Origin IGS: gagaaaaaacgagattatccgtgcagcaaaagccttgcacgccacaaaggtagggatttactcactgagacaaagctttttacccgattcagagcggaatgcctacagtctgatcttcgacatttgcagtctgttagctatatgtagtccggaagcagtacttcgtttttttgattcgataatgccggatacaatcaccatcccatctgaaaatatttcacgaaaatacagaccagaaaagttttcaacaacgaagaagagtttggaatcattctaaataagcgattgaaaggaagaggttttcaaggtaaaaatgttcatgaatcggacttttgggagttgaggtctgctttgaaagagtttcgatggcgatgtatatattaatcagtttcaatttatatacagatcgttttcgatttatatataaatcattttccatttgtatatagatcgtattcgatttgtatataaatagtagaacagaaaaggctgtttggagagctgatataaaagagacacccgctcgattcgtggccgaaccgagcgggtgccttatagatttgcaggagtggagaggaatgattagtccctattccttgtgcaatgtttgtctgttttcaaatgcgatgatgccatataaataaatggatgggatgggtgagagtagattgtgaagtaggagagtatatttcatgcgttcggatcgttaggaaagttggttgataggatgtaatagtttaatatatagttgcttattgctcgtttagaatctttgtttgccggcaaatgtagcaaaaaagtacgatgcgaatgaatcgaaaatttgctttccgtcaagcctcttttctcactatgcaggtgagtccgaaaaaacagttcctaaacctctttccgagcaatcatctgaggggtaaatatgacagagacataaggtattacggtgtgattacatatatttgtacttaaataatccactacaaaacgg .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 ccgttttgtagtggattatttaagtacaaatatatgtaatcacaccgtaataccttatgtctctgtcatatttacccctcagatgattgctcggaaagaggtttaggaactgttttttcggactcacctgcatagtgagaaaagaggcttgacggaaagcaaattttcgattcattcgcatcgtacttttttgctacatttgccggcaaacaaagattctaaacgagcaataagcaactatatattaaactattacatcctatcaaccaactttcctaacgatccgaacgcatgaaatatactctcctacttcacaatctactctcacccatcccatccatttatttatatggcatcatcgcatttgaaaacagacaaacattgcacaaggaatagggactaatcattcctctccactcctgcaaatctataaggcacccgctcggttcggccacgaatcgagcgggtgtctcttttatatcagctctccaaacagccttttctgttctactatttatatacaaatcgaatacgatctatatacaaatggaaaatgatttatatataaatcgaaaacgatctgtatataaattgaaactgattaatatatacatcgccatcgaaactctttcaaagcagacctcaactcccaaaagtccgattcatgaacatttttaccttgaaaacctcttcctttcaatcgcttatttagaatgattccaaactcttcttcgttgttgaaaacttttctggtctgtattttcgtgaaatattttcagatgggatggtgattgtatccggcattatcgaatcaaaaaaacgaagtactgcttccggactacatatagctaacagactgcaaatgtcgaagatcagactgtaggcattccgctctgaatcgggtaaaaagctttgtctcagtgagtaaatccctacctttgtggcgtgcaaggcttttgctgcacggataatctcgttttttctc Mask Tandem Repeat Region ================================================ gagaaaaaacgagattatccgtgcagcaaaagccttgcacgccacaaaggtagggatttactcactgagacaaagctttttacccgattcagagcggaatgcctacagtctgatcttcgacatttgcagtctgttagctatatgtagtccggaagcagtacttcgtttttttgattcgataatgccggatacaatcaccatcccatctgaaaatatttcacgaaaatacagaccagaaaagttttcaacaacgaagaagagtttggaatcattctaaataagcgattgaaaggaagaggttttcaaggtaaaaatgttcatgaatcggacttttgggagttgaggtctgctttgaaagagtttcgatggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagtagaacagaaaaggctgtttggagagctgatataaaagagacacccgctcgattcgtggccgaaccgagcgggtgccttatagatttgcaggagtggagaggaatgattagtccctattccttgtgcaatgtttgtctgttttcaaatgcgatgatgccatataaataaatggatgggatgggtgagagtagattgtgaagtaggagagtatatttcatgcgttcggatcgttaggaaagttggttgataggatgtaatagtttaatatatagttgcttattgctcgtttagaatctttgtttgccggcaaatgtagcaaaaaagtacgatgcgaatgaatcgaaaatttgctttccgtcaagcctcttttctcactatgcaggtgagtccgaaaaaacagttcctaaacctctttccgagcaatcatctgaggggtaaatatgacagagacataaggtattacggtgtgattacatatatttgtacttaaataatccactacaaaacgg Find is-nt database================================================ Query_seq: PG0022:PG0024|PG0022:PG0024:sulfate permease family protein:redox-sensing transcriptional repressor Rex:<-->:26887..27871 985 gagaaaaaacgagattatccgtgcagcaaaagccttgcacgccacaaaggtagggatttactcactgagacaaagctttttacccgattcagagcggaatgcctacagtctgatcttcgacatttgcagtctgttagctatatgtagtccggaagcagtacttcgtttttttgattcgataatgccggatacaatcaccatcccatctgaaaatatttcacgaaaatacagaccagaaaagttttcaacaacgaagaagagtttggaatcattctaaataagcgattgaaaggaagaggttttcaaggtaaaaatgttcatgaatcggacttttgggagttgaggtctgctttgaaagagtttcgatggcgatgtatatattaatcagtttcaatttatatacagatcgttttcgatttatatataaatcattttccatttgtatatagatcgtattcgatttgtatataaatagtagaacagaaaaggctgtttggagagctgatataaaagagacacccgctcgattcgtggccgaaccgagcgggtgccttatagatttgcaggagtggagaggaatgattagtccctattccttgtgcaatgtttgtctgttttcaaatgcgatgatgccatataaataaatggatgggatgggtgagagtagattgtgaagtaggagagtatatttcatgcgttcggatcgttaggaaagttggttgataggatgtaatagtttaatatatagttgcttattgctcgtttagaatctttgtttgccggcaaatgtagcaaaaaagtacgatgcgaatgaatcgaaaatttgctttccgtcaagcctcttttctcactatgcaggtgagtccgaaaaaacagttcctaaacctctttccgagcaatcatctgaggggtaaatatgacagagacataaggtattacggtgtgattacatatatttgtacttaaataatccactacaaaacgg Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PG0022:PG0024|PG0022:PG0024:sulfate permease family protein:redox-sensing transcriptional repressor Rex:<-->:26887..27871 985 gagaaaaaacgagattatccgtgcagcaaaagccttgcacgccacaaaggtagggatttactcactgagacaaagctttttacccgattcagagcggaatgcctacagtctgatcttcgacatttgcagtctgttagctatatgtagtccggaagcagtacttcgtttttttgattcgataatgccggatacaatcaccatcccatctgaaaatatttcacgaaaatacagaccagaaaagttttcaacaacgaagaagagtttggaatcattctaaataagcgattgaaaggaagaggttttcaaggtaaaaatgttcatgaatcggacttttgggagttgaggtctgctttgaaagagtttcgatggcgatgtatatattaatcagtttcaatttatatacagatcgttttcgatttatatataaatcattttccatttgtatatagatcgtattcgatttgtatataaatagtagaacagaaaaggctgtttggagagctgatataaaagagacacccgctcgattcgtggccgaaccgagcgggtgccttatagatttgcaggagtggagaggaatgattagtccctattccttgtgcaatgtttgtctgttttcaaatgcgatgatgccatataaataaatggatgggatgggtgagagtagattgtgaagtaggagagtatatttcatgcgttcggatcgttaggaaagttggttgataggatgtaatagtttaatatatagttgcttattgctcgtttagaatctttgtttgccggcaaatgtagcaaaaaagtacgatgcgaatgaatcgaaaatttgctttccgtcaagcctcttttctcactatgcaggtgagtccgaaaaaacagttcctaaacctctttccgagcaatcatctgaggggtaaatatgacagagacataaggtattacggtgtgattacatatatttgtacttaaataatccactacaaaacgg Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PG0022:PG0024|PG0022:PG0024:sulfate permease family protein:redox-sensing transcriptional repressor Rex:<-->:26887..27871 985 gagaaaaaacgagattatccgtgcagcaaaagccttgcacgccacaaaggtagggatttactcactgagacaaagctttttacccgattcagagcggaatgcctacagtctgatcttcgacatttgcagtctgttagctatatgtagtccggaagcagtacttcgtttttttgattcgataatgccggatacaatcaccatcccatctgaaaatatttcacgaaaatacagaccagaaaagttttcaacaacgaagaagagtttggaatcattctaaataagcgattgaaaggaagaggttttcaaggtaaaaatgttcatgaatcggacttttgggagttgaggtctgctttgaaagagtttcgatggcgatgtatatattaatcagtttcaatttatatacagatcgttttcgatttatatataaatcattttccatttgtatatagatcgtattcgatttgtatataaatagtagaacagaaaaggctgtttggagagctgatataaaagagacacccgctcgattcgtggccgaaccgagcgggtgccttatagatttgcaggagtggagaggaatgattagtccctattccttgtgcaatgtttgtctgttttcaaatgcgatgatgccatataaataaatggatgggatgggtgagagtagattgtgaagtaggagagtatatttcatgcgttcggatcgttaggaaagttggttgataggatgtaatagtttaatatatagttgcttattgctcgtttagaatctttgtttgccggcaaatgtagcaaaaaagtacgatgcgaatgaatcgaaaatttgctttccgtcaagcctcttttctcactatgcaggtgagtccgaaaaaacagttcctaaacctctttccgagcaatcatctgaggggtaaatatgacagagacataaggtattacggtgtgattacatatatttgtacttaaataatccactacaaaacgg Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 gagaaaaaacgagattatccgtgcagcaaaagccttgcacgccacaaaggtagggatttactcactgagacaaagctttttacccgattcagagcggaatgcctacagtctgatcttcgacatttgcagtctgttagctatatgtagtccggaagcagtacttcgtttttttgattcgataatgccggatacaatcaccatcccatctgaaaatatttcacgaaaatacagaccagaaaagttttcaacaacgaagaagagtttggaatcattctaaataagcgattgaaaggaagaggttttcaaggtaaaaatgttcatgaatcggacttttgggagttgaggtctgctttgaaagagtttcgatggcgatgtatatattaatcagtttcaatttatatacagatcgttttcgatttatatataaatcattttccatttgtatatagatcgtattcgatttgtatataaatagtagaacagaaaaggctgtttggagagctgatataaaagagacacccgctcgattcgtggccgaaccgagcgggtgccttatagatttgcaggagtggagaggaatgattagtccctattccttgtgcaatgtttgtctgttttcaaatgcgatgatgccatataaataaatggatgggatgggtgagagtagattgtgaagtaggagagtatatttcatgcgttcggatcgttaggaaagttggttgataggatgtaatagtttaatatatagttgcttattgctcgtttagaatctttgtttgccggcaaatgtagcaaaaaagtacgatgcgaatgaatcgaaaatttgctttccgtcaagcctcttttctcactatgcaggtgagtccgaaaaaacagttcctaaacctctttccgagcaatcatctgaggggtaaatatgacagagacataaggtattacggtgtgattacatatatttgtacttaaataatccactacaaaacgg Predict ORF larger than 30AA ================================================ Protein_Len: 60 Strand: + Start: 14 End: 274 ............. M I R A A K A L H A T K V G I Y S L R Q S F L P D S E R N A Y S L I F D I C S L L A I C S P E A V L R F F D S I M P D T ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 30 Strand: + Start: 189 End: 278 ............................................................................................................................................................................................ M Q S P S H L K I F H E N T D Q K S F Q Q R R R V W N H S K ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 52 Strand: + Start: 226 End: 381 ................................................................................................................................................................................................................................. M Q T R K V F N N E E E F G I I L N K R L K G R G F Q G K N V H E S D F W E L R S A L K E F R W R C I Y ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 41 Strand: + Start: 324 End: 446 ................................................................................................................................................................................................................................................................................................................................... M G L L G V E V C F E R V S M A M Y I L I S F N L Y T D R F R F I Y K S F S I C I ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 450 End: 641 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M V F D L Y I N S R T E K A V W R A D I K E T P A R F V A E P S G C L I D L Q E W R G M I S P Y S L C N V C L F S N A M ........................