Origin IGS: ttcgcctataaattttactgttttacgaacgaaggtaatcaatacgtatgagacctttcggcaataagcaggcactttgatccattcattttacagtgtgtcggccgattgttttgtgtgcttatggtatgatcaatgacacaaaacgatggcacgacggggaaaatcatccgacgaagaggtctcattcagggacgtcatgtcagcgaatcgatacaggaaagcccggaatgtatttttgacccaagtcgatatgcttacatgagaggatactatggtctattgatggaagatgctatctgctctgtgtcggatggcaggttcggggagagggaggttccgtgcgagctgtaaaaccgatagatgagattgtcgcacggcattttccgggagatttcattgtcaattgactgtttttcagtgtctgtatatagatataaatagtatcaaaagtaaccgatacaggctatggttcggaggaaaactgccatttgatacagcagatagactgagagacttgtatcaatcctcaatcttagcctgatttgcttcgacgtcttcgaaaagctaataaagtagggtttccatgatgaagccggttgcctaaccgactgtaaggagcaaagaaagagggctgtgacaaaaccgaattttgacacagcccctttcttttggaatgccaataccgacttaa .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 ttaagtcggtattggcattccaaaagaaaggggctgtgtcaaaattcggttttgtcacagccctctttctttgctccttacagtcggttaggcaaccggcttcatcatggaaaccctactttattagcttttcgaagacgtcgaagcaaatcaggctaagattgaggattgatacaagtctctcagtctatctgctgtatcaaatggcagttttcctccgaaccatagcctgtatcggttacttttgatactatttatatctatatacagacactgaaaaacagtcaattgacaatgaaatctcccggaaaatgccgtgcgacaatctcatctatcggttttacagctcgcacggaacctccctctccccgaacctgccatccgacacagagcagatagcatcttccatcaatagaccatagtatcctctcatgtaagcatatcgacttgggtcaaaaatacattccgggctttcctgtatcgattcgctgacatgacgtccctgaatgagacctcttcgtcggatgattttccccgtcgtgccatcgttttgtgtcattgatcataccataagcacacaaaacaatcggccgacacactgtaaaatgaatggatcaaagtgcctgcttattgccgaaaggtctcatacgtattgattaccttcgttcgtaaaacagtaaaatttataggcgaa Mask Tandem Repeat Region ================================================ ttcgcctataaattttactgttttacgaacgaaggtaatcaatacgtatgagacctttcggcaataagcaggcactttgatccattcattttacagtgtgtcggccgattgttttgtgtgcttatggtatgatcaatgacacaaaacgatggcacgacggggaaaatcatccgacgaagaggtctcattcagggacgtcatgtcagcgaatcgatacaggaaagcccggaatgtatttttgacccaagtcgatatgcttacatgagaggatactatggtctattgatggaagatgctatctgctctgtgtcggatggcaggttcggggagagggaggttccgtgcgagctgtaaaaccgatagatgagattgtcgcacggcattttccgggagatttcattgtcaattgactgtttttcagtgtctgtatatagatataaatagtatcaaaagtaaccgatacaggctatggttcggaggaaaactgccatttgatacagcagatagactgagagacttgtatcaatcctcaatcttagcctgatttgcttcgacgtcttcgaaaagctaataaagtagggtttccatgatgaagccggttgcctaaccgactgtaaggagcaaagaaagagggctgtgacaaaaccgaattttgacacagcccctttcttttggaatgccaataccgacttaa Find is-nt database================================================ Query_seq: PG0033:PG0034|PG0033:PG0034:RmuC domain protein:thioredoxin:<-<-:41631..42324 694 ttcgcctataaattttactgttttacgaacgaaggtaatcaatacgtatgagacctttcggcaataagcaggcactttgatccattcattttacagtgtgtcggccgattgttttgtgtgcttatggtatgatcaatgacacaaaacgatggcacgacggggaaaatcatccgacgaagaggtctcattcagggacgtcatgtcagcgaatcgatacaggaaagcccggaatgtatttttgacccaagtcgatatgcttacatgagaggatactatggtctattgatggaagatgctatctgctctgtgtcggatggcaggttcggggagagggaggttccgtgcgagctgtaaaaccgatagatgagattgtcgcacggcattttccgggagatttcattgtcaattgactgtttttcagtgtctgtatatagatataaatagtatcaaaagtaaccgatacaggctatggttcggaggaaaactgccatttgatacagcagatagactgagagacttgtatcaatcctcaatcttagcctgatttgcttcgacgtcttcgaaaagctaataaagtagggtttccatgatgaagccggttgcctaaccgactgtaaggagcaaagaaagagggctgtgacaaaaccgaattttgacacagcccctttcttttggaatgccaataccgacttaa Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PG0033:PG0034|PG0033:PG0034:RmuC domain protein:thioredoxin:<-<-:41631..42324 694 ttcgcctataaattttactgttttacgaacgaaggtaatcaatacgtatgagacctttcggcaataagcaggcactttgatccattcattttacagtgtgtcggccgattgttttgtgtgcttatggtatgatcaatgacacaaaacgatggcacgacggggaaaatcatccgacgaagaggtctcattcagggacgtcatgtcagcgaatcgatacaggaaagcccggaatgtatttttgacccaagtcgatatgcttacatgagaggatactatggtctattgatggaagatgctatctgctctgtgtcggatggcaggttcggggagagggaggttccgtgcgagctgtaaaaccgatagatgagattgtcgcacggcattttccgggagatttcattgtcaattgactgtttttcagtgtctgtatatagatataaatagtatcaaaagtaaccgatacaggctatggttcggaggaaaactgccatttgatacagcagatagactgagagacttgtatcaatcctcaatcttagcctgatttgcttcgacgtcttcgaaaagctaataaagtagggtttccatgatgaagccggttgcctaaccgactgtaaggagcaaagaaagagggctgtgacaaaaccgaattttgacacagcccctttcttttggaatgccaataccgacttaa Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PG0033:PG0034|PG0033:PG0034:RmuC