Origin IGS: tttgcttataacggttattaggggggcttatagagatatatcctcattccctaagtattatgcagagagggtgtatcgaaaattgatttcggtacaccctcttctctttaacccagattggtcattagagattaacgtatagaatcaaggcattacttattactttcaaggaaaaagaattatgtccgaataagcatgtatttcacatcacccgattggtgagatgaaattgggatgctgatgtgatttctataagaaggtaagtggcagttattaagcagattacaaagaaaaatctctaatgacggccattagtttttttgaatgcaatccactttattccattaacataggctcttataaacttgaaggattaagcctaatttaggctcaccaattgttggttgagaccgggtaacacctctgcttgcaacaacttcccagtctttcttcaagacacgctcaataagcttgaggagaaaaaagtcggacttgttcgtgcgatagttgcttctgtaacaaacaggttatcgaatccttacaaaagcaaaagatccattatatcatcgctgcacgcttaacttcgacagttaaaatttgcctgcttcggttgtttgcagtagttgccgagaccgtgcaaaggcggaaaatagaattaaggagcttaacgatgatttttccatggatagcattatacagaaagactggtgggctactggagcgatgatcaatatggccgggcctataatctg .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 cagattataggcccggccatattgatcatcgctccagtagcccaccagtctttctgtataatgctatccatggaaaaatcatcgttaagctccttaattctattttccgcctttgcacggtctcggcaactactgcaaacaaccgaagcaggcaaattttaactgtcgaagttaagcgtgcagcgatgatataatggatcttttgcttttgtaaggattcgataacctgtttgttacagaagcaactatcgcacgaacaagtccgacttttttctcctcaagcttattgagcgtgtcttgaagaaagactgggaagttgttgcaagcagaggtgttacccggtctcaaccaacaattggtgagcctaaattaggcttaatccttcaagtttataagagcctatgttaatggaataaagtggattgcattcaaaaaaactaatggccgtcattagagatttttctttgtaatctgcttaataactgccacttaccttcttatagaaatcacatcagcatcccaatttcatctcaccaatcgggtgatgtgaaatacatgcttattcggacataattctttttccttgaaagtaataagtaatgccttgattctatacgttaatctctaatgaccaatctgggttaaagagaagagggtgtaccgaaatcaattttcgatacaccctctctgcataatacttagggaatgaggatatatctctataagcccccctaataaccgttataagcaaa Mask Tandem Repeat Region ================================================ tttgcttataacggttattaggggggcttatagagatatatcctcattccctaagtattatgcagagagggtgtatcgaaaattgatttcggtacaccctcttctctttaacccagattggtcattagagattaacgtatagaatcaaggcattacttattactttcaaggaaaaagaattatgtccgaataagcatgtatttcacatcacccgattggtgagatgaaattgggatgctgatgtgatttctataagaaggtaagtggcagttattaagcagattacaaagaaaaatctctaatgacggccattagtttttttgaatgcaatccactttattccattaacataggctcttataaacttgaaggattaagcctaatttaggctcaccaattgttggttgagaccgggtaacacctctgcttgcaacaacttcccagtctttcttcaagacacgctcaataagcttgaggagaaaaaagtcggacttgttcgtgcgatagttgcttctgtaacaaacaggttatcgaatccttacaaaagcaaaagatccattatatcatcgctgcacgcttaacttcgacagttaaaatttgcctgcttcggttgtttgcagtagttgccgagaccgtgcaaaggcggaaaatagaattaaggagcttaacgatgatttttccatggatagcattatacagaaagactggtgggctactggagcgatgatcaatatggccgggcctataatctg Find is-nt database================================================ Query_seq: PG0037:PG0039|PG0037:PG0039:50S ribosomal protein L19:hypothetical protein:->->:47025..47776 752 tttgcttataacggttattaggggggcttatagagatatatcctcattccctaagtattatgcagagagggtgtatcgaaaattgatttcggtacaccctcttctctttaacccagattggtcattagagattaacgtatagaatcaaggcattacttattactttcaaggaaaaagaattatgtccgaataagcatgtatttcacatcacccgattggtgagatgaaattgggatgctgatgtgatttctataagaaggtaagtggcagttattaagcagattacaaagaaaaatctctaatgacggccattagtttttttgaatgcaatccactttattccattaacataggctcttataaacttgaaggattaagcctaatttaggctcaccaattgttggttgagaccgggtaacacctctgcttgcaacaacttcccagtctttcttcaagacacgctcaataagcttgaggagaaaaaagtcggacttgttcgtgcgatagttgcttctgtaacaaacaggttatcgaatccttacaaaagcaaaagatccattatatcatcgctgcacgcttaacttcgacagttaaaatttgcctgcttcggttgtttgcagtagttgccgagaccgtgcaaaggcggaaaatagaattaaggagcttaacgatgatttttccatggatagcattatacagaaagactggtgggctactggagcgatgatcaatatggccgggcctataatctg Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PG0037:PG0039|PG0037:PG0039:50S