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 45 Strand: + Start: 777 End: 911 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ M P A N V A K K Y D A N E S K I C F P S S L F S H Y A G E S E K T V P K P L S E Q S S E G .......................................................................... Protein_Len: 53 Strand: + Start: 805 End: 963 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M R M N R K F A F R Q A S F L T M Q V S P K K Q F L N L F P S N H L R G K Y D R D I R Y Y G V I T Y I C T ...................... Protein_Len: 31 Strand: - Start: 883 End: 975 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. V E K R A I M Q P T F I V S V Y P I V T H N C I N T S L Y D M .......... Protein_Len: 60 Strand: - Start: 694 End: 876 ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... N P D N P F N T S L I Y Y N L I Y N S I A R K S D K N A P L H L L F T R H S H I S F K S E T L G R K E S H L H T R F F M ............................................................................................................. Protein_Len: 38 Strand: - Start: 621 End: 734 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ I R H H W I F L H I P H T L T S Q S T P S Y I E H T R I T L F T P Q Y S T M ........................................................................................................................................................................................................................................................... Protein_Len: 34 Strand: - Start: 593 End: 694 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ E K H L T Q R N E F A I I G Y L Y I S P I P S L L N H L L L T Y K M ................................................................................................................................................................................................................................................................................................... Protein_Len: 34 Strand: - Start: 586 End: 687 ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... D R N R T C H K D T K L H S S A M Y I F P H S P H S Y I T F Y S L M .......................................................................................................................................................................................................................................................................................................... Protein_Len: 58 Strand: - Start: 432 End: 605 ............................................................................................................................................................................................................................................................................................................................................................................................................................................... K G N T Y L D Y E I Q I Y I T S C F L S N P S S I Y F L C G S S E H G F R A P A K Y I Q L L P S S H N T G I G Q A M ............................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 36 Strand: - Start: 421 End: 528 .................................................................................................................................................................................................................................................................................................................................................................................................................................... I Y I M K W K Y I S R I R N T Y L Y Y F L F P Q K S L Q Y L L S V R E M ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 35 Strand: - Start: 277 End: 381 .................................................................................................................................................................................................................................................................................... I L S Q F S S T K L T F I N M F R V K P L Q P R S Q F L K S P S T Y M ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 60 Strand: - Start: 272 End: 583 ............................................................................................................................................................................................................................................................................... S R K R N I Y L D N E M Q I Y I T N S K Y I F L L V S F A T Q L A S I F S V G A R N T A S G L P H R I S K C S H L P I M .................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 42 Strand: - Start: 106 End: 231 ......................................................................................................... L R I K S M Q L R N A I H L G S A T S R K K S E I I G S V I V M G D S F I E R F Y M .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. gagaaaaaacgagattatccgtgcagcaaaagccttgcacgccacaaaggtagggatttactcactgagacaaagctttttacccgattcagagcggaatgcctacagtctgatcttcgacatttgcagtctgttagctatatgtagtccggaagcagtacttcgtttttttgattcgataatgccggatacaatcaccatcccatctgaaaatatttcacgaaaatacagaccagaaaagttttcaacaacgaagaagagtttggaatcattctaaataagcgattgaaaggaagaggttttcaaggtaaaaatgttcatgaatcggacttttgggagttgaggtctgctttgaaagagtttcgatggcgatgtatatattaatcagtttcaatttatatacagatcgttttcgatttatatataaatcattttccatttgtatatagatcgtattcgatttgtatataaatagtagaacagaaaaggctgtttggagagctgatataaaagagacacccgctcgattcgtggccgaaccgagcgggtgccttatagatttgcaggagtggagaggaatgattagtccctattccttgtgcaatgtttgtctgttttcaaatgcgatgatgccatataaataaatggatgggatgggtgagagtagattgtgaagtaggagagtatatttcatgcgttcggatcgttaggaaagttggttgataggatgtaatagtttaatatatagttgcttattgctcgtttagaatctttgtttgccggcaaatgtagcaaaaaagtacgatgcgaatgaatcgaaaatttgctttccgtcaagcctcttttctcactatgcaggtgagtccgaaaaaacagttcctaaacctctttccgagcaatcatctgaggggtaaatatgacagagacataaggtattacggtgtgattacatatatttgtacttaaataatccactacaaaacgg Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ gagaaaaaacgagattatccgtgcagcaaaagccttgcacgccacaaaggtagggatttactcactgagacaaagctttttacccgattcagagcggaatgcctacagtctgatcttcgacatttgcagtctgttagctatatgtagtccggaagcagtacttcgtttttttgattcgataatgccggatacaatcaccatcccatctgaaaatatttcacgaaaatacagaccagaaaagttttcaacaacgaagaagagtttggaatcattctaaataagcgattgaaaggaagaggttttcaaggtaaaaatgttcatgaatcggacttttgggagttgaggtctgctttgaaagagtttcgatggcgatgtatatattaatcagtttcaatttatatacagatcgttttcgatttatatataaatcattttccatttgtatatagatcgtattcgatttgtatataaatagtagaacagaaaaggctgtttggagagctgatataaaagagacacccgctcgattcgtggccgaaccgagcgggtgccttatagatttgcaggagtggagaggaatgattagtccctattccttgtgcaatgtttgtctgttttcaaatgcgatgatgccatataaataaatggatgggatgggtgagagtagattgtgaagtaggagagtatatttcatgcgttcggatcgttaggaaagttggttgataggatgtaatagtttaatatatagttgcttattgctcgtttagaatctttgtttgccggcaaatgtagcaaaaaagtacgatgcgaatgaatcgaaaatttgctttccgtcaagcctcttttctcactatgcaggtgagtccgaaaaaacagttcctaaacctctttccgagcaatcatctgaggggtaaatatgacagagacataaggtattacggtgtgattacatatatttgtacttaaataatccactacaaaacgg Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 55 HP_score: -3.4 Tail_Score: -3.96777 Start: 152 End: 164 Full_Region: GCTATATGTAGTCCG GAAG CAGTA CTTC GTTTTTTTGATTCGA .......................................................................................................................................................GAAGCAGTACTTC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 55 HP_score: -2.7 Tail_Score: -4.1399 Start: 407 End: 460 Full_Region: CAATTTATATACAGA TCGTTTTCGATTTATATATAAAT CATTTTCC ATTTGTATATAGATCGTATTCGA TTTGTATATAAATAG ......................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTTTCGATTTATATATAAATCATTTTCCATTTGTATATAGATCGTATTCGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. TransTerm Strand: + Conf: 52 HP_score: -4.2 Tail_Score: -3.36766 Start: 412 End: 455 Full_Region: TATATACAGATCGTT TTCGATTTATATATAAAT CATTTTCC ATTTGTATATAGATCGTA TTCGATTTGTATATA ...........................................................................................................................................................................................................................................................................................................................................................................................................................TTCGATTTATATATAAATCATTTTCCATTTGTATATAGATCGTA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. TransTerm Strand: + Conf: 61 HP_score: -6.8 Tail_Score: -3.24118 Start: 414 End: 453 Full_Region: TATACAGATCGTTTT CGATTTATATATAAAT CATTTTCC ATTTGTATATAGATCG TATTCGATTTGTATA .............................................................................................................................................................................................................................................................................................................................................................................................................................CGATTTATATATAAATCATTTTCCATTTGTATATAGATCG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 83 HP_score: -11.2 Tail_Score: -3.54424 Start: 506 End: 559 Full_Region: TGTTTGGAGAGCTGA TATAAAAGAGACACCCGCTCGATTCG TGGC CGAACCGAGCGGGTGCCTTATAGA TTTGCAGGAGTGGAG .........