domain protein:thioredoxin:<-<-:41631..42324 694 ttcgcctataaattttactgttttacgaacgaaggtaatcaatacgtatgagacctttcggcaataagcaggcactttgatccattcattttacagtgtgtcggccgattgttttgtgtgcttatggtatgatcaatgacacaaaacgatggcacgacggggaaaatcatccgacgaagaggtctcattcagggacgtcatgtcagcgaatcgatacaggaaagcccggaatgtatttttgacccaagtcgatatgcttacatgagaggatactatggtctattgatggaagatgctatctgctctgtgtcggatggcaggttcggggagagggaggttccgtgcgagctgtaaaaccgatagatgagattgtcgcacggcattttccgggagatttcattgtcaattgactgtttttcagtgtctgtatatagatataaatagtatcaaaagtaaccgatacaggctatggttcggaggaaaactgccatttgatacagcagatagactgagagacttgtatcaatcctcaatcttagcctgatttgcttcgacgtcttcgaaaagctaataaagtagggtttccatgatgaagccggttgcctaaccgactgtaaggagcaaagaaagagggctgtgacaaaaccgaattttgacacagcccctttcttttggaatgccaataccgacttaa Intra-Species Hit: Count: 0 Inter-species Hit: Count: 3 Min: 48 Max: 407 Len: 360 Subject: UniRef90_Q7MWU3 Cluster: Hypothetical protein; n=1; Porphyromonas gingivalis|Rep: Hypothetical protein - Porphyromonas gingivalis (Bacteroides gingivalis) HSP 1 e-value: 2.0E-26 bit: 73.2 Len: 111 Query Start:175 Query End:285 Subject Strand: null Subject Start: 54 Subject End: 90 .............................................................................................................................................................................. R R G L I Q G R H V S E S I Q E S P E C I F D P S R Y A Y M R G Y Y G L L ......................................................................................................................................................................................................................................................................................................................................................................................................................... .............................................................................................................................................................................. R R G F I Q G R H A S E S I R E S T E C I F D P S R Y A Y M R G Y Y G L L ......................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 2.0E-26 bit: 69.3 Len: 135 Query Start:48 Query End:182 Subject Strand: null Subject Start: 11 Subject End: 55 ............................................... M R P F G N K Q A L * S I H F T V C R P I V L C A Y G M I N D T K R W H D G E N H P T K R ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ ............................................... M E T F A Q Q A G I L S I H F I V Y R P I V L C V Y G M I N D T K R W Y D K E N H P T R R ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Subject: UniRef90_Q7MUR7 Cluster: Hypothetical protein; n=2; Porphyromonas gingivalis|Rep: Hypothetical protein - Porphyromonas gingivalis (Bacteroides gingivalis) HSP 1 e-value: 3.0E-19 bit: 97.8 Len: 147 Query Start:261 Query End:407 Subject Strand: null Subject Start: 4 Subject End: 52 .................................................................................................................................................................................................................................................................... H E R I L W S I D G R C Y L L C V G W Q V R G E G G S V R A V K P I D E I V A R H F P G D F I V N ............................................................................................................................................................................................................................................................................................... .................................................................................................................................................................................................................................................................... Y E R I L W S I D G R C Y L L C V G W Q D R G V G G S V R A V K P I D K T V A R H F P G D F I V N ............................................................................................................................................................................................................................................................................................... Subject: UniRef90_Q7MWU4 Cluster: Hypothetical protein; n=1; Porphyromonas gingivalis|Rep: Hypothetical protein - Porphyromonas gingivalis (Bacteroides gingivalis) HSP 1 e-value: 5.0E-19 bit: 97.1 Len: 147 Query Start:261 Query End:407 Subject Strand: null Subject Start: 4 Subject End: 52 .................................................................................................................................................................................................................................................................... H E R I L W S I D G R C Y L L C V G W Q V R G E G G S V R A V K P I D E I V A R H F P G D F I V N ............................................................................................................................................................................................................................................................................................... .................................................................................................................................................................................................................................................................... H E R V L W S I D G R C Y L L S A G W Q I R G V G G S V R A V K P I D E I V A W H F P G D F I V N ............................................................................................................................................................................................................................................................................................... ttcgcctataaattttactgttttacgaacgaaggtaatcaatacgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgactgtttttcagtgtctgtatatagatataaatagtatcaaaagtaaccgatacaggctatggttcggaggaaaactgccatttgatacagcagatagactgagagacttgtatcaatcctcaatcttagcctgatttgcttcgacgtcttcgaaaagctaataaagtagggtttccatgatgaagccggttgcctaaccgactgtaaggagcaaagaaagagggctgtgacaaaaccgaattttgacacagcccctttcttttggaatgccaataccgacttaa Predict ORF larger than 30AA ================================================ Protein_Len: 52 Strand: + Start: 84 End: 239 ................................................................................... M H F T V C R P I V L C A Y G M I N D T K R W H D G E N H P T K R S H S G T S C Q R I D T G K P G M Y F ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 38 Strand: + Start: 149 End: 262 .................................................................................................................................................... M A R R G K S S D E E V S F R D V M S A N R Y R K A R N V F L T Q V D M L T ................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 60 Strand: + Start: 136 End: 351 ....................................................................................................................................... M T Q N D G T T G K I I R R R G L I Q G R H V S E S I Q E S P E C I F D P S R Y A Y M R G Y Y G L L M E D A I C S V S D ....................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 52 Strand: + Start: 252 End: 407 ........................................................................................................................................................................................................................................................... M C L H E R I L W S I D G R C Y L L C V G W Q V R G E G G S V R A V K P I D E I V A R H F P G D F I V N ............................................................................................................................................................................................................................................................................................... Protein_Len: 45 Strand: + Start: 407 End: 541 ...................................................................................................................................................................................................................................................................................................................................................................................................................... M T V F Q C L Y I D I N S I K S N R Y R L W F G G K L P F D T A D R L R D L Y Q S S I L A ......................................................................................................................................................... Protein_Len: 41 Strand: - Start: 539 End: 661 .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... G S K S R R R R F A L L T P N G H H L R N G L R S Y P A F F S P Q S L V S N Q C M ................................. Protein_Len: 60 Strand: - Start: 450 End: 683 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Y V S L S T D I R L R L R I Q K S T K S F S I F Y P K W S S A P Q R V S Q L S C L F L A T V F G F K S V A G K K Q F A M ........... Protein_Len: 48 Strand: - Start: 299 End: 442 .......................................................................................................................................................................................................................................................................................................... R S Q T P H C T R P S P P E T R A T F G I S S I T A R C K G P S K M T L Q S N K L T Q I Y I Y M ............................................................................................................................................................................................................................................................ Protein_Len: 32 Strand: - Start: 283 End: 378 .......................................................................................................................................................................................................................................................................................... Q H F I S D A R H R I A P E P L P L N R A L Q L V S L H S Q R M ............................................................................................................................................................................................................................................................................................................................ Protein_Len: 44 Strand: - Start: 276 End: 407 ................................................................................................................................................................................................................................................................................... P R N I S S A I Q E T D S P L N P S L S T G H S S Y F R Y I L N D C P M K R S I E N D M ............................................................................................................................................................................................................................................................................................... Protein_Len: 47 Strand: - Start: 136 End: 276 ....................................................................................................................................... H C L V I A R R P F D D S S S T E N L S T M D A F R Y L F A R F T N K V W T S I S V H S S V M .................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 49 Strand: - Start: 42 End: 188 ......................................... Y T H S R E A I L L C K S G N M K C H T P R N N Q T S I T H D I V C F S P V V P F I M R R L P R M .