ribosomal protein L19:hypothetical protein:->->:47025..47776 752 tttgcttataacggttattaggggggcttatagagatatatcctcattccctaagtattatgcagagagggtgtatcgaaaattgatttcggtacaccctcttctctttaacccagattggtcattagagattaacgtatagaatcaaggcattacttattactttcaaggaaaaagaattatgtccgaataagcatgtatttcacatcacccgattggtgagatgaaattgggatgctgatgtgatttctataagaaggtaagtggcagttattaagcagattacaaagaaaaatctctaatgacggccattagtttttttgaatgcaatccactttattccattaacataggctcttataaacttgaaggattaagcctaatttaggctcaccaattgttggttgagaccgggtaacacctctgcttgcaacaacttcccagtctttcttcaagacacgctcaataagcttgaggagaaaaaagtcggacttgttcgtgcgatagttgcttctgtaacaaacaggttatcgaatccttacaaaagcaaaagatccattatatcatcgctgcacgcttaacttcgacagttaaaatttgcctgcttcggttgtttgcagtagttgccgagaccgtgcaaaggcggaaaatagaattaaggagcttaacgatgatttttccatggatagcattatacagaaagactggtgggctactggagcgatgatcaatatggccgggcctataatctg Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PG0037:PG0039|PG0037:PG0039:50S ribosomal protein L19:hypothetical protein:->->:47025..47776 752 tttgcttataacggttattaggggggcttatagagatatatcctcattccctaagtattatgcagagagggtgtatcgaaaattgatttcggtacaccctcttctctttaacccagattggtcattagagattaacgtatagaatcaaggcattacttattactttcaaggaaaaagaattatgtccgaataagcatgtatttcacatcacccgattggtgagatgaaattgggatgctgatgtgatttctataagaaggtaagtggcagttattaagcagattacaaagaaaaatctctaatgacggccattagtttttttgaatgcaatccactttattccattaacataggctcttataaacttgaaggattaagcctaatttaggctcaccaattgttggttgagaccgggtaacacctctgcttgcaacaacttcccagtctttcttcaagacacgctcaataagcttgaggagaaaaaagtcggacttgttcgtgcgatagttgcttctgtaacaaacaggttatcgaatccttacaaaagcaaaagatccattatatcatcgctgcacgcttaacttcgacagttaaaatttgcctgcttcggttgtttgcagtagttgccgagaccgtgcaaaggcggaaaatagaattaaggagcttaacgatgatttttccatggatagcattatacagaaagactggtgggctactggagcgatgatcaatatggccgggcctataatctg Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 tttgcttataacggttattaggggggcttatagagatatatcctcattccctaagtattatgcagagagggtgtatcgaaaattgatttcggtacaccctcttctctttaacccagattggtcattagagattaacgtatagaatcaaggcattacttattactttcaaggaaaaagaattatgtccgaataagcatgtatttcacatcacccgattggtgagatgaaattgggatgctgatgtgatttctataagaaggtaagtggcagttattaagcagattacaaagaaaaatctctaatgacggccattagtttttttgaatgcaatccactttattccattaacataggctcttataaacttgaaggattaagcctaatttaggctcaccaattgttggttgagaccgggtaacacctctgcttgcaacaacttcccagtctttcttcaagacacgctcaataagcttgaggagaaaaaagtcggacttgttcgtgcgatagttgcttctgtaacaaacaggttatcgaatccttacaaaagcaaaagatccattatatcatcgctgcacgcttaacttcgacagttaaaatttgcctgcttcggttgtttgcagtagttgccgagaccgtgcaaaggcggaaaatagaattaaggagcttaacgatgatttttccatggatagcattatacagaaagactggtgggctactggagcgatgatcaatatggccgggcctataatctg Predict ORF larger than 30AA ================================================ Protein_Len: 46 Strand: + Start: 2 End: 139 . M L I T V I R G A Y R D I S S F P K Y Y A E R V Y R K L I S V H P L L F N P D W S L E I N V ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 