Origin IGS: agtctcatctctttatggttaaagacggcaacctttccgcagaaaaaaacgcaaggcctaaattaaccccaactaccagaagagggtgtgtcaaaattcagtttcaagcagggggccgggatcatcgtttgtatagaaaaaccgctatcaaatcaatagtgtcctaaatgtttgcttagaggggggagtttttagtatgagagctgagtcgctccaatacaagacttttgggatttgagggggatccccctgcctacggaaagagctgattttgttcttccggcggaggcgaaaagggttcattgatccattggccttttcttacgtcgagctgacgtgaggttatcaatcgcatagaaactcgaaccgaaaatcgcccaaatctgaaaccaaaatcccccaaaaatggtgcgagaatcttttcgttctcaggcgagattttttcaactcccgaaccaaaataaaaattttctcagaccacgtttttcagaactgaaatacaccggatttttcagtacacgtcaatcattcggaagcgaaaaaggcagtctgaatgaaagaatgcgccagattgtcagttccggaccctgtggcatcggatttgtcgttcctttcgacggaatagaaacaaacaaaacattaacagataataatacact .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 agtgtattattatctgttaatgttttgtttgtttctattccgtcgaaaggaacgacaaatccgatgccacagggtccggaactgacaatctggcgcattctttcattcagactgcctttttcgcttccgaatgattgacgtgtactgaaaaatccggtgtatttcagttctgaaaaacgtggtctgagaaaatttttattttggttcgggagttgaaaaaatctcgcctgagaacgaaaagattctcgcaccatttttgggggattttggtttcagatttgggcgattttcggttcgagtttctatgcgattgataacctcacgtcagctcgacgtaagaaaaggccaatggatcaatgaacccttttcgcctccgccggaagaacaaaatcagctctttccgtaggcagggggatccccctcaaatcccaaaagtcttgtattggagcgactcagctctcatactaaaaactcccccctctaagcaaacatttaggacactattgatttgatagcggtttttctatacaaacgatgatcccggccccctgcttgaaactgaattttgacacaccctcttctggtagttggggttaatttaggccttgcgtttttttctgcggaaaggttgccgtctttaaccataaagagatgagact Mask Tandem Repeat Region ================================================ agtctcatctctttatggttaaagacggcaacctttccgcagaaaaaaacgcaaggcctaaattaaccccaactaccagaagagggtgtgtcaaaattcagtttcaagcagggggccgggatcatcgtttgtatagaaaaaccgctatcaaatcaatagtgtcctaaatgtttgcttagaggggggagtttttagtatgagagctgagtcgctccaatacaagacttttgggatttgagggggatccccctgcctacggaaagagctgattttgttcttccggcggaggcgaaaagggttcattgatccattggccttttcttacgtcgagctgacgtgaggttatcaatcgcatagaaactcgaaccgaaaatcgcccaaatctgaaaccaaaatcccccaaaaatggtgcgagaatcttttcgttctcaggcgagattttttcaactcccgaaccaaaataaaaattttctcagaccacgtttttcagaactgaaatacaccggatttttcagtacacgtcaatcattcggaagcgaaaaaggcagtctgaatgaaagaatgcgccagattgtcagttccggaccctgtggcatcggatttgtcgttcctttcgacggaatagaaacaaacaaaacattaacagataataatacact Find is-nt database================================================ Query_seq: PG0043:PG0045|PG0043:PG0045:beta-hexosaminidase:heat shock protein 90:->->:53540..54198 659 agtctcatctctttatggttaaagacggcaacctttccgcagaaaaaaacgcaaggcctaaattaaccccaactaccagaagagggtgtgtcaaaattcagtttcaagcagggggccgggatcatcgtttgtatagaaaaaccgctatcaaatcaatagtgtcctaaatgtttgcttagaggggggagtttttagtatgagagctgagtcgctccaatacaagacttttgggatttgagggggatccccctgcctacggaaagagctgattttgttcttccggcggaggcgaaaagggttcattgatccattggccttttcttacgtcgagctgacgtgaggttatcaatcgcatagaaactcgaaccgaaaatcgcccaaatctgaaaccaaaatcccccaaaaatggtgcgagaatcttttcgttctcaggcgagattttttcaactcccgaaccaaaataaaaattttctcagaccacgtttttcagaactgaaatacaccggatttttcagtacacgtcaatcattcggaagcgaaaaaggcagtctgaatgaaagaatgcgccagattgtcagttccggaccctgtggcatcggatttgtcgttcctttcgacggaatagaaacaaacaaaacattaacagataataatacact Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PG0043:PG0045|PG0043:PG0045:beta-hexosaminidase:heat shock protein 90:->->:53540..54198 659 