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ttcgcctataaattttactgttttacgaacgaaggtaatcaatacgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgactgtttttcagtgtctgtatatagatataaatagtatcaaaagtaaccgatacaggctatggttcggaggaaaactgccatttgatacagcagatagactgagagacttgtatcaatcctcaatcttagcctgatttgcttcgacgtcttcgaaaagctaataaagtagggtttccatgatgaagccggttgcctaaccgactgtaaggagcaaagaaagagggctgtgacaaaaccgaattttgacacagcccctttcttttggaatgccaataccgacttaa Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ ttcgcctataaattttactgttttacgaacgaaggtaatcaatacgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgactgtttttcagtgtctgtatatagatataaatagtatcaaaagtaaccgatacaggctatggttcggaggaaaactgccatttgatacagcagatagactgagagacttgtatcaatcctcaatcttagcctgatttgcttcgacgtcttcgaaaagctaataaagtagggtttccatgatgaagccggttgcctaaccgactgtaaggagcaaagaaagagggctgtgacaaaaccgaattttgacacagcccctttcttttggaatgccaataccgacttaa Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 100 HP_score: -16.3 Tail_Score: -4.13945 Start: 626 End: 669 Full_Region: ACTGTAAGGAGCAAA GAAAGAGGGCTGTGACAAAA CCGAA TTTTGACACAGCCCCTTTC TTTTGGAATGCCAAT .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGAGGGCTGTGACAAAACCGAATTTTGACACAGCCCCTTTC......................... TransTerm Strand: - Conf: 100 HP_score: -17.0 Tail_Score: -3.84514 Start: 626 End: 669 Full_Region: attggcattccaaaa gaaaggggctgtgtcaaaat tcg gttttgtcacagccctctttc tttgctccttacagt .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gaaaggggctgtgtcaaaattcggttttgtcacagccctctttc......................... TransTerm Strand: - Conf: 100 HP_score: -12.0 Tail_Score: -4.53349 Start: 630 End: 665 Full_Region: gcattccaaaagaaa ggggctgtgtcaaaat tcg gttttgtcacagccctc tttctttgctcctta .....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ggggctgtgtcaaaattcggttttgtcacagccctc............................. TransTerm Strand: + Conf: 100 HP_score: -11.5 Tail_Score: -4.67048 Start: 631 End: 665 Full_Region: AAGGAGCAAAGAAAG AGGGCTGTGACAAAA CCGAA TTTTGACACAGCCCC TTTCTTTTGGAATGC ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGCTGTGACAAAACCGAATTTTGACACAGCCCC............................. TransTerm Strand: - Conf: 100 HP_score: -15.7 Tail_Score: -3.86206 Start: 632 End: 664 Full_Region: cattccaaaagaaag gggctgtgtcaaaat tcg gttttgtcacagccc tctttctttgctcct .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gggctgtgtcaaaattcggttttgtcacagccc.............................. Find igs database================================================ Query_seq: PG0033:PG0034|PG0033:PG0034:RmuC domain protein:thioredoxin:<-<-:41631..42324 694 ttcgcctataaattttactgttttacgaacgaaggtaatcaatacgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgactgtttttcagtgtctgtatatagatataaatagtatcaaaagtaaccgatacaggctatggttcggaggaaaactgccatttgatacagcagatagactgagagacttgtatcaatcctcaatcttagcctgatttgcttcgacgtcttcgaaaagctaataaagtagggtttccatgatgaagccggttgcctaaccgactgtaaggagcaaagaaagagggctgtgacaaaaccgaattttgacacagcccctttcttttggaatgccaataccgacttaa Intra-Species Hit: Count: 2 Min: 1 Max: 694 Len: 694 Subject: NC_002950_PG0033_PG0034|RmuC domain protein:thioredoxin|NEGATIVE:NEGATIVE|[41631,42324]|694 HSP 1 e-value: 1.0E-161 bit: 569.0 Len: 287 Query Start:408 Query End:694 Subject Strand: POSITIVE Subject Start: 408 Subject End: 694 .......................................................................................................................................................................................................................................................................................................................................................................................................................tgactgtttttcagtgtctgtatatagatataaatagtatcaaaagtaaccgatacaggctatggttcggaggaaaactgccatttgatacagcagatagactgagagacttgtatcaatcctcaatcttagcctgatttgcttcgacgtcttcgaaaagctaataaagtagggtttccatgatgaagccggttgcctaaccgactgtaaggagcaaagaaagagggctgtgacaaaaccgaattttgacacagcccctttcttttggaatgccaataccgacttaa .......................................................................................................................................................................................................................................................................................................................................................................................................................tgactgtttttcagtgtctgtatatagatataaatagtatcaaaagtaaccgatacaggctatggttcggaggaaaactgccatttgatacagcagatagactgagagacttgtatcaatcctcaatcttagcctgatttgcttcgacgtcttcgaaaagctaataaagtagggtttccatgatgaagccggttgcctaaccgactgtaaggagcaaagaaagagggctgtgacaaaaccgaattttgacacagcccctttcttttggaatgccaataccgacttaa HSP 2 e-value: 8.0E-18 bit: 93.7 Len: 47 Query Start:1 Query End:47 Subject Strand: POSITIVE Subject Start: 1 Subject End: 47 ttcgcctataaattttactgttttacgaacgaaggtaatcaatacgt....