58 Strand: + Start: 405 End: 578 .................................................................................................................................................................................................................................................................................................................................................................................................................... M R P G N T S A C N N F P V F L Q D T L N K L E E K K V G L V R A I V A S V T N R L S N P Y K S K R S I I S S L H A .............................................................................................................................................................................. Protein_Len: 60 Strand: + Start: 530 End: 724 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M E S L Q K Q K I H Y I I A A R L T S T V K I C L L R L F A V V A E T V Q R R K I E L R S L T M I F P W I A L Y R K T G ............................ Protein_Len: 51 Strand: + Start: 598 End: 750 ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M P A S V V C S S C R D R A K A E N R I K E L N D D F S M D S I I Q K D W W A T G A M I N M A G P I I .. Protein_Len: 52 Strand: - Start: 594 End: 749 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. F K G A E T T Q L L Q R S R A F A S F L I L S S L S S K E M S L M I C F S Q H A V P A I I L I A P G I M ... Protein_Len: 57 Strand: - Start: 562 End: 732 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. I M A A R K V E V T L I Q R S R N N A T T A S V T C L R F I S N L L K V I I K G H I A N Y L F V P P S S S R H D M .................... Protein_Len: 30 Strand: - Start: 466 End: 555 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Y A Q P S F L R V Q E H S L Q K Q L L C T I S D K C F C F M ..................................................................................................................................................................................................... Protein_Len: 40 Strand: - Start: 348 End: 467 ........................................................................................................................................................................................................................................................................................................................................................... C L S K Y V Q L I L G L K P E G I T P Q S R T V G R S A V V E W D K K L V R E M ............................................................................................................................................................................................................................................................................................. Protein_Len: 38 Strand: - Start: 183 End: 296 ...................................................................................................................................................................................... T R I L M Y K V D G S Q H S S I P I S I H N R Y S P L H C N N L L N C L F M ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ tttgcttataacggttattaggggggcttatagagatatatcctcattccctaagtattatgcagagagggtgtatcgaaaattgatttcggtacaccctcttctctttaacccagattggtcattagagattaacgtatagaatcaaggcattacttattactttcaaggaaaaagaattatgtccgaataagcatgtatttcacatcacccgattggtgagatgaaattgggatgctgatgtgatttctataagaaggtaagtggcagttattaagcagattacaaagaaaaatctctaatgacggccattagtttttttgaatgcaatccactttattccattaacataggctcttataaacttgaaggattaagcctaatttaggctcaccaattgttggttgagaccgggtaacacctctgcttgcaacaacttcccagtctttcttcaagacacgctcaataagcttgaggagaaaaaagtcggacttgttcgtgcgatagttgcttctgtaacaaacaggttatcgaatccttacaaaagcaaaagatccattatatcatcgctgcacgcttaacttcgacagttaaaatttgcctgcttcggttgtttgcagtagttgccgagaccgtgcaaaggcggaaaatagaattaaggagcttaacgatgatttttccatggatagcattatacagaaagactggtgggctactggagcgatgatcaatatggccgggcctataatctg Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ tttgcttataacggttattaggggggcttatagagatatatcctcattccctaagtattatgcagagagggtgtatcgaaaattgatttcggtacaccctcttctctttaacccagattggtcattagagattaacgtatagaatcaaggcattacttattactttcaaggaaaaagaattatgtccgaataagcatgtatttcacatcacccgattggtgagatgaaattgggatgctgatgtgatttctataagaaggtaagtggcagttattaagcagattacaaagaaaaatctctaatgacggccattagtttttttgaatgcaatccactttattccattaacataggctcttataaacttgaaggattaagcctaatttaggctcaccaattgttggttgagaccgggtaacacctctgcttgcaacaacttcccagtctttcttcaagacacgctcaataagcttgaggagaaaaaagtcggacttgttcgtgcgatagttgcttctgtaacaaacaggttatcgaatccttacaaaagcaaaagatccattatatcatcgctgcacgcttaacttcgacagttaaaatttgcctgcttcggttgtttgcagtagttgccgagaccgtgcaaaggcggaaaatagaattaaggagcttaacgatgatttttccatggatagcattatacagaaagactggtgggctactggagcgatgatcaatatggccgggcctataatctg Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 100 HP_score: -18.1 Tail_Score: -3.81488 Start: 67 End: 101 Full_Region: TAAGTATTATGCAGA GAGGGTGTATCGAAA ATTGA TTTCGGTACACCCTC TTCTCTTTAACCCAG ..................................................................GAGGGTGTATCGAAAATTGATTTCGGTACACCCTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 91 HP_score: -12.7 Tail_Score: -2.92642 Start: 69 End: 99 Full_Region: gggttaaagagaaga gggtgtaccgaaa tcaat tttcgatacaccc tctctgcataatact ....................................................................gggtgtaccgaaatcaattttcgatacaccc............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. TransTerm Strand: + Conf: 82 HP_score: -5.2 Tail_Score: -5.47218 Start: 299 End: 315 Full_Region: TACAAAGAAAAATCT CTAATG ACGGC CATTAG TTTTTTTGAATGCAA ..........................................................................................................................................................................................................................................................................................................CTAATGACGGCCATTAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................... Find igs database================================================ Query_seq: PG0037:PG0039|PG0037:PG0039:50S ribosomal protein L19:hypothetical protein:->->:47025..47776 752 