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAAAAGAGACACCCGCTCGATTCGTGGCCGAACCGAGCGGGTGCCTTATAGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 100 HP_score: -21.7 Tail_Score: -4.54449 Start: 513 End: 554 Full_Region: ctcctgcaaatctat aaggcacccgctcggttcg gcca cgaatcgagcgggtgtctc ttttatatcagctct ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................aaggcacccgctcggttcggccacgaatcgagcgggtgtctc............................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 100 HP_score: -19.9 Tail_Score: -3.47349 Start: 515 End: 552 Full_Region: AGCTGATATAAAAGA GACACCCGCTCGATTCG TGGC CGAACCGAGCGGGTGCC TTATAGATTTGCAGG ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACACCCGCTCGATTCGTGGCCGAACCGAGCGGGTGCC................................................................................................................................................................................................................................................................................................................................................................................................................................................. TransTerm Strand: - Conf: 100 HP_score: -24.3 Tail_Score: -3.88029 Start: 515 End: 552 Full_Region: cctgcaaatctataa ggcacccgctcggttcg gcca cgaatcgagcgggtgtc tcttttatatcagct ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ggcacccgctcggttcggccacgaatcgagcgggtgtc................................................................................................................................................................................................................................................................................................................................................................................................................................................. TransTerm Strand: - Conf: 41 HP_score: -3.0 Tail_Score: -2.61452 Start: 817 End: 833 Full_Region: agaaaagaggcttga cggaaa gcaaa ttttcg attcattcgcatcgt ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cggaaagcaaattttcg........................................................................................................................................................ Find igs database================================================ Query_seq: PG0022:PG0024|PG0022:PG0024:sulfate permease family protein:redox-sensing transcriptional repressor Rex:<-->:26887..27871 985 gagaaaaaacgagattatccgtgcagcaaaagccttgcacgccacaaaggtagggatttactcactgagacaaagctttttacccgattcagagcggaatgcctacagtctgatcttcgacatttgcagtctgttagctatatgtagtccggaagcagtacttcgtttttttgattcgataatgccggatacaatcaccatcccatctgaaaatatttcacgaaaatacagaccagaaaagttttcaacaacgaagaagagtttggaatcattctaaataagcgattgaaaggaagaggttttcaaggtaaaaatgttcatgaatcggacttttgggagttgaggtctgctttgaaagagtttcgatggcgatgtatatattaatcagtttcaatttatatacagatcgttttcgatttatatataaatcattttccatttgtatatagatcgtattcgatttgtatataaatagtagaacagaaaaggctgtttggagagctgatataaaagagacacccgctcgattcgtggccgaaccgagcgggtgccttatagatttgcaggagtggagaggaatgattagtccctattccttgtgcaatgtttgtctgttttcaaatgcgatgatgccatataaataaatggatgggatgggtgagagtagattgtgaagtaggagagtatatttcatgcgttcggatcgttaggaaagttggttgataggatgtaatagtttaatatatagttgcttattgctcgtttagaatctttgtttgccggcaaatgtagcaaaaaagtacgatgcgaatgaatcgaaaatttgctttccgtcaagcctcttttctcactatgcaggtgagtccgaaaaaacagttcctaaacctctttccgagcaatcatctgaggggtaaatatgacagagacataaggtattacggtgtgattacatatatttgtacttaaataatccactacaaaacgg Intra-Species Hit: Count: 18 Min: 1 Max: 985 Len: 985 Subject: NC_002950_PG0022_PG0024|sulfate permease family protein:redox-sensing transcriptional repressor Rex|NEGATIVE:POSITIVE|[26887,27871]|985 HSP 1 e-value: 0.0 bit: 1911.0 Len: 985 Query Start:1 Query End:985 Subject Strand: POSITIVE Subject Start: 1 Subject End: 985 gagaaaaaacgagattatccgtgcagcaaaagccttgcacgccacaaaggtagggatttactcactgagacaaagctttttacccgattcagagcggaatgcctacagtctgatcttcgacatttgcagtctgttagctatatgtagtccggaagcagtacttcgnnnnnnngattcgataatgccggatacaatcaccatcccatctgaaaatatttcacgaaaatacagaccagaaaagttttcaacaacgaagaagagtttggaatcattctaaataagcgattgaaaggaagaggttttcaaggtaaaaatgttcatgaatcggacttttgggagttgaggtctgctttgaaagagtttcgatggcgatgtatatattaatcagtttcaatttatatacagatcgttttcgatttatatataaatcattttccatttgtatatagatcgtattcgatttgtatataaatagtagaacagaaaaggctgtttggagagctgatataaaagagacacccgctcgattcgtggccgaaccgagcgggtgccttatagatttgcaggagtggagaggaatgattagtccctattccttgtgcaatgtttgtctgttttcaaatgcgatgatgccatataaataaatggatgggatgggtgagagtagattgtgaagtaggagagtatatttcatgcgttcggatcgttaggaaagttggttgataggatgtaatagtttaatatatagttgcttattgctcgtttagaatctttgtttgccggcaaatgtagcaaaaaagtacgatgcgaatgaatcgaaaatttgctttccgtcaagcctcttttctcactatgcaggtgagtccgaaaaaacagttcctaaacctctttccgagcaatcatctgaggggtaaatatgacagagacataaggtattacggtgtgattacatatatttgtacttaaataatccactacaaaacgg gagaaaaaacgagattatccgtgcagcaaaagccttgcacgccacaaaggtagggatttactcactgagacaaagctttttacccgattcagagcggaatgcctacagtctgatcttcgacatttgcagtctgttagctatatgtagtccggaagcagtacttcgtttttttgattcgataatgccggatacaatcaccatcccatctgaaaatatttcacgaaaatacagaccagaaaagttttcaacaacgaagaagagtttggaatcattctaaataagcgattgaaaggaagaggttttcaaggtaaaaatgttcatgaatcggacttttgggagttgaggtctgctttgaaagagtttcgatggcgatgtatatattaatcagtttcaatttatatacagatcgttttcgatttatatataaatcattttccatttgtatatagatcgtattcgatttgtatataaatagtagaacagaaaaggctgtttggagagctgatataaaagagacacccgctcgattcgtggccgaaccgagcgggtgccttatagatttgcaggagtggagaggaatgattagtccctattccttgtgcaatgtttgtctgttttcaaatgcgatgatgccatataaataaatggatgggatgggtgagagtagattgtgaagtaggagagtatatttcatgcgttcggatcgttaggaaagttggttgataggatgtaatagtttaatatatagttgcttattgctcgtttagaatctttgtttgccggcaaatgtagcaaaaaagtacgatgcgaatgaatcgaaaatttgctttccgtcaagcctcttttctcactatgcaggtgagtccgaaaaaacagttcctaaacctctttccgagcaatcatctgaggggtaaatatgacagagacataaggtattacggtgtgattacatatatttgtacttaaataatccactacaaaacgg Subject: NC_002950_PG1411_PG1414|potassium uptake protein TrkA, putative:hypothetical protein|NEGATIVE:POSITIVE|[1495257,1497148]|1892 HSP 1 e-value: 1.0E-29 bit: 133.0 Len: 159 Query Start:398 Query End:556 Subject Strand: POSITIVE Subject Start: 1246 Subject End: 1404 .............................................................................................................................................................................................................................................................................................................................................................................................................atatacagatcgttttcgatttatatataaatcattttccatttgtatatagatcgtattcgatttgtatataaatagtagaacagaaaaggctgtttggagagctgatataaaagagacacccgctcgattcgtggccgaaccgagcgggtgccttat............................................................................................................................................................................................................................................................................................................................................................................................................................................. .............................................................................................................................................................................................................................................................................................................................................................................................................atatatagatcgttttcgatttgtatataaatcattttcaatttatatatagatcgaaactcatttgtatataaatcgaagaccgaaaaaggccctttcggaagctgaaataaaagaggcacccgcacgattcgtggccgaaccgtgcgggtgccttat............................................................................................................................................................................................................................................................................................................................................................................................................................................. HSP 2 e-value: 2.0E-6 bit: 56.0 Len: 44 Query Start:240 Query End:283 Subject Strand: POSITIVE Subject Start: 1088 Subject End: 1131 ...............................................................................................................................................................................................................................................agttttcaacaacgaagaagagtttggaatcattctaaataagc.