Origin IGS: tcttcgtcctctattcttaatgtgagttcgatataaaggaatggcacaacacattggttattagtgtgttttattttccacacagtgtttttcaggcacttatattgctttcagatggctttttatctacatatgaagcccaatgacttagaagccgccccttcttcccgatcattatgcagccggagaatcacaaaagagtatgatttacagctactcgttatttttatggtatgttcgcttagatcgaactggcgttatatctcgtacccgaatggtttacacgccaaaatttttgcgcttgtggtcgctgaaaacatggcgtgaaaactttttgcttttggcgtgggaagtgaaaaaattacgcgccacaacgaaaaaattccggtgccacttttgggaaaaacacagaccgcaattttagcgttttgggttcgtgttttcgaatgagtgagttacgggtattgctccaaaggggtgatggcgaatcattgacacgacgtgtcgtgtccgtcccgtccgagcgtgtgat .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 atcacacgctcggacgggacggacacgacacgtcgtgtcaatgattcgccatcacccctttggagcaatacccgtaactcactcattcgaaaacacgaacccaaaacgctaaaattgcggtctgtgtttttcccaaaagtggcaccggaattttttcgttgtggcgcgtaattttttcacttcccacgccaaaagcaaaaagttttcacgccatgttttcagcgaccacaagcgcaaaaattttggcgtgtaaaccattcgggtacgagatataacgccagttcgatctaagcgaacataccataaaaataacgagtagctgtaaatcatactcttttgtgattctccggctgcataatgatcgggaagaaggggcggcttctaagtcattgggcttcatatgtagataaaaagccatctgaaagcaatataagtgcctgaaaaacactgtgtggaaaataaaacacactaataaccaatgtgttgtgccattcctttatatcgaactcacattaagaatagaggacgaaga Mask Tandem Repeat Region ================================================ tcttcgtcctctattcttaatgtgagttcgatataaaggaatggcacaacacattggttattagtgtgttttattttccacacagtgtttttcaggcacttatattgctttcagatggctttttatctacatatgaagcccaatgacttagaagccgccccttcttcccgatcattatgcagccggagaatcacaaaagagtatgatttacagctactcgttatttttatggtatgttcgcttagatcgaactggcgttatatctcgtacccgaatggtttacacgccaaaatttttgcgcttgtggtcgctgaaaacatggcgtgaaaactttttgcttttggcgtgggaagtgaaaaaattacgcgccacaacgaaaaaattccggtgccacttttgggaaaaacacagaccgcaattttagcgttttgggttcgtgttttcgaatgagtgagttacgggtattgctccaaaggggtgatggcgaatcattgacacgacgtgtcgtgtccgtcccgtccgagcgtgtgat Find is-nt database================================================ Query_seq: PG0030:PG0031|PG0030:PG0031:cytidine deaminase:hypothetical protein:-><-:36463..36994 532 tcttcgtcctctattcttaatgtgagttcgatataaaggaatggcacaacacattggttattagtgtgttttattttccacacagtgtttttcaggcacttatattgctttcagatggctttttatctacatatgaagcccaatgacttagaagccgccccttcttcccgatcattatgcagccggagaatcacaaaagagtatgatttacagctactcgttatttttatggtatgttcgcttagatcgaactggcgttatatctcgtacccgaatggtttacacgccaaaatttttgcgcttgtggtcgctgaaaacatggcgtgaaaactttttgcttttggcgtgggaagtgaaaaaattacgcgccacaacgaaaaaattccggtgccacttttgggaaaaacacagaccgcaattttagcgttttgggttcgtgttttcgaatgagtgagttacgggtattgctccaaaggggtgatggcgaatcattgacacgacgtgtcgtgtccgtcccgtccgagcgtgtgat Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PG0030:PG0031|PG0030:PG0031:cytidine deaminase:hypothetical protein:-><-:36463..36994 532 tcttcgtcctctattcttaatgtgagttcgatataaaggaatggcacaacacattggttattagtgtgttttattttccacacagtgtttttcaggcacttatattgctttcagatggctttttatctacatatgaagcccaatgacttagaagccgccccttcttcccgatcattatgcagccggagaatcacaaaagagtatgatttacagctactcgttatttttatggtatgttcgcttagatcgaactggcgttatatctcgtacccgaatggtttacacgccaaaatttttgcgcttgtggtcgctgaaaacatggcgtgaaaactttttgcttttggcgtgggaagtgaaaaaattacgcgccacaacgaaaaaattccggtgccacttttgggaaaaacacagaccgcaattttagcgttttgggttcgtgttttcgaatgagtgagttacgggtattgctccaaaggggtgatggcgaatcattgacacgacgtgtcgtgtccgtcccgtccgagcgtgtgat Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PG0030:PG0031|PG0030:PG0031:cytidine deaminase:hypothetical protein:-><-:36463..36994 532 tcttcgtcctctattcttaatgtgagttcgatataaaggaatggcacaacacattggttattagtgtgttttattttccacacagtgtttttcaggcacttatattgctttcagatggctttttatctacatatgaagcccaatgacttagaagccgccccttcttcccgatcattatgcagccggagaatcacaaaagagtatgatttacagctactcgttatttttatggtatgttcgcttagatcgaactggcgttatatctcgtacccgaatggtttacacgccaaaatttttgcgcttgtggtcgctgaaaacatggcgtgaaaactttttgcttttggcgtgggaagtgaaaaaattacgcgccacaacgaaaaaattccggtgccacttttgggaaaaacacagaccgcaattttagcgttttgggttcgtgttttcgaatgagtgagttacgggtattgctccaaaggggtgatggcgaatcattgacacgacgtgtcgtgtccgtcccgtccgagcgtgtgat Intra-Species Hit: Count: 0 Inter-species Hit: Count: 3 Min: 268 Max: 444 Len: 177 Subject: UniRef90_Q7MU89 Cluster: Hypothetical protein; n=1; Porphyromonas gingivalis|Rep: Hypothetical protein - Porphyromonas gingivalis (Bacteroides gingivalis) HSP 1 e-value: 9.0E-10 bit: 65.5 Len: 174 Query Start:268 Query End:441 Subject Strand: null Subject Start: 12 Subject End: 69 ........................................................................................................................................................................................................................................................................... N T N P K R * N C G L C F S Q K W H R N F F V V A R N F F T S H A K S K K F S R H V F S D H K R K N F G V * T I R V ........................................................................................... ........................................................................................................................................................................................................................................................................... N T N Q K S S D C G S C F L K K W R E I F F V L A C K F F N C R A K T K K F S R H V F V G N K C E N S G T Q T Y R I ........................................................................................... Subject: UniRef90_Q7MUH1 Cluster: Hypothetical protein; n=1; Porphyromonas gingivalis|Rep: Hypothetical protein - Porphyromonas gingivalis (Bacteroides gingivalis) HSP 1 e-value: 7.0E-7 bit: 55.8 Len: 168 Query Start:277 Query End:444 Subject Strand: null Subject Start: 8 Subject End: 63 .................................................................................................................................................................................................................................................................................... G L H A K I F A L V V A E N M A * K L F A F G V G S E K I T R H N E K I P V P L L G K T Q T A I L A F W V R V F ........................................................................................ .................................................................................................................................................................................................................................................................................... G L G S K I F P F A T P Q N A V R K L F Y F G V G S K K F S R H N E K I L A P L F Q G I R A T I G A F P V R V F ........................................................................................ Subject: UniRef90_Q7MTB1 Cluster: Hypothetical protein; n=1; Porphyromonas gingivalis|Rep: Hypothetical protein - Porphyromonas gingivalis (Bacteroides gingivalis) HSP 1 e-value: 4.0E-6 bit: 53.1 Len: 129 Query Start:314 Query End:442 Subject Strand: null Subject Start: 4 Subject End: 46 ......................................................................................................................................................................................................................................................................................................................... K T W R E N F L L L A W E V K K L R A T T K K F R C H F W E K H R P Q F * R F G F V F .......................................................................................... ......................................................................................................................................................................................................................................................................................................................... K T W R E N F F V L V R E V K N L R A T A K K I S R H F F R K Y E P Q P G V F W F V F .......................................................................................... tcttcgtcctctattcttaatgtgagttcgatataaaggaatggcacaacacattggttattagtgtgttttattttccacacagtgtttttcaggcacttatattgctttcagatggctttttatctacatatgaagcccaatgacttagaagccgccccttcttcccgatcattatgcagccggagaatcacaaaagagtatgatttacagctactcgttatttttatggtatgttcgcttagatcgaactggcgttatatctcgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaatgagtgagttacgggtattgctccaaaggggtgatggcgaatcattgacacgacgtgtcgtgtccgtcccgtccgagcgtgtgat Predict ORF larger than 30AA ================================================ Protein_Len: 37 Strand: + Start: 33 End: 143 ................................ M K E W H N T L V I S V F Y F P H S V F Q A L I L L S D G F L S T Y E A Q ..................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 64 End: 324 ............................................................... M C F I F H T V F F R H L Y C F Q M A F Y L H M K P N D L E A A P S S R S L C S R R I T K E Y D L Q L L V I F M V C S L ................................................................................................................................................................................................................ Protein_Len: 60 Strand: + Start: 203 End: 421 .......................................................................................................................................................................................................... M I Y S Y S L F L W Y V R L D R T G V I S R T R M V Y T P K F L R L W S L K T W R E N F L L L A W E V K K L R A T T K K ............................................................................................................... Protein_Len: 34 Strand: + Start: 346 End: 447 ......................................................................................................................................................................................................................................................................................................................................................... M G S E K I T R H N E K I P V P L L G K T Q T A I L A F W V R V F E ..................................................................................... Protein_Len: 34 Strand: + Start: 429 End: 530 ............................................................................................................................................................................................................................................................................................................................................................................................................................................ M G S C F R M S E L R V L L Q R G D G E S L T R R V V S V P S E R V .. Protein_Len: 56 Strand: - Start: 365 End: 532 ............................................................................................................................................................................................................................................................................................................................................................................ A G C R F F E P A V K P F F V S R L K L T K P E H K R I L S N R T N S W L P S P S D N V R R T T D T G D S R T M Protein_Len: 43 Strand: - Start: 283 End: 411 .......................................................................................................................................................................................................................................................................................... V G F N K R K H D S F V H R S F K K S K A H S T F F N R A V V F F N R H W K Q S F C M ......................................................................................................................... Protein_Len: 53 Strand: - Start: 261 End: 419 .................................................................................................................................................................................................................................................................... I E Y G F P K C A L I K A S T T A S F M A H F S K A K P T P L S F I V R W L S F I G T G S K P F V C V A M ................................................................................................................. Protein_Len: 35 Strand: - Start: 126 End: 230 ............................................................................................................................. R C I F G L S K S A A G E E R D N H L R L I V F S Y S K C S S T I K M .............................................................................................................................................................................................................................................................................................................. Protein_Len: 31 Strand: - Start: 3 End: 95 .. E D E I R L T L E I Y L F P V V C Q N N T H K I K W V T N K M ..................................................................................................................................................................................................................................................................................................................................................................................................................................................... tcttcgtcctctattcttaatgtgagttcgatataaaggaatggcacaacacattggttattagtgtgttttattttccacacagtgtttttcaggcacttatattgctttcagatggctttttatctacatatgaagcccaatgacttagaagccgccccttcttcccgatcattatgcagccggagaatcacaaaagagtatgatttacagctactcgttatttttatggtatgttcgcttagatcgaactggcgttatatctcgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaatgagtgagttacgggtattgctccaaaggggtgatggcgaatcattgacacgacgtgtcgtgtccgtcccgtccgagcgtgtgat Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ PromScan Matrix: RpoN Strand: + Score: 83 Start: 93 End: 109 ............................................................................................CAGGCACTTATATTGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................... tcttcgtcctctattcttaatgtgagttcgatataaaggaatggcacaacacattggttattagtgtgttttattttccacacagtgtttttcaggcacttatattgctttcagatggctttttatctacatatgaagcccaatgacttagaagccgccccttcttcccgatcattatgcagccggagaatcacaaaagagtatgatttacagctactcgttatttttatggtatgttcgcttagatcgaactggcgttatatctcgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaatgagtgagttacgggtattgctccaaaggggtgatggcgaatcattgacacgacgtgtcgtgtccgtcccgtccgagcgtgtgat Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 75 HP_score: -3.1 Tail_Score: -5.0925 Start: 278 End: 331 Full_Region: TCTCGTACCCGAATG GTTTACACGCCAAAATTTTTGCGCT TGT GGTCGCTGAAAACATGGCGTGAAAAC TTTTTGCTTTTGGCG .....................................................................................................................................................................................................................................................................................GTTTACACGCCAAAATTTTTGCGCTTGTGGTCGCTGAAAACATGGCGTGAAAAC......................................................................................................................................................................................................... Find igs database================================================ Query_seq: PG0030:PG0031|PG0030:PG0031:cytidine deaminase:hypothetical protein:-><-:36463..36994 532 tcttcgtcctctattcttaatgtgagttcgatataaaggaatggcacaacacattggttattagtgtgttttattttccacacagtgtttttcaggcacttatattgctttcagatggctttttatctacatatgaagcccaatgacttagaagccgccccttcttcccgatcattatgcagccggagaatcacaaaagagtatgatttacagctactcgttatttttatggtatgttcgcttagatcgaactggcgttatatctcgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaatgagtgagttacgggtattgctccaaaggggtgatggcgaatcattgacacgacgtgtcgtgtccgtcccgtccgagcgtgtgat Intra-Species Hit: Count: 4 Min: 1 Max: 532 Len: 532 Subject: NC_002950_PG0030_PG0031|cytidine deaminase:hypothetical protein|POSITIVE:NEGATIVE|[36463,36994]|532 HSP 1 e-value: 1.0E-148 bit: 527.0 Len: 266 Query Start:1 Query End:266 Subject Strand: POSITIVE Subject Start: 1 Subject End: 266 