144 Start: 697 End: 736 Full_Region: TATATAAAACAAAAA TGGTCTGTATATAAATCGA AAT TCATTTATATACAGATCG TTTCCTTCCTTTTTT ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTCTGTATATAAATCGAAATTCATTTATATACAGATCG.............................................................................................................................................................. TransTerm Strand: - Conf: 83 HP_score: -9.5 Tail_Score: -3.92673 Start: 698 End: 735 Full_Region: aaaaaggaaggaaac gatctgtatataaatga att tcgatttatatacagacc atttttgttttatat .........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gatctgtatataaatgaatttcgatttatatacagacc............................................................................................................................................................... TransTerm Strand: + Conf: 82 HP_score: -11.7 Tail_Score: -3.04424 Start: 698 End: 735 Full_Region: ATATAAAACAAAAAT GGTCTGTATATAAATCGA AAT TCATTTATATACAGATC GTTTCCTTCCTTTTT .........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCTGTATATAAATCGAAATTCATTTATATACAGATC............................................................................................................................................................... TransTerm Strand: + Conf: 78 HP_score: -10.7 Tail_Score: -3.05298 Start: 700 End: 733 Full_Region: ATAAAACAAAAATGG TCTGTATATAAATCGA AAT TCATTTATATACAGA TCGTTTCCTTCCTTT ...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGTATATAAATCGAAATTCATTTATATACAGA................................................................................................................................................................. Find igs database================================================ Query_seq: PG0094:PG0095|PG0094:PG0095:outer membrane efflux protein, putative:DNA mismatch repair protein:<-<-:111284..112177 894 acctgagtcttatttgtctctatcgcaaaaaaggggtttcgatcggatcgttcctaccgtgcccccatctattcttctacgaacttcgtcccaaaggtaaggaaatgcggctgataaataaaaatcaatagtaaaaatgattttacaagggattttataccaagtattttcgagttagaaaattagccgagtaggatttctaagtggttgtcggtcgattcccgacaagatgggaatcaaaaatcataaggatgtatccttccccggagggcatagcagtaggacgcgaatgttcacgattcattcggcttcggctttttgattacatttgcacaccgacaaagtctttcgtgtgaatagaatctgtattgacgaatcaacaaacaatatgcatatgtactccgactttatcctaatgcacaaacggtcgatggtagagctctttctgccatttgcttattcgatattcatggattttgaaccgatcggacagcctattcctattatgaagtaaagagagattaggcttttcgactccccaccaaatagataaggcacgcactcgattcatctgcgaatcgagtgcgtgcctcctttatgtaagcttgtgaatcggccttttgagccggccgaactatatataaatcagatacgatttatatacaaattgaaaacgatttatatataaaacaaaaatggtctgtatataaatcgaaattcatttatatacagatcgtttccttccttttttagtttgaatcctacttccttttaggatgcttatttggaatgattccaagctcgtcttcgttgttgaaaacttttttggcttgagtttttagcctgtcacagcgttcgggcctatcggatgtggtattggtttttactgccgta Intra-Species Hit: Count: 12 Min: 1 Max: 894 Len: 894 Subject: NC_002950_PG0094_PG0095|outer membrane efflux protein, putative:DNA mismatch repair protein|NEGATIVE:NEGATIVE|[111284,112177]|894 HSP 1 e-value: 0.0 bit: 1772.0 Len: 894 Query Start:1 Query End:894 Subject Strand: POSITIVE Subject Start: 1 Subject End: 894 acctgagtcttatttgtctctatcgcaaaaaaggggtttcgatcggatcgttcctaccgtgcccccatctattcttctacgaacttcgtcccaaaggtaaggaaatgcggctgataaataaaaatcaatagtaaaaatgattttacaagggattttataccaagtattttcgagttagaaaattagccgagtaggatttctaagtggttgtcggtcgattcccgacaagatgggaatcaaaaatcataaggatgtatccttccccggagggcatagcagtaggacgcgaatgttcacgattcattcggcttcggctttttgattacatttgcacaccgacaaagtctttcgtgtgaatagaatctgtattgacgaatcaacaaacaatatgcatatgtactccgactttatcctaatgcacaaacggtcgatggtagagctctttctgccatttgcttattcgatattcatggattttgaaccgatcggacagcctattcctattatgaagtaaagagagattaggcttttcgactccccaccaaatagataaggcacgcactcgattcatctgcgaatcgagtgcgtgcctcctttatgtaagcttgtgaatcggccttttgagccggccgaactatatataaatcagatacgatttatatacaaattgaaaacgatttatatataaaacaaaaatggtctgtatataaatcgaaattcatttatatacagatcgtttccttccttttttagtttgaatcctacttccttttaggatgcttatttggaatgattccaagctcgtcttcgttgttgaaaacttttttggcttgagtttttagcctgtcacagcgttcgggcctatcggatgtggtattggtttttactgccgta