agtctcatctctttatggttaaagacggcaacctttccgcagaaaaaaacgcaaggcctaaattaaccccaactaccagaagagggtgtgtcaaaattcagtttcaagcagggggccgggatcatcgtttgtatagaaaaaccgctatcaaatcaatagtgtcctaaatgtttgcttagaggggggagtttttagtatgagagctgagtcgctccaatacaagacttttgggatttgagggggatccccctgcctacggaaagagctgattttgttcttccggcggaggcgaaaagggttcattgatccattggccttttcttacgtcgagctgacgtgaggttatcaatcgcatagaaactcgaaccgaaaatcgcccaaatctgaaaccaaaatcccccaaaaatggtgcgagaatcttttcgttctcaggcgagattttttcaactcccgaaccaaaataaaaattttctcagaccacgtttttcagaactgaaatacaccggatttttcagtacacgtcaatcattcggaagcgaaaaaggcagtctgaatgaaagaatgcgccagattgtcagttccggaccctgtggcatcggatttgtcgttcctttcgacggaatagaaacaaacaaaacattaacagataataatacact Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PG0043:PG0045|PG0043:PG0045:beta-hexosaminidase:heat shock protein 90:->->:53540..54198 659 agtctcatctctttatggttaaagacggcaacctttccgcagaaaaaaacgcaaggcctaaattaaccccaactaccagaagagggtgtgtcaaaattcagtttcaagcagggggccgggatcatcgtttgtatagaaaaaccgctatcaaatcaatagtgtcctaaatgtttgcttagaggggggagtttttagtatgagagctgagtcgctccaatacaagacttttgggatttgagggggatccccctgcctacggaaagagctgattttgttcttccggcggaggcgaaaagggttcattgatccattggccttttcttacgtcgagctgacgtgaggttatcaatcgcatagaaactcgaaccgaaaatcgcccaaatctgaaaccaaaatcccccaaaaatggtgcgagaatcttttcgttctcaggcgagattttttcaactcccgaaccaaaataaaaattttctcagaccacgtttttcagaactgaaatacaccggatttttcagtacacgtcaatcattcggaagcgaaaaaggcagtctgaatgaaagaatgcgccagattgtcagttccggaccctgtggcatcggatttgtcgttcctttcgacggaatagaaacaaacaaaacattaacagataataatacact Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 agtctcatctctttatggttaaagacggcaacctttccgcagaaaaaaacgcaaggcctaaattaaccccaactaccagaagagggtgtgtcaaaattcagtttcaagcagggggccgggatcatcgtttgtatagaaaaaccgctatcaaatcaatagtgtcctaaatgtttgcttagaggggggagtttttagtatgagagctgagtcgctccaatacaagacttttgggatttgagggggatccccctgcctacggaaagagctgattttgttcttccggcggaggcgaaaagggttcattgatccattggccttttcttacgtcgagctgacgtgaggttatcaatcgcatagaaactcgaaccgaaaatcgcccaaatctgaaaccaaaatcccccaaaaatggtgcgagaatcttttcgttctcaggcgagattttttcaactcccgaaccaaaataaaaattttctcagaccacgtttttcagaactgaaatacaccggatttttcagtacacgtcaatcattcggaagcgaaaaaggcagtctgaatgaaagaatgcgccagattgtcagttccggaccctgtggcatcggatttgtcgttcctttcgacggaatagaaacaaacaaaacattaacagataataatacact Predict ORF larger than 30AA ================================================ Protein_Len: 50 Strand: + Start: 15 End: 164 .............. M V K D G N L S A E K N A R P K L T P T T R R G C V K I Q F Q A G G R D H R L Y R K T A I K S I V S ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 39 Strand: + Start: 345 End: 461 ........................................................................................................................................................................................................................................................................................................................................................ M N R I E T R T E N R P N L K P K S P K N G A R I F S F S G E I F S T P E P K ...................................................................................................................................................................................................... Protein_Len: 33 Strand: + Start: 395 End: 493 .......................................................................................................................................................................................................................................................................................................................................................................................................... M P Q K W C E N L F V L R R D F F N S R T K I K I F S D H V F Q N ...................