tcttcgtcctctattcttaatgtgagttcgatataaaggaatggcacaacacattggttattagtgtgttttattttccacacagtgtttttcaggcacttatattgctttcagatggctttttatctacatatgaagcccaatgacttagaagccgccccttcttcccgatcattatgcagccggagaatcacaaaagagtatgatttacagctactcgttatttttatggtatgttcgcttagatcgaactggcgttatatctc.......................................................................................................................................................................................................................................................................... tcttcgtcctctattcttaatgtgagttcgatataaaggaatggcacaacacattggttattagtgtgttttattttccacacagtgtttttcaggcacttatattgctttcagatggctttttatctacatatgaagcccaatgacttagaagccgccccttcttcccgatcattatgcagccggagaatcacaaaagagtatgatttacagctactcgttatttttatggtatgttcgcttagatcgaactggcgttatatctc.......................................................................................................................................................................................................................................................................... HSP 2 e-value: 8.0E-42 bit: 172.0 Len: 87 Query Start:446 Query End:532 Subject Strand: POSITIVE Subject Start: 446 Subject End: 532 .............................................................................................................................................................................................................................................................................................................................................................................................................................................................aatgagtgagttacgggtattgctccaaaggggtgatggcgaatcattgacacgacgtgtcgtgtccgtcccgtccgagcgtgtgat .............................................................................................................................................................................................................................................................................................................................................................................................................................................................aatgagtgagttacgggtattgctccaaaggggtgatggcgaatcattgacacgacgtgtcgtgtccgtcccgtccgagcgtgtgat Subject: NC_002950_PG1398_PG1401|hypothetical protein:beta-eliminating lyase|POSITIVE:NEGATIVE|[1481008,1483488]|2481 HSP 1 e-value: 1.0E-127 bit: 456.0 Len: 246 Query Start:14 Query End:259 Subject Strand: NEGATIVE Subject Start: 15 Subject End: 260 .............ttcttaatgtgagttcgatataaaggaatggcacaacacattggttattagtgtgttttattttccacacagtgtttttcaggcacttatattgctttcagatggctttttatctacatatgaagcccaatgacttagaagccgccccttcttcccgatcattatgcagccggagaatcacaaaagagtatgatttacagctactcgttatttttatggtatgttcgcttagatcgaactggcgtt................................................................................................................................................................................................................................................................................. .............ttcttaacgtgagctcgatataaaggaatggcacaacacattggttattagtgtgttttattttccacacagtgtttttcaggcacttatattgctttcagatggctttttatctacatctgaagcccaatgacttagaagccgccccttcttcccgatcattatgcagccggagaatcacaaaagagtatgatttacagctacttgttatttttatggtatgttcgcttagatcgaactggcgtt................................................................................................................................................................................................................................................................................. Subject: NC_002950_PG2116_PG2117|hypothetical protein:30S ribosomal protein S16|POSITIVE:NEGATIVE|[2224928,2225324]|397 HSP 1 e-value: 1.0E-125 bit: 450.0 Len: 239 Query Start:22 Query End:260 Subject Strand: NEGATIVE Subject Start: 37 Subject End: 275 .....................gtgagttcgatataaaggaatggcacaacacattggttattagtgtgttttattttccacacagtgtttttcaggcacttatattgctttcagatggctttttatctacatatgaagcccaatgacttagaagccgccccttcttcccgatcattatgcagccggagaatcacaaaagagtatgatttacagctactcgttatttttatggtatgttcgcttagatcgaactggcgtta................................................................................................................................................................................................................................................................................ .....................gtgagctcgatataaaggaatggcacaacacattggttattagtgtgttttattttccacacagtgtttttcaggcacttatattgctttcagatggctttttatctacatctgaagcccaatgacttagaagccgccccttcttcccgatcattatgcagccggagaatcacaaaagagtatgatttacagctacttgttatttttatggtatgttcgcttagatcgaactggcgtta................................................................................................................................................................................................................................................................................ Subject: NC_002950_PG2168_PG2170|hypothetical protein:sugar transporter|NEGATIVE:NEGATIVE|[2274248,2276774]|2527 HSP 1 e-value: 1.0E-122 bit: 440.0 Len: 238 Query Start:22 Query End:259 Subject Strand: NEGATIVE Subject Start: 622 Subject End: 859 .....................gtgagttcgatataaaggaatggcacaacacattggttattagtgtgttttattttccacacagtgtttttcaggcacttatattgctttcagatggctttttatctacatatgaagcccaatgacttagaagccgccccttcttcccgatcattatgcagccggagaatcacaaaagagtatgatttacagctactcgttatttttatggtatgttcgcttagatcgaactggcgtt................................................................................................................................................................................................................................................................................. .....................gtgagttcgatataaaggaatggcacaacacattggttattagtgtgttttattttccacacagtgtttttcagacacttatattgctttcagatggctttttatctacatctgaagcccaatgacttggaagccgccccttcttcccgatcattatgcagccggagaatcacaaaagagtatgatttacagctacttgttatttttatggtatgttcgcttagatcgaactggcgtt................................................................................................................................................................................................................................................................................. Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UCUUCGUCCUCUAUUCUUAAUGUGAGUUCGAUAUAAAGGAAUGGCACAACACAUUGGUUAUUAGUGUGUUUUAUUUUCCACACAGUGUUUUUCAGGCACUUAUAUUGCUUUCAGAUGGCUUUUUAUCUACAUAUGAAGCCCAAUGACUUAGAAGCCGCCCCUUCUUCCCGAUCAUUAUGCAGCCGGAGAAUCACAAAAGAGUAUGAUUUACAGCUACUCGUUAUUUUUAUGGUAUGUUCGCUUAGAUCGAACUGGCGUUAUAUCUCGUACCCGAAUGGUUUACACGCCAAAAUUUUUGCGCUUGUGGUCGCUGAAAACAUGGCGUGAAAACUUUUUGCUUUUGGCGUGGGAAGUGAAAAAAUUACGCGCCACAACGAAAAAAUUCCGGUGCCACUUUUGGGAAAAACACAGACCGCAAUUUUAGCGUUUUGGGUUCGUGUUUUCGAAUGAGUGAGUUACGGGUAUUGCUCCAAAGGGGUGAUGGCGAAUCAUUGACACGACGUGUCGUGUCCGUCCCGUCCGAGCGUGUGAU ..((((((.((((.((...((.((((..(((((((..((((......(((((((((.....))))))))).....))))....((((((.....)))))))))))))..)))).))((((((.(((....))).))))))....))..))))...((((((((.....(((((.....(((((((((((((.((....(((((.(........)))))))).)))))).)))).))).......)))))....((.((.((((((.(((((.((((.((((.(((((((...((((.((((.....).))).))))...))))))).)))).(((((.((.(((((((..(..(....)..)..))))))).)))))))..)))).)))))(((((....(((((.(((..(((.(((..........))))))..))))))))....)))))......)))))).)).)).))))))))..)))))).....(((((((....))))))).(((((((....))).).))) (-149.70) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AUCACACGCUCGGACGGGACGGACACGACACGUCGUGUCAAUGAUUCGCCAUCACCCCUUUGGAGCAAUACCCGUAACUCACUCAUUCGAAAACACGAACCCAAAACGCUAAAAUUGCGGUCUGUGUUUUUCCCAAAAGUGGCACCGGAAUUUUUUCGUUGUGGCGCGUAAUUUUUUCACUUCCCACGCCAAAAGCAAAAAGUUUUCACGCCAUGUUUUCAGCGACCACAAGCGCAAAAAUUUUGGCGUGUAAACCAUUCGGGUACGAGAUAUAACGCCAGUUCGAUCUAAGCGAACAUACCAUAAAAAUAACGAGUAGCUGUAAAUCAUACUCUUUUGUGAUUCUCCGGCUGCAUAAUGAUCGGGAAGAAGGGGCGGCUUCUAAGUCAUUGGGCUUCAUAUGUAGAUAAAAAGCCAUCUGAAAGCAAUAUAAGUGCCUGAAAAACACUGUGUGGAAAAUAAAACACACUAAUAACCAAUGUGUUGUGCCAUUCCUUUAUAUCGAACUCACAUUAAGAAUAGAGGACGAAGA .......((((.((.(((...(((((((....)))))))..((((.....)))).))).)).)))).....(((....(((((.....(((((((((.((((((..........))).))).)))))))))......)))))...)))....((((((..(((((((................((((((............((((.(((((((.(((((..(((........))).)))))..))))))).))))..(((((((((...((((..((((.(((((.......)))))...