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ttcgcctataaattttactgttttacgaacgaaggtaatcaatacgt....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: NC_002950_PG1714_PG1715|pyridoxamine-phosphate oxidase:hypothetical protein|NEGATIVE:NEGATIVE|[1802583,1803482]|900 HSP 1 e-value: 5.0E-47 bit: 190.0 Len: 136 Query Start:531 Query End:666 Subject Strand: POSITIVE Subject Start: 705 Subject End: 840 ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................caatcttagcctgatttgcttcgacgtcttcgaaaagctaataaagtagggtttccatgatgaagccggttgcctaaccgactgtaaggagcaaagaaagagggctgtgacaaaaccgaattttgacacagcccct............................ ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................caatcttagcctgattcgcttctatgtcttcgaaaagctaataaagtagggcctccaagatgaagccggttgcctaaccgactgcaaggagcaaagaaagagggctgcgacaaaatcaaattttgacacagcccct............................ Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UUCGCCUAUAAAUUUUACUGUUUUACGAACGAAGGUAAUCAAUACGUAUGAGACCUUUCGGCAAUAAGCAGGCACUUUGAUCCAUUCAUUUUACAGUGUGUCGGCCGAUUGUUUUGUGUGCUUAUGGUAUGAUCAAUGACACAAAACGAUGGCACGACGGGGAAAAUCAUCCGACGAAGAGGUCUCAUUCAGGGACGUCAUGUCAGCGAAUCGAUACAGGAAAGCCCGGAAUGUAUUUUUGACCCAAGUCGAUAUGCUUACAUGAGAGGAUACUAUGGUCUAUUGAUGGAAGAUGCUAUCUGCUCUGUGUCGGAUGGCAGGUUCGGGGAGAGGGAGGUUCCGUGCGAGCUGUAAAACCGAUAGAUGAGAUUGUCGCACGGCAUUUUCCGGGAGAUUUCAUUGUCAAUUGACUGUUUUUCAGUGUCUGUAUAUAGAUAUAAAUAGUAUCAAAAGUAACCGAUACAGGCUAUGGUUCGGAGGAAAACUGCCAUUUGAUACAGCAGAUAGACUGAGAGACUUGUAUCAAUCCUCAAUCUUAGCCUGAUUUGCUUCGACGUCUUCGAAAAGCUAAUAAAGUAGGGUUUCCAUGAUGAAGCCGGUUGCCUAACCGACUGUAAGGAGCAAAGAAAGAGGGCUGUGACAAAACCGAAUUUUGACACAGCCCCUUUCUUUUGGAAUGCCAAUACCGACUUAA ((((.((((...((((((.((.....((((....))..))....((((((..((((..(.((.....)).....((((((.((.............(.((((((((.((((((((((((.(...((((...))))..)))))))))))))))).))))).).....((((((((((.(((((((((.....))))).((((((.((((.((((((...((....))(((((.....)))))......)))))).)))).))))))..(((((.(((..((((....))))..))).))))).)))).))))))))))..)).))))))...)..))))..)))))).)).))))))...)))).))))...((((...(((((((((((..((((.(((........)))..))))..).(((((((....)))))))..(((((.......(((((((...(((((((.(((...(((((..........((((((((((((.....)))......)))))))))))))).))).)))))))....((((((.(((....((((..(((......)))..)))).))).))))))))))))).......)))))..)))..((((((((.((((((((.(((((.....))))).))))))))))))))))..))))))).....)))).... (-217.14) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UUAAGUCGGUAUUGGCAUUCCAAAAGAAAGGGGCUGUGUCAAAAUUCGGUUUUGUCACAGCCCUCUUUCUUUGCUCCUUACAGUCGGUUAGGCAACCGGCUUCAUCAUGGAAACCCUACUUUAUUAGCUUUUCGAAGACGUCGAAGCAAAUCAGGCUAAGAUUGAGGAUUGAUACAAGUCUCUCAGUCUAUCUGCUGUAUCAAAUGGCAGUUUUCCUCCGAACCAUAGCCUGUAUCGGUUACUUUUGAUACUAUUUAUAUCUAUAUACAGACACUGAAAAACAGUCAAUUGACAAUGAAAUCUCCCGGAAAAUGCCGUGCGACAAUCUCAUCUAUCGGUUUUACAGCUCGCACGGAACCUCCCUCUCCCCGAACCUGCCAUCCGACACAGAGCAGAUAGCAUCUUCCAUCAAUAGACCAUAGUAUCCUCUCAUGUAAGCAUAUCGACUUGGGUCAAAAAUACAUUCCGGGCUUUCCUGUAUCGAUUCGCUGACAUGACGUCCCUGAAUGAGACCUCUUCGUCGGAUGAUUUUCCCCGUCGUGCCAUCGUUUUGUGUCAUUGAUCAUACCAUAAGCACACAAAACAAUCGGCCGACACACUGUAAAAUGAAUGGAUCAAAGUGCCUGCUUAUUGCCGAAAGGUCUCAUACGUAUUGAUUACCUUCGUUCGUAAAACAGUAAAAUUUAUAGGCGAA .....((((((..(((.(((((((((((((((((((((.((((((...)))))).)))))))).)))))))).........((((((((....))))))))......)))))..............(((..((((.....)))))))....(((((((((((((((((((......)))).))))))))..(((((((.....)))))))...............)))))))....(((.(((((.(((.((((((((.......(((((.....(((((.((((.((((((.(..((((...(((((((....((((((((.......(((....)))........))))))))...............(((..(((.(((.(........).))).)))..)))........((((..(((........(((....)))....)))..)))).........))))))).))))