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 406 End: 657 ..................................................................................................................................................................................................................................................................................................................................................................................................................... M V R E S F R S Q A R F F Q L P N Q N K N F L R P R F S E L K Y T G F F S T R Q S F G S E K G S L N E R M R Q I V S S G .. Protein_Len: 37 Strand: - Start: 525 End: 635 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ D N P L S F P L R F S L I R W I T L E P G Q P M P N T T G K S P I S V F M ........................ Protein_Len: 40 Strand: - Start: 349 End: 468 ............................................................................................................................................................................................................................................................................................................................................................ D C L F E F R F D G L D S V L I G W F H H S F R K T R L R S K K L E R V L I F M ............................................................................................................................................................................................... Protein_Len: 35 Strand: - Start: 303 End: 407 .............................................................................................................................................................................................................................................................................................................. Q D M P R K K R R A S T L N D I A Y F S S G F I A W I Q F W F G G F M ............................................................................................................................................................................................................................................................ Protein_Len: 60 Strand: - Start: 257 End: 439 ................................................................................................................................................................................................................................................................ F L Q N Q E E P P P S F P E N I W Q G K R V D L Q R S T I L R M S V R V S F R G F R F G F D G L F P A L I K E N E P S M ............................................................................................................................................................................................................................ Protein_Len: 51 Strand: - Start: 151 End: 303 ...................................................................................................................................................... I L L T R F T Q K S P P T K L I L A S D S W Y L V K P I Q P P D G Q R R F S S I K N K R R L R F P N M .................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 30 Strand: - Start: 8 End: 97 ....... R K I T L S P L R E A S F F A L G L N V G V V L L P H T L M .