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ...............................................................................................................................................................................................................................................agttttcaacaacgaagcggaatttggaatgattctaaataagc.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Subject: NC_002950_PG1866_PG1868|hypothetical protein:hypothetical protein|POSITIVE:NEGATIVE|[1964797,1965187]|391 HSP 1 e-value: 7.0E-19 bit: 97.6 Len: 77 Query Start:394 Query End:470 Subject Strand: NEGATIVE Subject Start: 119 Subject End: 195 .........................................................................................................................................................................................................................................................................................................................................................................................................atttatatacagatcgttttcgatttatatataaatcattttccatttgtatatagatcgtattcgatttgtatata................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... .........................................................................................................................................................................................................................................................................................................................................................................................................atttatatacagatcgttttcgttttatatacaaatcgttttccatttgtatacagatcgtatctgatttatatata................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 4.0E-17 bit: 91.7 Len: 74 Query Start:223 Query End:296 Subject Strand: NEGATIVE Subject Start: 293 Subject End: 366 ..............................................................................................................................................................................................................................aaaatacagaccagaaaagttttcaacaacgaagaagagtttggaatcattctaaataagcgattgaaaggaag................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ..............................................................................................................................................................................................................................aaaatacagaccgaaaaagttttcaacaacgaagacgagtttggaatcattccaaataagcacctgaaaggaag................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Subject: NC_002950_PG1889_PG1890|hypothetical protein:lipoprotein, putative|POSITIVE:POSITIVE|[1987151,1987704]|554 HSP 1 e-value: 7.0E-16 bit: 87.7 Len: 84 Query Start:389 Query End:472 Subject Strand: NEGATIVE Subject Start: 135 Subject End: 218 ....................................................................................................................................................................................................................................................................................................................................................................................................tttcaatttatatacagatcgttttcgatttatatataaatcattttccatttgtatatagatcgtattcgatttgtatataaa................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ....................................................................................................................................................................................................................................................................................................................................................................................................tttcaatttatatatagatcgttttcaatttatatataaatcgttttcaataaatatatatatcgtaaacgatttgtatataaa................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. HSP 2 e-value: 4.0E-8 bit: 61.9 Len: 47 Query Start:237 Query End:283 Subject Strand: NEGATIVE Subject Start: 325 Subject End: 371 ............................................................................................................................................................................................................................................aaaagttttcaacaacgaagaagagtttggaatcattctaaataagc.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ............................................................................................................................................................................................................................................aaaagttttcaacaatgaagacgagcttagaatcattctaaataagc.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. HSP 3 e-value: 6.0E-7 bit: 58.0 Len: 53 Query Start:421 Query End:473 Subject Strand: NEGATIVE Subject Start: 178 Subject End: 230 ....................................................................................................................................................................................................................................................................................................................................................................................................................................tatataaatcattttccatttgtatatagatcgtattcgatttgtatataaat................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ ....................................................................................................................................................................................................................................................................................................................................................................................................................................tatataaaccattttcaatttatatatagatcgttttcaatttatatataaat................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Subject: NC_002950_PG1167_PG1169|hypothetical protein:hypothetical protein|POSITIVE:NEGATIVE|[1248705,1249172]|468 HSP 1 e-value: 4.0E-14 bit: 81.8 Len: 57 Query Start:397 Query End:453 Subject Strand: POSITIVE Subject Start: 91 Subject End: 147 ............................................................................................................................................................................................................................................................................................................................................................................................................tatatacagatcgttttcgatttatatataaatcattttccatttgtatatagatcg.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ............................................................................................................................................................................................................................................................................................................................................................................................................tatatatagatcgttttcgttttatatataaatcgttttccatttatatatagatcg.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 2.0E-6 bit: 56.0 Len: 48 Query Start:509 Query End:556 Subject Strand: POSITIVE Subject Start: 202 Subject End: 249 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................aaaagagacacccgctcgattcgtggccgaaccgagcgggtgccttat............................................................................................................................................................................................................................................................................................................................................................................................................................................. ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................aaaagaggcacccacacgattcgtggccgaaccatgcgggtgccttat............................................................................................................................................................................................................................................................................................................................................................................................................................................. Subject: NC_002950_PG0903_PG0906|hypothetical protein:lipoprotein, putative|NEGATIVE:POSITIVE|[969731,970755]|1025 HSP 1 e-value: 2.0E-13 bit: 79.8 Len: 48 Query Start:237 Query End:284 Subject Strand: POSITIVE Subject Start: 265 Subject End: 312 ............................................................................................................................................................................................................................................aaaagttttcaacaacgaagaagagtttggaatcattctaaataagcg............