acctgagtcttatttgtctctatcgcaaaaaaggggtttcgatcggatcgttcctaccgtgcccccatctattcttctacgaacttcgtcccaaaggtaaggaaatgcggctgataaataaaaatcaatagtaaaaatgattttacaagggattttataccaagtattttcgagttagaaaattagccgagtaggatttctaagtggttgtcggtcgattcccgacaagatgggaatcaaaaatcataaggatgtatccttccccggagggcatagcagtaggacgcgaatgttcacgattcattcggcttcggctttttgattacatttgcacaccgacaaagtctttcgtgtgaatagaatctgtattgacgaatcaacaaacaatatgcatatgtactccgactttatcctaatgcacaaacggtcgatggtagagctctttctgccatttgcttattcgatattcatggattttgaaccgatcggacagcctattcctattatgaagtaaagagagattaggcttttcgactccccaccaaatagataaggcacgcactcgattcatctgcgaatcgagtgcgtgcctcctttatgtaagcttgtgaatcggccttttgagccggccgaactatatataaatcagatacgatttatatacaaattgaaaacgatttatatataaaacaaaaatggtctgtatataaatcgaaattcatttatatacagatcgtttccttccttttttagtttgaatcctacttccttttaggatgcttatttggaatgattccaagctcgtcttcgttgttgaaaacttttttggcttgagtttttagcctgtcacagcgttcgggcctatcggatgtggtattggtttttactgccgta Subject: NC_002950_PG1866_PG1868|hypothetical protein:hypothetical protein|POSITIVE:NEGATIVE|[1964797,1965187]|391 HSP 1 e-value: 9.0E-46 bit: 186.0 Len: 194 Query Start:543 Query End:736 Subject Strand: POSITIVE Subject Start: 26 Subject End: 219 ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................caaatagataaggcacgcactcgattcatctgcgaatcgagtgcgtgcctcctttatgtaagcttgtgaatcggccttttgagccggccgaactatatataaatcagatacgatttatatacaaattgaaaacgatttatatataaaacaaaaatggtctgtatataaatcgaaattcatttatatacagatcg.............................................................................................................................................................. ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................caaacagataaggcacgcactcgattcgtggtggaatcgggtgcgtgcctcttttatataagctcgggaatgggccttttgagccgtccgaactatatataaatcagatacgatctgtatacaaatggaaaacgatttgtatataaaacgaaaacgatctgtatataaatcgtttttgatctatatacagatcg.............................................................................................................................................................. HSP 2 e-value: 4.0E-17 bit: 91.7 Len: 62 Query Start:765 Query End:826 Subject Strand: POSITIVE Subject Start: 293 Subject End: 353 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cttccttttaggatgcttatttggaatgattccaagctcgtcttcgttgttgaaaacttttt.................................................................... ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cttcctttcagg-tgcttatttggaatgattccaaactcgtcttcgttgttgaaaacttttt.................................................................... Subject: NC_002950_PG0404_PG0408|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[440197,441041]|845 HSP 1 e-value: 1.0E-17 bit: 93.7 Len: 55 Query Start:775 Query End:829 Subject Strand: POSITIVE Subject Start: 623 Subject End: 677 ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ggatgcttatttggaatgattccaagctcgtcttcgttgttgaaaacttttttgg................................................................. ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ggatgcttatttggaatcattccaaactcgtcttcgttgttgaaaacttttttgg................................................................. HSP 2 e-value: 4.0E-11 bit: 71.9 Len: 72 Query Start:667 Query End:738 Subject Strand: POSITIVE Subject Start: 471 Subject End: 542 ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................attgaaaacgatttatatataaaacaaaaatggtctgtatataaatcgaaattcatttatatacagatcgtt............................................................................................................................................................ ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................attgaaaacgatttatatataaaacgaaaaccatttatatataaattgaaagtcatttatatacaaatcgtt............................................................................................................................................................ Subject: NC_002950_PG0340_PG0343|hypothetical protein:methionine gamma-lyase|POSITIVE:NEGATIVE|[376497,377270]|774 HSP 1 e-value: 4.0E-17 bit: 91.7 Len: 50 Query Start:778 Query End:827 Subject Strand: POSITIVE Subject Start: 580 Subject End: 629 .........