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. agtctcatctctttatggttaaagacggcaacctttccgcagaaaaaaacgcaaggcctaaattaaccccaactaccagaagagggtgtgtcaaaattcagtttcaagcagggggccgggatcatcgtttgtatagaaaaaccgctatcaaatcaatagtgtcctaaatgtttgcttagaggggggagtttttagtatgagagctgagtcgctccaatacaagacttttgggatttgagggggatccccctgcctacggaaagagctgattttgttcttccggcggaggcgaaaagggttcattgatccattggccttttcttacgtcgagctgacgtgaggttatcaatcgcatagaaactcgaaccgaaaatcgcccaaatctgaaaccaaaatcccccaaaaatggtgcgagaatcttttcgttctcaggcgagattttttcaactcccgaaccaaaataaaaattttctcagaccacgtttttcagaactgaaatacaccggatttttcagtacacgtcaatcattcggaagcgaaaaaggcagtctgaatgaaagaatgcgccagattgtcagttccggaccctgtggcatcggatttgtcgttcctttcgacggaatagaaacaaacaaaacattaacagataataatacact Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ agtctcatctctttatggttaaagacggcaacctttccgcagaaaaaaacgcaaggcctaaattaaccccaactaccagaagagggtgtgtcaaaattcagtttcaagcagggggccgggatcatcgtttgtatagaaaaaccgctatcaaatcaatagtgtcctaaatgtttgcttagaggggggagtttttagtatgagagctgagtcgctccaatacaagacttttgggatttgagggggatccccctgcctacggaaagagctgattttgttcttccggcggaggcgaaaagggttcattgatccattggccttttcttacgtcgagctgacgtgaggttatcaatcgcatagaaactcgaaccgaaaatcgcccaaatctgaaaccaaaatcccccaaaaatggtgcgagaatcttttcgttctcaggcgagattttttcaactcccgaaccaaaataaaaattttctcagaccacgtttttcagaactgaaatacaccggatttttcagtacacgtcaatcattcggaagcgaaaaaggcagtctgaatgaaagaatgcgccagattgtcagttccggaccctgtggcatcggatttgtcgttcctttcgacggaatagaaacaaacaaaacattaacagataataatacact Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 77 HP_score: -4.4 Tail_Score: -5.0538 Start: 427 End: 438 Full_Region: CGAGAATCTTTTCGT TCTC AGGC GAGA TTTTTTCAACTCCCG ..........................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCAGGCGAGA............................................................................................................................................................................................................................. Find igs database================================================ Query_seq: PG0043:PG0045|PG0043:PG0045:beta-hexosaminidase:heat shock protein 90:->->:53540..54198 659 agtctcatctctttatggttaaagacggcaacctttccgcagaaaaaaacgcaaggcctaaattaaccccaactaccagaagagggtgtgtcaaaattcagtttcaagcagggggccgggatcatcgtttgtatagaaaaaccgctatcaaatcaatagtgtcctaaatgtttgcttagaggggggagtttttagtatgagagctgagtcgctccaatacaagacttttgggatttgagggggatccccctgcctacggaaagagctgattttgttcttccggcggaggcgaaaagggttcattgatccattggccttttcttacgtcgagctgacgtgaggttatcaatcgcatagaaactcgaaccgaaaatcgcccaaatctgaaaccaaaatcccccaaaaatggtgcgagaatcttttcgttctcaggcgagattttttcaactcccgaaccaaaataaaaattttctcagaccacgtttttcagaactgaaatacaccggatttttcagtacacgtcaatcattcggaagcgaaaaaggcagtctgaatgaaagaatgcgccagattgtcagttccggaccctgtggcatcggatttgtcgttcctttcgacggaatagaaacaaacaaaacattaacagataataatacact Intra-Species Hit: Count: 3 Min: 1 Max: 659 Len: 659 Subject: NC_002950_PG0043_PG0045|beta-hexosaminidase:heat shock protein 90|POSITIVE:POSITIVE|[53540,54198]|659 HSP 1 e-value: 0.0 bit: 1265.0 Len: 659 Query Start:1 Query End:659 Subject Strand: POSITIVE Subject Start: 1 Subject End: 659 agtctcatctctttatggttaaagacggcaacctttccgcagnnnnnnncgcaaggcctaaattaaccccaactaccagaagagggtgtgtcaaaattcagtttcaagcagggggccgggatcatcgtttgtatagaaaaaccgctatcaaatcaatagtgtcctaaatgtttgcttagaggggggagtttttagtatgagagctgagtcgctccaatacaagacttttgggatttgagggggatccccctgcctacggaaagagctgattttgttcttccggcggaggcgaaaagggttcattgatccattggccttttcttacgtcgagctgacgtgaggttatcaatcgcatagaaactcgaaccgaaaatcgcccaaatctgaaaccaaaatcccccaaaaatggtgcgagaatcttttcgttctcaggcgagattttttcaactcccgaaccaaaataaaaattttctcagaccacgtttttcagaactgaaatacaccggatttttcagtacacgtcaatcattcggaagcgaaaaaggcagtctgaatgaaagaatgcgccagattgtcagttccggaccctgtggcatcggatttgtcgttcctttcgacggaatagaaacaaacaaaacattaacagataataatacact