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ............................................................................................................................................................................................................................................aaaagttttcaacaacgaagacgagtttggaatgattctaaataagcg............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. HSP 2 e-value: 1.0E-8 bit: 63.9 Len: 60 Query Start:414 Query End:473 Subject Strand: POSITIVE Subject Start: 398 Subject End: 457 .............................................................................................................................................................................................................................................................................................................................................................................................................................cgatttatatataaatcattttccatttgtatatagatcgtattcgatttgtatataaat................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ .............................................................................................................................................................................................................................................................................................................................................................................................................................cgatttatatataaatcatttttgatttgtatataaaacgatttcgatttatatataaat................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Subject: NC_002950_PG1119_PG1121|flavodoxin, putative:asparaginyl-tRNA synthetase|POSITIVE:NEGATIVE|[1195544,1196235]|692 HSP 1 e-value: 7.0E-13 bit: 77.8 Len: 67 Query Start:370 Query End:436 Subject Strand: POSITIVE Subject Start: 295 Subject End: 361 .................................................................................................................................................................................................................................................................................................................................................................................cgatgtatatattaatcagtttcaatttatatacagatcgttttcgatttatatataaatcattttc..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... .................................................................................................................................................................................................................................................................................................................................................................................cgatctatatataaagcatttttaatttatatacagatcgttttcgatttatatacaaatcgttttc..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 6.0E-10 bit: 67.9 Len: 50 Query Start:232 Query End:281 Subject Strand: POSITIVE Subject Start: 157 Subject End: 206 .......................................................................................................................................................................................................................................accagaaaagttttcaacaacgaagaagagtttggaatcattctaaataa................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ .......................................................................................................................................................................................................................................accaaaaaacttttcaacaacgaagacaagtttggaatcattctaaataa................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Subject: NC_002950_PG1013_PG1014|acetyl-CoA hydrolase/transferase family protein:TPR domain protein|POSITIVE:POSITIVE|[1073371,1073902]|532 HSP 1 e-value: 7.0E-13 bit: 77.8 Len: 63 Query Start:237 Query End:299 Subject Strand: NEGATIVE Subject Start: 315 Subject End: 377 ............................................................................................................................................................................................................................................aaaagttttcaacaacgaagaagagtttggaatcattctaaataagcgattgaaaggaagagg.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ............................................................................................................................................................................................................................................aaaagttttcaacaatgaagagaagtttggaatggttctaaataagcgactgaaaggaagagg.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. HSP 2 e-value: 6.0E-7 bit: 58.0 Len: 61 Query Start:394 Query End:454 Subject Strand: NEGATIVE Subject Start: 204 Subject End: 264 .........................................................................................................................................................................................................................................................................................................................................................................................................atttatatacagatcgttttcgatttatatataaatcattttccatttgtatatagatcgt................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... .........................................................................................................................................................................................................................................................................................................................................................................................................atttatatacagaacgaattcgatttatatatttatcattttcgatttatatataaatcgt................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: NC_002950_PG0340_PG0343|hypothetical protein:methionine gamma-lyase|POSITIVE:NEGATIVE|[376497,377270]|774 HSP 1 e-value: 7.0E-13 bit: 77.8 Len: 47 Query Start:237 Query End:283 Subject Strand: NEGATIVE Subject Start: 581 Subject End: 627 ............................................................................................................................................................................................................................................aaaagttttcaacaacgaagaagagtttggaatcattctaaataagc.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ............................................................................................................................................................................................................................................aaaagttttcaacaacgaagacgagtttggaatcattccaaataagc.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. HSP 2 e-value: 1.0E-8 bit: 63.9 Len: 60 Query Start:414 Query End:473 Subject Strand: NEGATIVE Subject Start: 435 Subject End: 494 .............................................................................................................................................................................................................................................................................................................................................................................................................................cgatttatatataaatcattttccatttgtatatagatcgtattcgatttgtatataaat................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ .............................................................................................................................................................................................................................................................................................................................................................................................................................cgatttatatataaagctttttcgatttgtatatatatcgttttcattttgtatataaat................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Subject: NC_002950_PG0094_PG0095|outer membrane efflux protein, putative:DNA mismatch repair protein|NEGATIVE:NEGATIVE|[111284,112177]|894 HSP 1 e-value: 3.0E-12 bit: 75.8 Len: 82 Query Start:389 Query End:470 Subject Strand: NEGATIVE Subject Start: 636 Subject End: 717 ....................................................................................................................................................................................................................................................................................................................................................................................................tttcaatttatatacagatcgttttcgatttatatataaatcattttccatttgtatatagatcgtattcgatttgtatata................