((.............(((((((..(((((((......)))))))...))))))).......((.....)).))))))((((.....(((...(((((..(((....)))..)))))...))))))).))))..))))))))).......)))))).......((((((...........)))))))))))))((((((((.((.............)))))))))))))))) (-149.92) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 519 409 365 126 82 NC_002950:PG1617|5end_hypothetical_protein_1697755..1697985_NEGATIVE 508 380 332 170 123 NC_002950:PG2063|5end_hypothetical_protein_2160596..2160826_NEGATIVE 434 351 311 163 123 NC_002950:PG0081|5end_hypothetical_protein_93805..94035_POSITIVE 413 525 492 173 129 NC_002950:PG1565|5end_3-deoxy-D-manno-octulosonic-acid_transferase,_putative_1645859..1646089_NEGATIVE 412 369 321 146 98 NC_002950:PG0132|5end_hypothetical_protein_152879..153109_POSITIVE 398 352 313 49 11 NC_002950:PG1799|5end_hypothetical_protein_1894499..1894729_POSITIVE 375 527 481 228 189 NC_002950:PG1779|5end_hypothetical_protein_1867924..1868154_POSITIVE 373 516 475 230 173 NC_002950:PG0159|5end_endopeptidase_PepO_183164..183394_NEGATIVE 372 517 475 152 109 NC_002950:PG0725|5end_hydrolase,_haloacid_dehalogenase-like_family_777260..777490_POSITIVE 372 530 481 85 40 NC_002950:PG0006|5end_MATE_efflux_family_protein_6332..6562_NEGATIVE 369 402 367 87 48 NC_002950:PG2064|5end_hypothetical_protein_2160550..2160780_POSITIVE 366 529 483 203 161 NC_002950:PG1760|5end_ABC_transporter,_ATP-binding_protein_1846507..1846737_POSITIVE 360 350 302 69 14 NC_002950:PG1980|5end_hypothetical_protein_2067930..2068160_NEGATIVE 357 440 391 57 8 NC_002950:PG1655|5end_hypothetical_protein_1737095..1737325_POSITIVE 354 409 365 91 50 NC_002950:PG0313|5end_hypothetical_protein_347366..347596_POSITIVE 352 510 462 187 125 NC_002950:PG2134|5end_lipoprotein,_putative_2239927..2240157_POSITIVE 350 530 481 208 136 NC_002950:PG0310|5end_nitroreductase_family_protein_345559..345789_NEGATIVE 347 524 481 216 162 NC_002950:PG0794|5end_penicillin-binding_protein_1A,_putative_846411..846641_POSITIVE 345 519 474 200 153 NC_002950:PG2027|5end_hypothetical_protein_2125494..2125724_POSITIVE 345 186 141 156 122 NC_002950:PG1966|5end_hypothetical_protein_2056924..2057154_NEGATIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 803 260 211 54 5 NC_002950:PG2116|3end_hypothetical_protein_2224867..2225017_POSITIVE 803 260 211 61 12 NC_002950:PG2057|3end_ISPg5,_transposase_Orf2_2155009..2155159_NEGATIVE 792 259 211 76 28 NC_002950:PG1398|3end_hypothetical_protein_1480947..1481097_POSITIVE 486 398 351 55 8 NC_002950:PG0542|3end_hypothetical_protein_595377..595527_NEGATIVE 413 525 492 148 104 NC_002950:PG1566|3end_glutamyl-tRNA_synthetase_1645884..1646034_NEGATIVE 413 450 404 72 22 NC_002950:PG1024|3end_hypothetical_protein_1086876..1087026_POSITIVE 381 310 262 56 1 NC_002950:PG0224|3end_hypothetical_protein_257614..257764_NEGATIVE 375 527 481 146 107 NC_002950:PG1778|3end_hypothetical_protein_1867922..1868072_POSITIVE 374 186 154 135 100 NC_002950:PG0520|3end_chaperonin_GroEL_563618..563768_NEGATIVE 372 517 475 67 24 NC_002950:PG0724|3end_prolyl_oligopeptidase_family_protein_777255..777405_POSITIVE 367 446 405 42 1 NC_002950:PG2227|3end_hypothetical_protein_2342744..2342894_POSITIVE 351 495 462 149 111 NC_002950:PG2133|3end_lipoprotein,_putative_2239993..2240143_POSITIVE 347 524 481 60 6 NC_002950:PG0793|3end_fructose-1,6-bisphosphatase_846335..846485_POSITIVE 346 370 321 62 15 NC_002950:PG0732|3end_hypothetical_protein_783018..783168_POSITIVE 344 487 443 140 91 NC_002950:PG0327|3end_hypothetical_protein_360907..361057_NEGATIVE 344 527 482 67 18 NC_002950:PG0151|3end_signal_recognition_particle-docking_protein_FtsY_173541..173691_NEGATIVE 343 187 154 103 73 NC_002950:PG1855|3end_carboxyl-terminal_protease_1953842..1953992_NEGATIVE 343 470 424 148 101 NC_002950:PG1121|3end_asparaginyl-tRNA_synthetase_1196146..1196296_NEGATIVE 342 530 481 137 81 NC_002950:PG2150|3end_LysM_domain_protein_2257667..2257817_NEGATIVE 341 49 1 146 94 NC_002950:PG0843|3end_hypothetical_protein_904871..905021_NEGATIVE