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tgcttatttggaatgattccaagctcgtcttcgttgttgaaaactttttt................................................................... .........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tgcttatttggaatgattccaaactcgtcttcgttgttgaaaactttttt................................................................... HSP 2 e-value: 9.0E-6 bit: 54.0 Len: 79 Query Start:636 Query End:714 Subject Strand: POSITIVE Subject Start: 416 Subject End: 494 ...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tatatataaatcagatacgatttatatacaaattgaaaacgatttatatataaaacaaaaatggtctgtatataaatcg.................................................................................................................................................................................... ...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tatatataaattaaaaatgatttatatacaaaatgaaaacgatatatatacaaatcgaaaaagctttatatataaatcg.................................................................................................................................................................................... Subject: NC_002950_PG1889_PG1890|hypothetical protein:lipoprotein, putative|POSITIVE:POSITIVE|[1987151,1987704]|554 HSP 1 e-value: 1.0E-14 bit: 83.8 Len: 54 Query Start:778 Query End:831 Subject Strand: POSITIVE Subject Start: 324 Subject End: 377 .........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tgcttatttggaatgattccaagctcgtcttcgttgttgaaaacttttttggct............................................................... .........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tgcttatttagaatgattctaagctcgtcttcattgttgaaaacttttttggct............................................................... HSP 2 e-value: 4.0E-8 bit: 61.9 Len: 71 Query Start:667 Query End:737 Subject Strand: POSITIVE Subject Start: 168 Subject End: 238 ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................attgaaaacgatttatatataaaacaaaaatggtctgtatataaatcgaaattcatttatatacagatcgt............................................................................................................................................................. ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................attgaaaacgatttatatataaattgaaaacgatctatatataaattgaaaatggtttatatacagatcgt............................................................................................................................................................. HSP 3 e-value: 1.0E-7 bit: 60.0 Len: 38 Query Start:652 Query End:689 Subject Strand: POSITIVE Subject Start: 175 Subject End: 212 ...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................acgatttatatacaaattgaaaacgatttatatataaa............................................................................................................................................................................................................. ...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................acgatttatatataaattgaaaacgatctatatataaa............................................................................................................................................................................................................. Subject: NC_002950_PG0609_PG0610|hypothetical protein:hypothetical protein|POSITIVE:NEGATIVE|[663416,663693]|278 HSP 1 e-value: 2.0E-13 bit: 79.8 Len: 104 Query Start:635 Query End:738 Subject Strand: NEGATIVE Subject Start: 13 Subject End: 116 ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ctatatataaatcagatacgatttatatacaaattgaaaacgatttatatataaaacaaaaatggtctgtatataaatcgaaattcatttatatacagatcgtt............................................................................................................................................................ ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ctatatacaaatcatttacgatctatatatttattgaaaacgattaatatataaaacgaaaatgatttatatataaattgaaaatgttttatatacagatcgtt............................................................................................................................................................ Subject: NC_002950_PG0022_PG0024|sulfate permease family protein:redox-sensing transcriptional repressor Rex|NEGATIVE:POSITIVE|[26887,27871]|985 HSP 1 e-value: 2.0E-12 bit: 75.8 Len: 82 Query Start:636 Query End:717 Subject Strand: NEGATIVE Subject Start: 389 Subject End: 470 ...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tatatataaatcagatacgatttatatacaaattgaaaacgatttatatataaaacaaaaatggtctgtatataaatcgaaa................................................................................................................................................................................. ...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tatatacaaatcgaatacgatctatatacaaatggaaaatgatttatatataaatcgaaaacgatctgtatataaattgaaa................................................................................................................................................................................. HSP 2 e-value: 1.0E-10 bit: 69.9 Len: 47 Query Start:779 Query End:825 Subject Strand: NEGATIVE Subject Start: 237 Subject End: 283 ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gcttatttggaatgattccaagctcgtcttcgttgttgaaaactttt..................................................................... ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gcttatttagaatgattccaaactcttcttcgttgttgaaaactttt..................................................................... Subject: NC_002950_PG1743_PG1745|2-dehydro-3-deoxyphosphooctonate aldolase:phosphoribulokinase family protein|NEGATIVE:NEGATIVE|[1828439,1829524]|1086 HSP 1 e-value: 9.0E-12 bit: 73.8 Len: 53 Query Start:778 Query End:830 Subject Strand: NEGATIVE Subject Start: 277 Subject End: 329 .........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tgcttatttggaatgattccaagctcgtcttcgttgttgaaaacttttttggc................................................................ .........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tgcttatttggaatcattccaaacacttcttcgttgttgaaaacttttttggc................................................................ HSP 2 e-value: 4.0E-11 bit: 71.9 Len: 44 Query Start:655 Query End:698 Subject Strand: NEGATIVE Subject Start: 431 Subject End: 474 ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atttatatacaaattgaaaacgatttatatataaaacaaaaatg.................................................................................................................................................................................................... ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atttatatacaaaatgaaaacgatttatatataaatcaaaaatg.................................................................................................................................................................................................... Subject: NC_002950_PG2083_PG2085|hypothetical protein:tryptophanyl-tRNA synthetase|NEGATIVE:POSITIVE|[2184598,2185671]|1074 HSP 1 e-value: 4.0E-11 bit: 71.9 Len: 56 Query Start:775 Query End:830 Subject Strand: POSITIVE Subject Start: 687 Subject End: 742 ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ggatgcttatttggaatgattccaagctcgtcttcgttgttgaaaacttttttggc................................................................ ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ggatacttatttggaatgattctaaactcagcttcgttgttgaaaacttttttggc................................................................ HSP 2 e-value: 6.0E-10 bit: 67.9 Len: 54 Query Start:636 Query End:689 Subject Strand: POSITIVE Subject Start: 548 Subject End: 601 ...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tatatataaatcagatacgatttatatacaaattgaaaacgatttatatataaa............................................................................................................................................................................................................. ...