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ....................................................................................................................................................................................................................................................................................................................................................................................................tttcgatttatatacagaccatttttgttttatatataaatcgttttcaatttgtatataaatcgtatctgatttatatata................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 2.0E-10 bit: 69.9 Len: 47 Query Start:237 Query End:283 Subject Strand: NEGATIVE Subject Start: 779 Subject End: 825 ............................................................................................................................................................................................................................................aaaagttttcaacaacgaagaagagtttggaatcattctaaataagc.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ............................................................................................................................................................................................................................................aaaagttttcaacaacgaagacgagcttggaatcattccaaataagc.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Subject: NC_002950_PG1130_PG1132|TPR domain protein:valyl-tRNA synthetase|POSITIVE:POSITIVE|[1210191,1211051]|861 HSP 1 e-value: 1.0E-11 bit: 73.8 Len: 61 Query Start:223 Query End:283 Subject Strand: NEGATIVE Subject Start: 529 Subject End: 589 ..............................................................................................................................................................................................................................aaaatacagaccagaaaagttttcaacaacgaagaagagtttggaatcattctaaataagc.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ..............................................................................................................................................................................................................................aaaatacgcaccaaaaaagttttcaacaacgaagatgagttttgaatgattctaaataagc.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. HSP 2 e-value: 4.0E-11 bit: 71.9 Len: 64 Query Start:410 Query End:473 Subject Strand: NEGATIVE Subject Start: 361 Subject End: 424 .........................................................................................................................................................................................................................................................................................................................................................................................................................ttttcgatttatatataaatcattttccatttgtatatagatcgtattcgatttgtatataaat................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ .........................................................................................................................................................................................................................................................................................................................................................................................................................ttttcgatttatatataaatcattttcgatctgtatattaatcgttttcaatttatatataaat................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Subject: NC_002950_PG0404_PG0408|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[440197,441041]|845 HSP 1 e-value: 4.0E-11 bit: 71.9 Len: 52 Query Start:232 Query End:283 Subject Strand: NEGATIVE Subject Start: 627 Subject End: 678 .......................................................................................................................................................................................................................................accagaaaagttttcaacaacgaagaagagtttggaatcattctaaataagc.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. .......................................................................................................................................................................................................................................accaaaaaagttttcaacaacgaagacgagtttggaatgattccaaataagc.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. HSP 2 e-value: 3.0E-9 bit: 65.9 Len: 85 Query Start:389 Query End:473 Subject Strand: NEGATIVE Subject Start: 437 Subject End: 521 ....................................................................................................................................................................................................................................................................................................................................................................................................tttcaatttatatacagatcgttttcgatttatatataaatcattttccatttgtatatagatcgtattcgatttgtatataaat................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ ....................................................................................................................................................................................................................................................................................................................................................................................................tttcaatttatatataaatggttttcgttttatatataaatcgttttcaataaatatatagatcgtaagtgattcgtatataaat................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Subject: NC_002950_PG1743_PG1745|2-dehydro-3-deoxyphosphooctonate aldolase:phosphoribulokinase family protein|NEGATIVE:NEGATIVE|[1828439,1829524]|1086 HSP 1 e-value: 2.0E-10 bit: 69.9 Len: 47 Query Start:237 Query End:283 Subject Strand: POSITIVE Subject Start: 282 Subject End: 328 ............................................................................................................................................................................................................................................aaaagttttcaacaacgaagaagagtttggaatcattctaaataagc.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ............................................................................................................................................................................................................................................aaaagttttcaacaacgaagaagtgtttggaatgattccaaataagc.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. HSP 2 e-value: 4.0E-8 bit: 61.9 Len: 99 Query Start:375 Query End:473 Subject Strand: POSITIVE Subject Start: 420 Subject End: 518 ......................................................................................................................................................................................................................................................................................................................................................................................tatatattaatcagtttcaatttatatacagatcgttttcgatttatatataaatcattttccatttgtatatagatcgtattcgatttgtatataaat................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ ......................................................................................................................................................................................................................................................................................................................................................................................tatatattaatcatttttgatttatatataaatcgttttcattttgtatataaatgattttcaataaatatatagatcgaaaatgatttgtatataaat................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Subject: NC_002950_PG1145_PG1148|long-chain-fatty-acid--CoA ligase, putative:hypothetical protein|NEGATIVE:POSITIVE|[1230396,1231343]|948 HSP 1 e-value: 2.0E-10 bit: 69.9 Len: 47 Query Start:237 Query End:283 Subject Strand: NEGATIVE Subject Start: 837 Subject End: 883 ............................................................................................................................................................................................................................................aaaagttttcaacaacgaagaagagtttggaatcattctaaataagc.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ............................................................................................................................................................................................................................................aaaagttttcaacaacgaagacgagtttggaatgattccaaataagc.