agtctcatctctttatggttaaagacggcaacctttccgcagaaaaaaacgcaaggcctaaattaaccccaactaccagaagagggtgtgtcaaaattcagtttcaagcagggggccgggatcatcgtttgtatagaaaaaccgctatcaaatcaatagtgtcctaaatgtttgcttagaggggggagtttttagtatgagagctgagtcgctccaatacaagacttttgggatttgagggggatccccctgcctacggaaagagctgattttgttcttccggcggaggcgaaaagggttcattgatccattggccttttcttacgtcgagctgacgtgaggttatcaatcgcatagaaactcgaaccgaaaatcgcccaaatctgaaaccaaaatcccccaaaaatggtgcgagaatcttttcgttctcaggcgagattttttcaactcccgaaccaaaataaaaattttctcagaccacgtttttcagaactgaaatacaccggatttttcagtacacgtcaatcattcggaagcgaaaaaggcagtctgaatgaaagaatgcgccagattgtcagttccggaccctgtggcatcggatttgtcgttcctttcgacggaatagaaacaaacaaaacattaacagataataatacact Subject: NC_002950_PG0099_PG0100|phenylalanyl-tRNA synthetase beta subunit:hypothetical protein|NEGATIVE:NEGATIVE|[118377,119141]|765 HSP 1 e-value: 4.0E-41 bit: 170.0 Len: 158 Query Start:357 Query End:514 Subject Strand: NEGATIVE Subject Start: 195 Subject End: 351 ....................................................................................................................................................................................................................................................................................................................................................................gaaactcgaaccgaaaatcgcccaaatctgaaaccaaaatcccccaaaaatggtgcgagaatcttttcgttctcaggcgagattttttcaactcccgaaccaaaataaaaattttctcagaccacgtttttcagaactgaaatacaccggatttttca................................................................................................................................................. ....................................................................................................................................................................................................................................................................................................................................................................gaaactcgaaccgaaaatcgcccaaatctcaaaccaaaatcccaaaaaaatggcgcgagaatcttttcgttccggcgcgagattttttcaactcccgcgccaaaacaaaaatattctcagaccacgttttacag-cccgaaatacaccgaatttttca................................................................................................................................................. Subject: NC_002950_PG1626_PG1630|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1710547,1711911]|1365 HSP 1 e-value: 6.0E-40 bit: 167.0 Len: 124 Query Start:380 Query End:503 Subject Strand: NEGATIVE Subject Start: 13 Subject End: 136 ...........................................................................................................................................................................................................................................................................................................................................................................................aaatctgaaaccaaaatcccccaaaaatggtgcgagaatcttttcgttctcaggcgagattttttcaactcccgaaccaaaataaaaattttctcagaccacgtttttcagaactgaaatacac............................................................................................................................................................ ...........................................................................................................................................................................................................................................................................................................................................................................................aaatctcaaaccaaaatctccaaaaaatggcgcgagaatcttttcgttccggcgcgagattttttcaactcccgaaccaaaataaaaatcttctcagaccacgtttttcagaaccgaaatacac............................................................................................................................................................ Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AGUCUCAUCUCUUUAUGGUUAAAGACGGCAACCUUUCCGCAGAAAAAAACGCAAGGCCUAAAUUAACCCCAACUACCAGAAGAGGGUGUGUCAAAAUUCAGUUUCAAGCAGGGGGCCGGGAUCAUCGUUUGUAUAGAAAAACCGCUAUCAAAUCAAUAGUGUCCUAAAUGUUUGCUUAGAGGGGGGAGUUUUUAGUAUGAGAGCUGAGUCGCUCCAAUACAAGACUUUUGGGAUUUGAGGGGGAUCCCCCUGCCUACGGAAAGAGCUGAUUUUGUUCUUCCGGCGGAGGCGAAAAGGGUUCAUUGAUCCAUUGGCCUUUUCUUACGUCGAGCUGACGUGAGGUUAUCAAUCGCAUAGAAACUCGAACCGAAAAUCGCCCAAAUCUGAAACCAAAAUCCCCCAAAAAUGGUGCGAGAAUCUUUUCGUUCUCAGGCGAGAUUUUUUCAACUCCCGAACCAAAAUAAAAAUUUUCUCAGACCACGUUUUUCAGAACUGAAAUACACCGGAUUUUUCAGUACACGUCAAUCAUUCGGAAGCGAAAAAGGCAGUCUGAAUGAAAGAAUGCGCCAGAUUGUCAGUUCCGGACCCUGUGGCAUCGGAUUUGUCGUUCCUUUCGACGGAAUAGAAACAAACAAAACAUUAACAGAUAAUAAUACACU .((((....((((((....))))))......(..(((((..((((..((((((((.((.......(((((..(.....)..).))))....................((((((..(((((((.......(((((.((((((((((((.(((((...(((....)))...)))))..)))..(((..((((((((((((..((((......))))..))))......(((((((.(((((((((((....(((((...((((.((((.......))))))))))))).(((((....(((((..................(((((((((.....))))))))).......((.....)).....))))).....)))))................))))))).(((((..(((((((((......))))))..)))..))))).)))).)))))))......))))))))..))).......((.(((((....))))).))..))).)))))).))))).(.(((((.((((....))))...(((..(((.......)))....))).))))).).))))))).))))))......)).)))).))))..))))..)))))..)...................))))........... (-179.50) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AGUGUAUUAUUAUCUGUUAAUGUUUUGUUUGUUUCUAUUCCGUCGAAAGGAACGACAAAUCCGAUGCCACAGGGUCCGGAACUGACAAUCUGGCGCAUUCUUUCAUUCAGACUGCCUUUUUCGCUUCCGAAUGAUUGACGUGUACUGAAAAAUCCGGUGUAUUUCAGUUCUGAAAAACGUGGUCUGAGAAAAUUUUUAUUUUGGUUCGGGAGUUGAAAAAAUCUCGCCUGAGAACGAAAAGAUUCUCGCACCAUUUUUGGGGGAUUUUGGUUUCAGAUUUGGGCGAUUUUCGGUUCGAGUUUCUAUGCGAUUGAUAACCUCACGUCAGCUCGACGUAAGAAAAGGCCAAUGGAUCAAUGAACCCUUUUCGCCUCCGCCGGAAGAACAAAAUCAGCUCUUUCCGUAGGCAGGGGGAUCCCCCUCAAAUCCCAAAAGUCUUGUAUUGGAGCGACUCAGCUCUCAUACUAAAAACUCCCCCCUCUAAGCAAACAUUUAGGACACUAUUGAUUUGAUAGCGGUUUUUCUAUACAAACGAUGAUCCCGGCCCCCUGCUUGAAACUGAAUUUUGACACACCCUCUUCUGGUAGUUGGGGUUAAUUUAGGCCUUGCGUUUUUUUCUGCGGAAAGGUUGCCGUCUUUAACCAUAAAGAGAUGAGACU .....................((((..(((.(((...((((((.((((((((((.(((.............(((.((((....((..(((........((..((((((.((..((.......)).)).))))))..))..((((..((((((.(((.(((...(((((((((((....(((((.((((((..((((..((((.(..(((((.((....)).)))))..).))))..))))..)))))).)))))....((((((((((((.....(((((((((((.....((((((..((((((((((((((((........))))).))).))).))))).((((...)).))..))))))....))))).((..(((((((.(.......).)).)))))..)).(((((....))))))))))))))))).....((((.(((((......))))).)))).......)))))).............)))))))).....)))....))).)))))))))..))))...)))..)))))))))...(((((((....(((((..((..(((.......))).))..)))))..))))))).))))))))))))).)))))).(((((.......)))))..))).)))