...).)))))).))))......(((((.((((.((....))))))..))))).)))))...((((.(((((.((((((((((..((.......))...).))))))))).)).)))))))...)))))..))))))))))))))))))).)))...)))))).((((.(((.......)))..))))((((..(((((.........)))))..)))). (-194.96) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 921 110 61 201 152 NC_002950:PG0033|5end_RmuC_domain_protein_41540..41770_NEGATIVE 640 110 61 224 166 NC_002950:PG0267|5end_arginyl-tRNA_synthetase_299100..299330_POSITIVE 611 106 61 231 179 NC_002950:PG1714|5end_pyridoxamine-phosphate_oxidase_1802492..1802722_NEGATIVE 547 350 302 206 146 NC_002950:PG1305|5end_glycine_dehydrogenase_1386538..1386768_NEGATIVE 509 338 292 161 119 NC_002950:PG0877|5end_hypothetical_protein_941545..941775_NEGATIVE 499 299 253 200 152 NC_002950:PG1391|5end_hypothetical_protein_1471670..1471900_POSITIVE 475 664 622 225 181 NC_002950:PG0749|5end_hypothetical_protein_795654..795884_NEGATIVE 473 299 253 194 146 NC_002950:PG0197|5end_hypothetical_protein_236204..236434_NEGATIVE 429 349 304 206 152 NC_002950:PG1387|5end_hypothetical_protein_1470058..1470288_NEGATIVE 429 350 301 202 151 NC_002950:PG0638|5end_tetraacyldisaccharide_4'-kinase_691183..691413_NEGATIVE 419 349 301 200 138 NC_002950:PG2064|5end_hypothetical_protein_2160550..2160780_POSITIVE 415 328 285 199 156 NC_002950:PG0349|5end_hydrolase,_haloacid_dehalogenase-like_family_384459..384689_POSITIVE 414 352 312 100 58 NC_002950:PG1999|5end_hypothetical_protein_2088821..2089051_NEGATIVE 414 673 632 63 22 NC_002950:PG1234|5end_hypothetical_protein_1310112..1310342_POSITIVE 413 348 301 174 120 NC_002950:PG1196|5end_hypothetical_protein_1275127..1275357_POSITIVE 410 339 292 81 17 NC_002950:PG2200|5end_TPR_domain_protein_2308807..2309037_NEGATIVE 405 349 302 195 128 NC_002950:PG2087|5end_hypothetical_protein_2186990..2187220_POSITIVE 400 349 307 192 138 NC_002950:PG0093|5end_HlyD_family_secretion_protein_109638..109868_NEGATIVE 399 359 311 189 134 NC_002950:PG1481|5end_conjugative_transposon_protein_TraG_1558447..1558677_NEGATIVE 398 350 301 71 18 NC_002950:PG0217|5end_hypothetical_protein_252490..252720_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 849 110 61 79 31 NC_002950:PG0197|3end_hypothetical_protein_235941..236091_NEGATIVE 837 650 602 49 1 NC_002950:PG2117|3end_30S_ribosomal_protein_S16_2225235..2225385_NEGATIVE 650 665 622 41 2 NC_002950:PG1950|3end_hypothetical_protein_2040840..2040990_POSITIVE 443 669 623 69 22 NC_002950:PG0186|3end_lipoprotein_RagB_222997..223147_POSITIVE 432 349 301 113 58 NC_002950:PG1972|3end_hemagglutinin_protein_HagB_2061203..2061353_POSITIVE 432 350 301 84 26 NC_002950:PG0378|3end_elongation_factor_Ts_408808..408958_POSITIVE 429 675 637 37 1 NC_002950:PG1715|3end_hypothetical_protein_1803393..1803543_NEGATIVE 421 359 311 98 37 NC_002950:PG0672|3end_iron_compound_ABC_transporter,_ATP-binding_protein_723840..723990_POSITIVE 420 350 303 98 50 NC_002950:PG0605|3end_hypothetical_protein_661165..661315_NEGATIVE 418 104 61 150 105 NC_002950:PG1251|3end_hypothetical_protein_1328212..1328362_POSITIVE 417 349 301 113 52 NC_002950:PG1975|3end_hemagglutinin_protein_HagC_2064350..2064500_POSITIVE 414 352 312 79 37 NC_002950:PG2000|3end_signal_peptidase-related_protein_2088842..2088992_NEGATIVE 407 663 624 52 13 NC_002950:PG2170|3end_sugar_transporter_2276685..2276835_NEGATIVE 406 350 301 151 92 NC_002950:PG0957|3end_riboflavin_biosynthesis_protein_RibF_1018131..1018281_POSITIVE 400 349 307 142 88 NC_002950:PG0094|3end_outer_membrane_efflux_protein,_putative_109688..109838_NEGATIVE 397 673 632 36 1 NC_002950:PG1676|3end_phosphoenolpyruvate_carboxykinase_1760489..1760639_NEGATIVE 397 349 301 117 66 NC_002950:PG1647|3end_cardiolipin_synthetase_1727774..1727924_POSITIVE 396 100 52 146 98 NC_002950:PG2220|3end_hypothetical_protein_2335368..2335518_POSITIVE 396 100 52 146 98 NC_002950:PG0499|3end_hypothetical_protein_539142..539292_POSITIVE 393 670 621 76 16 NC_002950:PG0618|3end_alkyl_hydroperoxide_reductase,_C_subunit_671018..671168_POSITIVE