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. HSP 2 e-value: 6.0E-7 bit: 58.0 Len: 57 Query Start:370 Query End:426 Subject Strand: NEGATIVE Subject Start: 694 Subject End: 750 .................................................................................................................................................................................................................................................................................................................................................................................cgatgtatatattaatcagtttcaatttatatacagatcgttttcgatttatatata............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... .................................................................................................................................................................................................................................................................................................................................................................................cgatttatatataaatcatttgcaataaatatacagatcgttttccatttatatata............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: NC_002950_PG0369_PG0371|phosphopantetheine adenylyltransferase:hypothetical protein|POSITIVE:POSITIVE|[403812,404182]|371 HSP 1 e-value: 2.0E-10 bit: 69.9 Len: 47 Query Start:237 Query End:283 Subject Strand: POSITIVE Subject Start: 149 Subject End: 195 ............................................................................................................................................................................................................................................aaaagttttcaacaacgaagaagagtttggaatcattctaaataagc.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ............................................................................................................................................................................................................................................aaaagttttcaacaacgaagatgagtttggaatgattccaaataagc.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. HSP 2 e-value: 1.0E-5 bit: 54.0 Len: 47 Query Start:389 Query End:435 Subject Strand: POSITIVE Subject Start: 301 Subject End: 347 ....................................................................................................................................................................................................................................................................................................................................................................................................tttcaatttatatacagatcgttttcgatttatatataaatcatttt...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ....................................................................................................................................................................................................................................................................................................................................................................................................tttcaatttgtatacaaatcgtttccgttttatatataaatcgtttt...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: NC_002950_PG1375_PG1378|hypothetical protein:A/G-specific adenine glycosylase|POSITIVE:NEGATIVE|[1456804,1457804]|1001 HSP 1 e-value: 1.0E-8 bit: 63.9 Len: 52 Query Start:421 Query End:472 Subject Strand: POSITIVE Subject Start: 462 Subject End: 513 ....................................................................................................................................................................................................................................................................................................................................................................................................................................tatataaatcattttccatttgtatatagatcgtattcgatttgtatataaa................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ....................................................................................................................................................................................................................................................................................................................................................................................................................................tatataaatcattttcgatttgtatatagatcgtttttgatctatatataaa................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. HSP 2 e-value: 4.0E-8 bit: 61.9 Len: 47 Query Start:237 Query End:283 Subject Strand: POSITIVE Subject Start: 323 Subject End: 369 ............................................................................................................................................................................................................................................aaaagttttcaacaacgaagaagagtttggaatcattctaaataagc.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ............................................................................................................................................................................................................................................aaaagttttcaacaatgaagatgagtttagaatcattccaaataagc.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Subject: NC_002950_PG0994_PG0995|hypothetical protein:hypothetical protein|POSITIVE:NEGATIVE|[1055160,1055558]|399 HSP 1 e-value: 4.0E-8 bit: 61.9 Len: 59 Query Start:414 Query End:472 Subject Strand: NEGATIVE Subject Start: 283 Subject End: 341 .............................................................................................................................................................................................................................................................................................................................................................................................................................cgatttatatataaatcattttccatttgtatatagatcgtattcgatttgtatataaa................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. .............................................................................................................................................................................................................................................................................................................................................................................................................................cgatttatatataaaccattttcaatttatatatagattgttttagatttatatataaa................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. HSP 2 e-value: 4.0E-8 bit: 61.9 Len: 59 Query Start:370 Query End:428 Subject Strand: NEGATIVE Subject Start: 283 Subject End: 341 .................................................................................................................................................................................................................................................................................................................................................................................cgatgtatatattaatcagtttcaatttatatacagatcgttttcgatttatatataaa............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. .................................................................................................................................................................................................................................................................................................................................................................................cgatttatatataaaccattttcaatttatatatagattgttttagatttatatataaa............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Subject: NC_002950_PG2083_PG2085|hypothetical protein:tryptophanyl-tRNA synthetase|NEGATIVE:POSITIVE|[2184598,2185671]|1074 HSP 1 e-value: 2.0E-7 bit: 60.0 Len: 46 Query Start:237 Query End:282 Subject Strand: NEGATIVE Subject Start: 692 Subject End: 737 ............................................................................................................................................................................................................................................aaaagttttcaacaacgaagaagagtttggaatcattctaaataag............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ............................................................................................................................................................................................................................................aaaagttttcaacaacgaagctgagtttagaatcattccaaataag............