..)))). (-186.60) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 592 460 411 185 136 NC_002950:PG0081|5end_hypothetical_protein_93805..94035_POSITIVE 503 460 411 92 43 NC_002950:PG1980|5end_hypothetical_protein_2067930..2068160_NEGATIVE 488 460 411 92 43 NC_002950:PG0174|5end_pyridine_nucleotide-disulphide_oxidoreductase_family_protein_197628..197858_NEGATIVE 472 438 393 48 3 NC_002950:PG1799|5end_hypothetical_protein_1894499..1894729_POSITIVE 444 190 150 169 131 NC_002950:PG1792|5end_sodium/hydrogen_antiporter_1881622..1881852_POSITIVE 433 610 564 59 5 NC_002950:PG2163|5end_acid_phosphatase_2269571..2269801_NEGATIVE 413 320 275 84 36 NC_002950:PG1831|5end_ATP-dependent_DNA_helicase_RecQ_1925422..1925652_NEGATIVE 408 288 242 219 179 NC_002950:PG2101|5end_hypothetical_protein_2211273..2211503_NEGATIVE 404 460 411 56 5 NC_002950:PG2064|5end_hypothetical_protein_2160550..2160780_POSITIVE 404 546 508 137 94 NC_002950:PG1419|5end_ISPg5,_transposase_Orf1_1504997..1505227_POSITIVE 397 608 563 211 157 NC_002950:PG0339|5end_hypothetical_protein_375062..375292_POSITIVE 394 274 231 66 10 NC_002950:PG1897|5end_thiamin_pyrophosphokinase_catalytic_domain_protein_1996730..1996960_NEGATIVE 391 328 282 79 29 NC_002950:PG1490|5end_TraG_family_protein_1563415..1563645_POSITIVE 390 330 281 192 137 NC_002950:PG1497|5end_DNA-binding_protein,_histone-like_family_1574085..1574315_POSITIVE 384 320 279 197 150 NC_002950:PG1495|5end_DNA_topoisomerase_III_1571243..1571473_POSITIVE 380 268 221 104 56 NC_002950:PG0273|5end_4'-phosphopantetheinyl_transferase_family_protein_305694..305924_POSITIVE 374 315 275 67 13 NC_002950:PG1269|5end_delta-1-pyrroline-5-carboxylate_dehydrogenase_1349201..1349431_NEGATIVE 371 299 258 73 35 NC_002950:PG1648|5end_RelA/SpoT_family_protein_1727762..1727992_POSITIVE 367 265 227 231 189 NC_002950:PG0885|5end_phospho-2-dehydro-3-deoxyheptonate_aldolase/chorismate_mutase_947745..947975_POSITIVE 366 590 542 172 124 NC_002950:PG0060|5end_hypothetical_protein_71916..72146_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 780 490 441 65 16 NC_002950:PG1626|3end_hypothetical_protein_1710486..1710636_POSITIVE 572 310 261 144 95 NC_002950:PG2194|3end_ISPg4,_transposase_2300962..2301112_NEGATIVE 572 310 261 144 95 NC_002950:PG1673|3end_ISPg4,_transposase_1759625..1759775_POSITIVE 572 310 261 144 95 NC_002950:PG1658|3end_ISPg4,_transposase_1741747..1741897_NEGATIVE 572 310 261 144 95 NC_002950:PG1261|3end_ISPg4,_transposase_1339608..1339758_POSITIVE 572 310 261 144 95 NC_002950:PG0970|3end_ISPg4,_transposase_1030843..1030993_POSITIVE 572 310 261 144 95 NC_002950:PG0487|3end_ISPg4,_transposase_526276..526426_NEGATIVE 572 310 261 144 95 NC_002950:PG0225|3end_ISPg4,_transposase_258485..258635_NEGATIVE 572 310 261 144 95 NC_002950:PG0177|3end_ISPg4,_transposase_200324..200474_POSITIVE 572 310 261 144 95 NC_002950:PG0050|3end_ISPg4,_transposase_62153..62303_POSITIVE 572 310 261 144 95 NC_002950:PG0019|3end_ISPg4_transposase_23277..23427_POSITIVE 433 610 564 62 8 NC_002950:PG2164|3end_peptidyl-prolyl_cis-trans_isomerase,_FKBP-type_2269568..2269718_NEGATIVE 421 330 281 66 3 NC_002950:PG1854|3end_5-formyltetrahydrofolate_cyclo-ligase_family_protein_1953325..1953475_NEGATIVE 408 288 242 68 28 NC_002950:PG2102|3end_immunoreactive_61_kDa_antigen_PG91_2211424..2211574_NEGATIVE 394 274 231 69 13 NC_002950:PG1898|3end_transporter,_putative_1996727..1996877_NEGATIVE 391 328 282 77 27 NC_002950:PG1489|3end_hypothetical_protein_1563493..1563643_POSITIVE 386 298 253 120 68 NC_002950:PG1859|3end_glycerate_kinase_family_protein_1957174..1957324_NEGATIVE 386 550 504 96 45 NC_002950:PG1711|3end_alpha-1,2-mannosidase_family_protein_1796652..1796802_NEGATIVE 384 320 279 108 61 NC_002950:PG1494|3end_hypothetical_protein_1571234..1571384_POSITIVE 380 268 221 68 20 NC_002950:PG0272|3end_CBS_domain_protein_305738..305888_POSITIVE