tttgcttataacggttattaggggggcttatagagatatatcctcattccctaagtattatgcagagagggtgtatcgaaaattgatttcggtacaccctcttctctttaacccagattggtcattagagattaacgtatagaatcaaggcattacttattactttcaaggaaaaagaattatgtccgaataagcatgtatttcacatcacccgattggtgagatgaaattgggatgctgatgtgatttctataagaaggtaagtggcagttattaagcagattacaaagaaaaatctctaatgacggccattagtttttttgaatgcaatccactttattccattaacataggctcttataaacttgaaggattaagcctaatttaggctcaccaattgttggttgagaccgggtaacacctctgcttgcaacaacttcccagtctttcttcaagacacgctcaataagcttgaggagaaaaaagtcggacttgttcgtgcgatagttgcttctgtaacaaacaggttatcgaatccttacaaaagcaaaagatccattatatcatcgctgcacgcttaacttcgacagttaaaatttgcctgcttcggttgtttgcagtagttgccgagaccgtgcaaaggcggaaaatagaattaaggagcttaacgatgatttttccatggatagcattatacagaaagactggtgggctactggagcgatgatcaatatggccgggcctataatctg Intra-Species Hit: Count: 1 Min: 1 Max: 752 Len: 752 Subject: NC_002950_PG0037_PG0039|50S ribosomal protein L19:hypothetical protein|POSITIVE:POSITIVE|[47025,47776]|752 HSP 1 e-value: 0.0 bit: 1449.0 Len: 752 Query Start:1 Query End:752 Subject Strand: POSITIVE Subject Start: 1 Subject End: 752 tttgcttataacggttattaggggggcttatagagatatatcctcattccctaagtattatgcagagagggtgtatcgaaaattgatttcggtacaccctcttctctttaacccagattggtcattagagattaacgtatagaatcaaggcattacttattactttcaaggaaaaagaattatgtccgaataagcatgtatttcacatcacccgattggtgagatgaaattgggatgctgatgtgatttctataagaaggtaagtggcagttattaagcagattacaaagaaaaatctctaatgacggccattagnnnnnnngaatgcaatccactttattccattaacataggctcttataaacttgaaggattaagcctaatttaggctcaccaattgttggttgagaccgggtaacacctctgcttgcaacaacttcccagtctttcttcaagacacgctcaataagcttgaggagaaaaaagtcggacttgttcgtgcgatagttgcttctgtaacaaacaggttatcgaatccttacaaaagcaaaagatccattatatcatcgctgcacgcttaacttcgacagttaaaatttgcctgcttcggttgtttgcagtagttgccgagaccgtgcaaaggcggaaaatagaattaaggagcttaacgatgatttttccatggatagcattatacagaaagactggtgggctactggagcgatgatcaatatggccgggcctataatctg tttgcttataacggttattaggggggcttatagagatatatcctcattccctaagtattatgcagagagggtgtatcgaaaattgatttcggtacaccctcttctctttaacccagattggtcattagagattaacgtatagaatcaaggcattacttattactttcaaggaaaaagaattatgtccgaataagcatgtatttcacatcacccgattggtgagatgaaattgggatgctgatgtgatttctataagaaggtaagtggcagttattaagcagattacaaagaaaaatctctaatgacggccattagtttttttgaatgcaatccactttattccattaacataggctcttataaacttgaaggattaagcctaatttaggctcaccaattgttggttgagaccgggtaacacctctgcttgcaacaacttcccagtctttcttcaagacacgctcaataagcttgaggagaaaaaagtcggacttgttcgtgcgatagttgcttctgtaacaaacaggttatcgaatccttacaaaagcaaaagatccattatatcatcgctgcacgcttaacttcgacagttaaaatttgcctgcttcggttgtttgcagtagttgccgagaccgtgcaaaggcggaaaatagaattaaggagcttaacgatgatttttccatggatagcattatacagaaagactggtgggctactggagcgatgatcaatatggccgggcctataatctg Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UUUGCUUAUAACGGUUAUUAGGGGGGCUUAUAGAGAUAUAUCCUCAUUCCCUAAGUAUUAUGCAGAGAGGGUGUAUCGAAAAUUGAUUUCGGUACACCCUCUUCUCUUUAACCCAGAUUGGUCAUUAGAGAUUAACGUAUAGAAUCAAGGCAUUACUUAUUACUUUCAAGGAAAAAGAAUUAUGUCCGAAUAAGCAUGUAUUUCACAUCACCCGAUUGGUGAGAUGAAAUUGGGAUGCUGAUGUGAUUUCUAUAAGAAGGUAAGUGGCAGUUAUUAAGCAGAUUACAAAGAAAAAUCUCUAAUGACGGCCAUUAGUUUUUUUGAAUGCAAUCCACUUUAUUCCAUUAACAUAGGCUCUUAUAAACUUGAAGGAUUAAGCCUAAUUUAGGCUCACCAAUUGUUGGUUGAGACCGGGUAACACCUCUGCUUGCAACAACUUCCCAGUCUUUCUUCAAGACACGCUCAAUAAGCUUGAGGAGAAAAAAGUCGGACUUGUUCGUGCGAUAGUUGCUUCUGUAACAAACAGGUUAUCGAAUCCUUACAAAAGCAAAAGAUCCAUUAUAUCAUCGCUGCACGCUUAACUUCGACAGUUAAAAUUUGCCUGCUUCGGUUGUUUGCAGUAGUUGCCGAGACCGUGCAAAGGCGGAAAAUAGAAUUAAGGAGCUUAACGAUGAUUUUUCCAUGGAUAGCAUUAUACAGAAAGACUGGUGGGCUACUGGAGCGAUGAUCAAUAUGGCCGGGCCUAUAAUCUG .....