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tatatataaattagaaacgatctatatacaaatcgaaaacggtttatatataaa............................................................................................................................................................................................................. Subject: NC_002950_PG1375_PG1378|hypothetical protein:A/G-specific adenine glycosylase|POSITIVE:NEGATIVE|[1456804,1457804]|1001 HSP 1 e-value: 6.0E-10 bit: 67.9 Len: 50 Query Start:778 Query End:827 Subject Strand: NEGATIVE Subject Start: 321 Subject End: 370 .........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tgcttatttggaatgattccaagctcgtcttcgttgttgaaaactttttt................................................................... .........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tgcttatttggaatgattctaaactcatcttcattgttgaaaactttttt................................................................... HSP 2 e-value: 1.0E-7 bit: 60.0 Len: 62 Query Start:678 Query End:739 Subject Strand: NEGATIVE Subject Start: 452 Subject End: 513 .....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tttatatataaaacaaaaatggtctgtatataaatcgaaattcatttatatacagatcgttt........................................................................................................................................................... .....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tttatatatagatcaaaaacgatctatatacaaatcgaaaatgatttatatacagatcgttt........................................................................................................................................................... Subject: NC_002950_PG1119_PG1121|flavodoxin, putative:asparaginyl-tRNA synthetase|POSITIVE:NEGATIVE|[1195544,1196235]|692 HSP 1 e-value: 2.0E-9 bit: 65.9 Len: 49 Query Start:781 Query End:829 Subject Strand: NEGATIVE Subject Start: 158 Subject End: 206 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ttatttggaatgattccaagctcgtcttcgttgttgaaaacttttttgg................................................................. ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ttatttagaatgattccaaacttgtcttcgttgttgaaaagttttttgg................................................................. HSP 2 e-value: 6.0E-7 bit: 58.0 Len: 85 Query Start:654 Query End:738 Subject Strand: NEGATIVE Subject Start: 293 Subject End: 377 .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gatttatatacaaattgaaaacgatttatatataaaacaaaaatggtctgtatataaatcgaaattcatttatatacagatcgtt............................................................................................................................................................ .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gatttatatatttattgaaaacgatttgtatataaatcgaaaacgatctgtatataaattaaaaatgctttatatatagatcgtt............................................................................................................................................................ Subject: NC_002950_PG1130_PG1132|TPR domain protein:valyl-tRNA synthetase|POSITIVE:POSITIVE|[1210191,1211051]|861 HSP 1 e-value: 9.0E-9 bit: 63.9 Len: 52 Query Start:778 Query End:829 Subject Strand: POSITIVE Subject Start: 528 Subject End: 579 .........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tgcttatttggaatgattccaagctcgtcttcgttgttgaaaacttttttgg................................................................. .........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tgcttatttagaatcattcaaaactcatcttcgttgttgaaaacttttttgg................................................................. HSP 2 e-value: 4.0E-8 bit: 61.9 Len: 87 Query Start:653 Query End:739 Subject Strand: POSITIVE Subject Start: 359 Subject End: 445 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cgatttatatacaaattgaaaacgatttatatataaaacaaaaatggtctgtatataaatcgaaattcatttatatacagatcgttt........................................................................................................................................................... ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cgatttatatataaattgaaaacgattaatatacagatcgaaaatgatttatatataaatcgaaaatggttgatatacaaatcgttt........................................................................................................................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ ACCUGAGUCUUAUUUGUCUCUAUCGCAAAAAAGGGGUUUCGAUCGGAUCGUUCCUACCGUGCCCCCAUCUAUUCUUCUACGAACUUCGUCCCAAAGGUAAGGAAAUGCGGCUGAUAAAUAAAAAUCAAUAGUAAAAAUGAUUUUACAAGGGAUUUUAUACCAAGUAUUUUCGAGUUAGAAAAUUAGCCGAGUAGGAUUUCUAAGUGGUUGUCGGUCGAUUCCCGACAAGAUGGGAAUCAAAAAUCAUAAGGAUGUAUCCUUCCCCGGAGGGCAUAGCAGUAGGACGCGAAUGUUCACGAUUCAUUCGGCUUCGGCUUUUUGAUUACAUUUGCACACCGACAAAGUCUUUCGUGUGAAUAGAAUCUGUAUUGACGAAUCAACAAACAAUAUGCAUAUGUACUCCGACUUUAUCCUAAUGCACAAACGGUCGAUGGUAGAGCUCUUUCUGCCAUUUGCUUAUUCGAUAUUCAUGGAUUUUGAACCGAUCGGACAGCCUAUUCCUAUUAUGAAGUAAAGAGAGAUUAGGCUUUUCGACUCCCCACCAAAUAGAUAAGGCACGCACUCGAUUCAUCUGCGAAUCGAGUGCGUGCCUCCUUUAUGUAAGCUUGUGAAUCGGCCUUUUGAGCCGGCCGAACUAUAUAUAAAUCAGAUACGAUUUAUAUACAAAUUGAAAACGAUUUAUAUAUAAAACAAAAAUGGUCUGUAUAUAAAUCGAAAUUCAUUUAUAUACAGAUCGUUUCCUUCCUUUUUUAGUUUGAAUCCUACUUCCUUUUAGGAUGCUUAUUUGGAAUGAUUCCAAGCUCGUCUUCGUUGUUGAAAACUUUUUUGGCUUGAGUUUUUAGCCUGUCACAGCGUUCGGGCCUAUCGGAUGUGGUAUUGGUUUUUACUGCCGUA ...(((...(((((((((....(((((.....(((((..((...(((....)))...)).)))))..(((..((((..(((.....)))....))))...)))..)))))..)))))))))...))).((((((((((.(..(((((.((((((...........((((((......))))))...(((((((((..(((((((.(((((((((.......)))))))..(((((.(((((......(((((.((.........(((..(((...(((.(((((.((((((((.......(((...(((....)))...)))..))))))))........((((((...((((((.(((.....(((..(((....)))))).....))).))))))......)))))).))))).))).((((.((((((((((((((....)))))))....((((((((((.(((....))).))))...(((((((.((((((.((((.((((...))))..)).)).)))))).))))).))........(((((..(((((((((((((((((......)))))))))))))))))..)))))))))))......))))))).)))).)))..)))...((((((((((((.....((((((......)))))).....))))))))))))..))..(((((((((((((((((((.(.....))))))))))))))))))))...)))))......))))).)))))...)).)))))))..)))))))))...))))))..(((((....(((((((((((((((.........))))))))).......))))))..)))))........)))))...).))))))))))..... (-269.51) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UACGGCAGUAAAAACCAAUACCACAUCCGAUAGGCCCGAACGCUGUGACAGGCUAAAAACUCAAGCCAAAAAAGUUUUCAACAACGAAGACGAGCUUGGAAUCAUUCCAAAUAAGCAUCCUAAAAGGAAGUAGGAUUCAAACUAAAAAAGGAAGGAAACGAUCUGUAUAUAAAUGAAUUUCGAUUUAUAUACAGACCAUUUUUGUUUUAUAUAUAAAUCGUUUUCAAUUUGUAUAUAAAUCGUAUCUGAUUUAUAUAUAGUUCGGCCGGCUCAAAAGGCCGAUUCACAAGCUUACAUAAAGGAGGCACGCACUCGAUUCGCAGAUGAAUCGAGUGCGUGCCUUAUCUAUUUGGUGGGGAGUCGAAAAGCCUAAUCUCUCUUUACUUCAUAAUAGGAAUAGGCUGUCCGAUCGGUUCAAAAUCCAUGAAUAUCGAAUAAGCAAAUGGCAGAAAGAGCUCUACCAUCGACCGUUUGUGCAUUAGGAUAAAGUCGGAGUACAUAUGCAUAUUGUUUGUUGAUUCGUCAAUACAGAUUCUAUUCACACGAAAGACUUUGUCGGUGUGCAAAUGUAAUCAAAAAGCCGAAGCCGAAUGAAUCGUGAACAUUCGCGUCCUACUGCUAUGCCCUCCGGGGAAGGAUACAUCCUUAUGAUUUUUGAUUCCCAUCUUGUCGGGAAUCGACCGACAACCACUUAGAAAUCCUACUCGGCUAAUUUUCUAACUCGAAAAUACUUGGUAUAAAAUCCCUUGUAAAAUCAUUUUUACUAUUGAUUUUUAUUUAUCAGCCGCAUUUCCUUACCUUUGGGACGAAGUUCGUAGAAGAAUAGAUGGGGGCACGGUAGGAACGAUCCGAUCGAAACCCCUUUUUUGCGAUAGAGACAAAUAAGACUCAGGU ..((((.(((((.....((((((...((((((((.......(((((((..((((.........))))..................((((((((..(((((.....)))))......((((((........))))))..((((.(((((.((..(....)..(((((((((((((........))))))))))))))).)))))))))..........))))))))...((((((((((((((....)))))))))))))).((((((.........)))))).)))).)))..........(((((((((((((((((((....))))))))))))))))))).((((..((((.(((((((((((((((((.((.((.((........)).)))).))))).((((..((((((((.......)))..)))))....((((((((..((.((....))....))..))))))))(((.((((((....((((..(((((.(((((((((...(((((....)))))(((((.(((.(((....)))))).)))))))))))))).))))).........))))...((((((.........)))))).)))))).)))....(((....)))..))))............))))))))))))....((((((.......))))))))))..))))