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 6.0E-7 bit: 58.0 Len: 41 Query Start:414 Query End:454 Subject Strand: NEGATIVE Subject Start: 564 Subject End: 604 .............................................................................................................................................................................................................................................................................................................................................................................................................................cgatttatatataaatcattttccatttgtatatagatcgt................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... .............................................................................................................................................................................................................................................................................................................................................................................................................................cgatttatatataaaccgttttcgatttgtatatagatcgt................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ GAGAAAAAACGAGAUUAUCCGUGCAGCAAAAGCCUUGCACGCCACAAAGGUAGGGAUUUACUCACUGAGACAAAGCUUUUUACCCGAUUCAGAGCGGAAUGCCUACAGUCUGAUCUUCGACAUUUGCAGUCUGUUAGCUAUAUGUAGUCCGGAAGCAGUACUUCGUUUUUUUGAUUCGAUAAUGCCGGAUACAAUCACCAUCCCAUCUGAAAAUAUUUCACGAAAAUACAGACCAGAAAAGUUUUCAACAACGAAGAAGAGUUUGGAAUCAUUCUAAAUAAGCGAUUGAAAGGAAGAGGUUUUCAAGGUAAAAAUGUUCAUGAAUCGGACUUUUGGGAGUUGAGGUCUGCUUUGAAAGAGUUUCGAUGGCGAUGUAUAUAUUAAUCAGUUUCAAUUUAUAUACAGAUCGUUUUCGAUUUAUAUAUAAAUCAUUUUCCAUUUGUAUAUAGAUCGUAUUCGAUUUGUAUAUAAAUAGUAGAACAGAAAAGGCUGUUUGGAGAGCUGAUAUAAAAGAGACACCCGCUCGAUUCGUGGCCGAACCGAGCGGGUGCCUUAUAGAUUUGCAGGAGUGGAGAGGAAUGAUUAGUCCCUAUUCCUUGUGCAAUGUUUGUCUGUUUUCAAAUGCGAUGAUGCCAUAUAAAUAAAUGGAUGGGAUGGGUGAGAGUAGAUUGUGAAGUAGGAGAGUAUAUUUCAUGCGUUCGGAUCGUUAGGAAAGUUGGUUGAUAGGAUGUAAUAGUUUAAUAUAUAGUUGCUUAUUGCUCGUUUAGAAUCUUUGUUUGCCGGCAAAUGUAGCAAAAAAGUACGAUGCGAAUGAAUCGAAAAUUUGCUUUCCGUCAAGCCUCUUUUCUCACUAUGCAGGUGAGUCCGAAAAAACAGUUCCUAAACCUCUUUCCGAGCAAUCAUCUGAGGGGUAAAUAUGACAGAGACAUAAGGUAUUACGGUGUGAUUACAUAUAUUUGUACUUAAAUAAUCCACUACAAAACGG .........((........((((((((....))..))))))........(((((((((..(((...(((......)))(((((((..((((((...((((((...........(((((.((.((..(((((((.........((((.(((((..........(((......)))..........))))))))).((((((((((((((((((...(((((.....(..((((((.(((.....)))..((((..(((((.(((((((.....)))))))...(((((.(...(((.(..(((.......)))..).))).).)))))..)))))....)))).))))))..))))))...)))).((((((.(((((......((((((((..((((((((((((((((....((((((((((((((((........))))))))))))))))....))))))))))))))))....((((((......))))))...))))))))......(((.((((((((((.((((....)))).)))))))))).)))(((((((((((.(((.(((.(((.((.....)).))).)))))).))))).....))))))......)))))....))))))..........))))))))).)))))...)))))))..)))).)))))...........)))))).(((.(((.((((((..((((..(((((.(((((((..((((.....)))).)))))))..((((.........(((((.(((.......((((((......((((........))))....))))))..))).))))).......((((((.....)))))).......))))...))))))))).)))))).))).))).))))))))))))).......))).....((((((....(((((....)))))....))))))....))))).))))....)). (-280.30) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ CCGUUUUGUAGUGGAUUAUUUAAGUACAAAUAUAUGUAAUCACACCGUAAUACCUUAUGUCUCUGUCAUAUUUACCCCUCAGAUGAUUGCUCGGAAAGAGGUUUAGGAACUGUUUUUUCGGACUCACCUGCAUAGUGAGAAAAGAGGCUUGACGGAAAGCAAAUUUUCGAUUCAUUCGCAUCGUACUUUUUUGCUACAUUUGCCGGCAAACAAAGAUUCUAAACGAGCAAUAAGCAACUAUAUAUUAAACUAUUACAUCCUAUCAACCAACUUUCCUAACGAUCCGAACGCAUGAAAUAUACUCUCCUACUUCACAAUCUACUCUCACCCAUCCCAUCCAUUUAUUUAUAUGGCAUCAUCGCAUUUGAAAACAGACAAACAUUGCACAAGGAAUAGGGACUAAUCAUUCCUCUCCACUCCUGCAAAUCUAUAAGGCACCCGCUCGGUUCGGCCACGAAUCGAGCGGGUGUCUCUUUUAUAUCAGCUCUCCAAACAGCCUUUUCUGUUCUACUAUUUAUAUACAAAUCGAAUACGAUCUAUAUACAAAUGGAAAAUGAUUUAUAUAUAAAUCGAAAACGAUCUGUAUAUAAAUUGAAACUGAUUAAUAUAUACAUCGCCAUCGAAACUCUUUCAAAGCAGACCUCAACUCCCAAAAGUCCGAUUCAUGAACAUUUUUACCUUGAAAACCUCUUCCUUUCAAUCGCUUAUUUAGAAUGAUUCCAAACUCUUCUUCGUUGUUGAAAACUUUUCUGGUCUGUAUUUUCGUGAAAUAUUUUCAGAUGGGAUGGUGAUUGUAUCCGGCAUUAUCGAAUCAAAAAAACGAAGUACUGCUUCCGGACUACAUAUAGCUAACAGACUGCAAAUGUCGAAGAUCAGACUGUAGGCAUUCCGCUCUGAAUCGGGUAAAAAGCUUUGUCUCAGUGAGUAAAUCCCUACCUUUGUGGCGUGCAAGGCUUUUGCUGCACGGAUAAUCUCGUUUUUUCUC (((.(((..((((((...............((((((((.((.....((((.....((((.......)))).))))......((((((.((.((((..(((((..((((..(((((((((((((((((.......)))))......((.((((.(((.((((((....((((.(....).))))......))))))....((((((..................)).))))...........................)))..))))))..............)))))).....)))))).....)))))))))......(((..(((((.((((((((...........(((((...........(((((...........(((((..((.....((((........)))).....))..))))).......((((((((((((((((((....)))))))))))))))))).))))).(((((.......(((((......)))))...(.(((((((((((.((((....((((.((((((.((((........)))).)))))).))))....)))).))))))))))).)...))))).............))))).((((.(.(((((..(((((((.((((.......(((..((.((((.............((((((.........)))))).............)))).))...))).......))))..(((.....))).))))))).......))))).).)))).)))))))))))))..))))))))))))))).............((((.....))))..)).))))))))(((.((((.(((..............))).)))).)))..))))))..))).)))..(((((((.((((((..(((((((((..(((((((....)).))...)))..)))))).)))))))))....)))))))... (-229.42) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 989 70 21 161 112 NC_002950:PG0022|5end_sulfate_permease_family_protein_26796..27026_NEGATIVE 566 280 233 200 153 NC_002950:PG1148|5end_hypothetical_protein_1231204..1231434_POSITIVE 562 553 511 78 38 NC_002950:PG1223|5end_hypothetical_protein_1299461..1299691_POSITIVE 559 279 232 231 184 NC_002950:PG0996|5end_conserved_hypothetical_protein_TIGR01777_1055592..1055822_POSITIVE 459 275 235 231 191 NC_002950:PG1166|5end_hypothetical_protein_1248443..1248673_NEGATIVE 440 550 515 135 100 NC_002950:PG1695|5end_hypothetical_protein_1779440..1779670_POSITIVE 431 550 502 156 100 NC_002950:PG0289|5end_hypothetical_protein_322860..323090_POSITIVE 428 470 421 134 85 NC_002950:PG1222|5end_hypothetical_protein_1299392..1299622_NEGATIVE 408 570 525 62 1 NC_002950:PG1638|5end_thioredoxin_family_protein_1719650..1719880_NEGATIVE 400 578 531 164 116 NC_002950:PG0011|5end_glycosyl_hydrolase,_family_3_11494..11724_POSITIVE 389 587 545 59 4 NC_002950:PG1215|5end_lipoprotein_protein,_putative_1294621..1294851_POSITIVE 387 560 519 70 24 NC_002950:PG0679|5end_outer_membrane_efflux_protein_729594..729824_POSITIVE 383 553 521 47 10 NC_002950:PG1979|5end_hypothetical_protein_2067272..2067502_POSITIVE 382 820 771 213 167 NC_002950:PG1866|5end_hypothetical_protein_1964531..1964761_POSITIVE 382 350 301 204 137 NC_002950:PG1179|5end_hypothetical_protein_1261132..1261362_NEGATIVE 376 560 518 46 5 NC_002950:PG1804|5end_V-type_ATP_synthase_subunit_B_1898254..1898484_POSITIVE 375 546 501 68 14 NC_002950:PG0726|5end_lipoprotein,_putative_778392..778622_NEGATIVE 373 558 519 129 69 NC_002950:PG1006|5end_hypothetical_protein_1066478..1066708_NEGATIVE 373 578 533 109 58 NC_002950:PG0361|5end_hypothetical_protein_394094..394324_POSITIVE 373 530 481 59 7 NC_002950:PG0127|5end_ferrochelatase_148550..148780_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 546 554 511 54 7 NC_002950:PG1274|3end_elongation_factor_P_1352489..1352639_POSITIVE 438 567 521 69 23 NC_002950:PG1866|3end_hypothetical_protein_1964736..1964886_POSITIVE 428 577 531 59 15 NC_002950:PG1889|3end_hypothetical_protein_1987090..1987240_POSITIVE 427 550 507 50 1 NC_002950:PG0568|3end_elongation_factor_P_623999..624149_NEGATIVE 407 276 233 98 57 NC_002950:PG2166|3end_hypothetical_protein_2271999..2272149_POSITIVE 405 564 531 145 97 NC_002950:PG0291|3end_hypothetical_protein_326622..326772_POSITIVE 402 569 521 116 56 NC_002950:PG1942|3end_30S_ribosomal_protein_S12_2027946..2028096_NEGATIVE 391 553 512 130 79 NC_002950:PG1594|3end_ComEC/Rec2-related_protein_1672052..1672202_NEGATIVE 389 538 493 117 63 NC_002950:PG2091|3end_dihydroneopterin_aldolase_2191610..2191760_POSITIVE 382 350 301 126 59 NC_002950:PG1180|3end_hypothetical_protein_1261210..1261360_NEGATIVE 375 546 501 71 17 NC_002950:PG0727|3end_hypothetical_protein_778389..778539_NEGATIVE 375 554 521 144 102 NC_002950:PG0481|3end_2-amino-3-ketobutyrate_coenzyme_A_ligase_521432..521582_NEGATIVE 373 558 519 89 29 NC_002950:PG1007|3end_transcriptional_regulator,_GntR_family_1066518..1066668_NEGATIVE 373 578 533 87 36 NC_002950:PG0360|3end_lemA_protein_394152..394302_POSITIVE 372 554 517 143 103 NC_002950:PG0371|3end_hypothetical_protein_404224..404374_POSITIVE 369 552 513 54 14 NC_002950:PG0715|3end_transporter_768676..768826_NEGATIVE 366 578 533 148 96 NC_002950:PG0222|3end_DNA-binding_protein,_histone-like_family_255913..256063_NEGATIVE 366 566 528 58 14 NC_002950:PG0212|3end_precorrin-6Y_C5,15-methyltransferase,_decarboxylating_247824..247974_NEGATIVE 360 564 531 59 23 NC_002950:PG0529|3end_carbamoyl-phosphate_synthase_small_subunit_575790..575940_POSITIVE 353 577 534 72 21 NC_002950:PG0148|3end_sigma-54-dependent_transcriptional_regulator_169654..169804_NEGATIVE