(((((.(((((((((((((((..((((....))))..)))...))))).(.(((((((.(((((((((((((((((.....))))))))))))))))).........((((....(((((((((((((....((((((((((.(((((..(......(((....(((...(......).)))....))).....((((((..(((((.....)))))..)))))).)..)))))....))).))))))).....((((...((.........))...)))).......)))))))))))))(.((((((((((((((((((((.(((((........((((....(((((((((.....(((((....)))))..((((((.(((((((((.....))).)))).)).((((((....((((..(((((.......(((..((((((((((.(...........))))))))))).....((((((.(((..((((((....((((((.((((......(((.........))))))).))))))..(((.......))).....))))))..))).)))))).............))).....)))))..))))..))))))....((((......))))......)))))))))))))))..)))).........))))).)))))...))))))))))))))).)..)))).)).))))))...)))))))....))))).... (-217.43) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ CAGAUUAUAGGCCCGGCCAUAUUGAUCAUCGCUCCAGUAGCCCACCAGUCUUUCUGUAUAAUGCUAUCCAUGGAAAAAUCAUCGUUAAGCUCCUUAAUUCUAUUUUCCGCCUUUGCACGGUCUCGGCAACUACUGCAAACAACCGAAGCAGGCAAAUUUUAACUGUCGAAGUUAAGCGUGCAGCGAUGAUAUAAUGGAUCUUUUGCUUUUGUAAGGAUUCGAUAACCUGUUUGUUACAGAAGCAACUAUCGCACGAACAAGUCCGACUUUUUUCUCCUCAAGCUUAUUGAGCGUGUCUUGAAGAAAGACUGGGAAGUUGUUGCAAGCAGAGGUGUUACCCGGUCUCAACCAACAAUUGGUGAGCCUAAAUUAGGCUUAAUCCUUCAAGUUUAUAAGAGCCUAUGUUAAUGGAAUAAAGUGGAUUGCAUUCAAAAAAACUAAUGGCCGUCAUUAGAGAUUUUUCUUUGUAAUCUGCUUAAUAACUGCCACUUACCUUCUUAUAGAAAUCACAUCAGCAUCCCAAUUUCAUCUCACCAAUCGGGUGAUGUGAAAUACAUGCUUAUUCGGACAUAAUUCUUUUUCCUUGAAAGUAAUAAGUAAUGCCUUGAUUCUAUACGUUAAUCUCUAAUGACCAAUCUGGGUUAAAGAGAAGAGGGUGUACCGAAAUCAAUUUUCGAUACACCCUCUCUGCAUAAUACUUAGGGAAUGAGGAUAUAUCUCUAUAAGCCCCCCUAAUAACCGUUAUAAGCAAA .....(((((((.(.((((.((((............(((((((.(((((((((((......(((.((((((......(((((((((..((..................((((..((.((((....(((.....))).....))))..))))))....(((((((.....))))))).))..)))))))))...))))))...((((((((((((.((..((......)).)).)))))))))))).....)))....((((.(((...........(((((.....))))))).).)))).)))))))))))...(((......)))...)).)))))..(((....)))..))))))))(((((((...)))))))..................).))))))).((((((....(((..(((((((...(((((..((((((.....))))))...)))))...)))))))..)))...................((((((((..((..((.(((((....(((((((.(((((.....))))).)))))))..))))).))...))....((((((.(((((((..((((.((.(((......................(((((..(((((......))))).))))).(((((((((.(((((.....))))).)))))))))..))).)).))))))))))).)))))).....))))))))............))))))........ (-206.60) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 428 103 64 176 128 NC_002950:PG1281|5end_hypothetical_protein_1358848..1359078_POSITIVE 406 103 69 42 8 NC_002950:PG1968|5end_hypothetical_protein_2058564..2058794_NEGATIVE 397 648 603 199 158 NC_002950:PG1489|5end_hypothetical_protein_1562133..1562363_POSITIVE 387 649 601 181 128 NC_002950:PG1018|5end_hypothetical_protein_1078894..1079124_POSITIVE 384 646 601 187 136 NC_002950:PG1487|5end_hypothetical_protein_1561468..1561698_POSITIVE 381 649 603 78 29 NC_002950:PG1005|5end_lipoprotein,_putative_1063763..1063993_NEGATIVE 369 646 601 190 142 NC_002950:PG0359|5end_flavin_reductase_domain_protein_392851..393081_POSITIVE 368 