...)))).))))...((((((......))))))...))))))((((((....((((((....))))))....))))))..)))))..))))....((((.......))))......((((((((((......((((...((((.(((....))).))))...))))))))))))))..(((.(......).))).... (-262.20) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 1012 70 21 161 112 NC_002950:PG0094|5end_outer_membrane_efflux_protein,_putative_111193..111423_NEGATIVE 686 830 781 122 73 NC_002950:PG0609|5end_hypothetical_protein_663183..663413_POSITIVE 605 830 781 67 18 NC_002950:PG0773|5end_hypothetical_protein_825131..825361_POSITIVE 585 830 781 85 36 NC_002950:PG1357|5end_hypothetical_protein_1436458..1436688_NEGATIVE 553 829 781 54 6 NC_002950:PG0995|5end_hypothetical_protein_1055585..1055815_NEGATIVE 489 338 291 196 150 NC_002950:PG1170|5end_SerB_family_protein_1249163..1249393_POSITIVE 421 630 581 114 63 NC_002950:PG0065|5end_efflux_transporter,_RND_family,_MFP_subunit_81187..81417_NEGATIVE 408 300 253 71 22 NC_002950:PG1230|5end_hypothetical_protein_1308068..1308298_NEGATIVE 392 846 803 45 1 NC_002950:PG1167|5end_hypothetical_protein_1248427..1248657_POSITIVE 384 89 41 208 159 NC_002950:PG2075|5end_hypothetical_protein_2176466..2176696_NEGATIVE 381 289 241 129 85 NC_002950:PG0499|5end_hypothetical_protein_538709..538939_POSITIVE 378 300 254 187 140 NC_002950:PG1720|5end_hypothetical_protein_1808615..1808845_POSITIVE 372 700 651 145 98 NC_002950:PG0371|5end_hypothetical_protein_404043..404273_POSITIVE 371 634 591 79 27 NC_002950:PG0210|5end_precorrin-6x_reductase/cobalamin_biosynthetic_protein_CbiD_245969..246199_NEGATIVE 365 596 553 81 29 NC_002950:PG0608|5end_hypothetical_protein_662945..663175_POSITIVE 364 288 250 223 180 NC_002950:PG2119|5end_oxidoreductase,_Gfo/Idh/MocA_family_2226547..2226777_POSITIVE 361 618 573 116 54 NC_002950:PG1091|5end_DHH_subfamily_1_protein_1157017..1157247_POSITIVE 358 629 581 119 50 NC_002950:PG1825|5end_hypothetical_protein_1919671..1919901_NEGATIVE 358 629 583 116 71 NC_002950:PG1721|5end_ribonuclease_R_1810284..1810514_POSITIVE 358 680 631 127 78 NC_002950:PG1222|5end_hypothetical_protein_1299392..1299622_NEGATIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 745 829 781 55 7 NC_002950:PG1868|3end_hypothetical_protein_1965098..1965248_NEGATIVE 707 592 553 55 16 NC_002950:PG1866|3end_hypothetical_protein_1964736..1964886_POSITIVE 605 830 781 60 11 NC_002950:PG0772|3end_hypothetical_protein_825204..825354_POSITIVE 521 810 765 151 103 NC_002950:PG0995|3end_hypothetical_protein_1055469..1055619_NEGATIVE 490 700 652 52 4 NC_002950:PG0773|3end_hypothetical_protein_825348..825498_POSITIVE 483 816 780 151 115 NC_002950:PG1167|3end_hypothetical_protein_1248644..1248794_POSITIVE 423 686 641 50 5 NC_002950:PG1357|3end_hypothetical_protein_1436327..1436477_NEGATIVE 396 598 553 43 12 NC_002950:PG0195|3end_rubrerythrin_232704..232854_POSITIVE 392 290 241 86 33 NC_002950:PG0656|3end_50S_ribosomal_protein_L34_706945..707095_NEGATIVE 392 882 841 151 100 NC_002950:PG0558|3end_purine_nucleoside_phosphorylase_615510..615660_NEGATIVE 382 66 23 66 9 NC_002950:PG0726|3end_lipoprotein,_putative_778003..778153_NEGATIVE 371 634 591 82 30 NC_002950:PG0211|3end_cobalamin_biosynthesis_protein_CbiG/precorrin-4_C11-methyltransferase_245966..246116_NEGATIVE 370 597 552 59 6 NC_002950:PG1274|3end_elongation_factor_P_1352489..1352639_POSITIVE 360 470 425 145 98 NC_002950:PG0020|3end_transcriptional_regulator,_MarR_family_24166..24316_POSITIVE 358 310 265 138 101 NC_002950:PG1967|3end_TPR_domain_protein_2058135..2058285_POSITIVE 358 629 581 144 75 NC_002950:PG1826|3end_hypothetical_protein_1919646..1919796_NEGATIVE 355 596 554 50 4 NC_002950:PG0607|3end_hypothetical_protein_662994..663144_POSITIVE 354 315 271 131 79 NC_002950:PG2150|3end_LysM_domain_protein_2257667..2257817_NEGATIVE 353 80 34 56 1 NC_002950:PG2037|3end_hypothetical_protein_2137591..2137741_NEGATIVE 348 879 836 145 95 NC_002950:PG1942|3end_30S_ribosomal_protein_S12_2027946..2028096_NEGATIVE