646 603 197 156 NC_002950:PG2087|5end_hypothetical_protein_2186990..2187220_POSITIVE 365 742 704 160 125 NC_002950:PG0961|5end_hypothetical_protein_1022272..1022502_NEGATIVE 362 109 61 224 173 NC_002950:PG0323|5end_hypothetical_protein_357388..357618_NEGATIVE 360 646 601 214 159 NC_002950:PG1875|5end_hemolysin_1970621..1970851_NEGATIVE 358 648 606 208 157 NC_002950:PG1943|5end_hypothetical_protein_2030260..2030490_NEGATIVE 357 646 603 185 137 NC_002950:PG0201|5end_ribonuclease_P_238770..239000_NEGATIVE 356 646 601 116 70 NC_002950:PG0458|5end_ISPg5,_transposase_Orf2_501463..501693_NEGATIVE 355 646 601 204 153 NC_002950:PG1709|5end_ISPg5,_transposase_Orf1_1794914..1795144_POSITIVE 354 647 604 210 170 NC_002950:PG0757|5end_hypothetical_protein_806370..806600_NEGATIVE 354 645 601 178 135 NC_002950:PG0159|5end_endopeptidase_PepO_183164..183394_NEGATIVE 351 635 603 86 50 NC_002950:PG1608|5end_methylmalonyl-CoA_decarboxylase,_beta_subunit_1689836..1690066_NEGATIVE 349 644 601 222 178 NC_002950:PG1556|5end_hypothetical_protein_1636595..1636825_POSITIVE 348 457 419 63 22 NC_002950:PG1042|5end_glycogen_synthase,_putative_1110638..1110868_NEGATIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 472 108 64 79 25 NC_002950:PG0618|3end_alkyl_hydroperoxide_reductase,_C_subunit_671018..671168_POSITIVE 428 103 64 49 1 NC_002950:PG1280|3end_hypothetical_protein_1358801..1358951_POSITIVE 406 103 69 146 112 NC_002950:PG1968|3end_hypothetical_protein_2058460..2058610_NEGATIVE 387 649 601 151 98 NC_002950:PG1017|3end_pyruvate_phosphate_dikinase_1078944..1079094_POSITIVE 387 107 62 60 10 NC_002950:PG0553|3end_extracellular_protease,_putative_608367..608517_NEGATIVE 366 103 64 68 23 NC_002950:PG0726|3end_lipoprotein,_putative_778003..778153_NEGATIVE 365 107 64 62 17 NC_002950:PG1949|3end_malate_dehydrogenase_2038184..2038334_NEGATIVE 365 742 704 105 70 NC_002950:PG0962|3end_prolyl-tRNA_synthetase_1022327..1022477_NEGATIVE 359 105 64 42 4 NC_002950:PG1297|3end_ribosomal_protein_S1_1377710..1377860_POSITIVE 356 646 601 62 16 NC_002950:PG0459|3end_ISPg5,_transposase_Orf1_501517..501667_NEGATIVE 354 647 604 113 73 NC_002950:PG0758|3end_peptidyl-dipeptidase_Dcp_806467..806617_NEGATIVE 351 635 603 81 45 NC_002950:PG1609|3end_methylmalonyl-CoA_decarboxylase,_gamma_subunit_1689841..1689991_NEGATIVE 351 107 64 71 34 NC_002950:PG0308|3end_electron_transport_complex,_RnfABCDGE_type,_A_subunit_343827..343977_POSITIVE 350 647 602 90 54 NC_002950:PG1975|3end_hemagglutinin_protein_HagC_2064350..2064500_POSITIVE 348 649 609 131 83 NC_002950:PG0028|3end_2C-methyl-D-erythritol_2,4-cyclodiphosphate_synthase_34431..34581_POSITIVE 346 645 602 114 68 NC_002950:PG1759|3end_adhesion_protein,_putative_1846597..1846747_POSITIVE 342 108 66 68 20 NC_002950:PG1414|3end_hypothetical_protein_1499704..1499854_POSITIVE 338 645 602 133 97 NC_002950:PG1181|3end_transcriptional_regulator,_tetR_family_1263656..1263806_NEGATIVE 338 743 705 130 87 NC_002950:PG0897|3end_alpha-amylase_family_protein_960868..961018_NEGATIVE 334 646 602 52 4 NC_002950:PG1581|3end_hypothetical_protein_1659404..1659554_POSITIVE