Query sequence: gi|34540361|ref|NP_904840.1|
Accession:      [none]
Description:    hypothetical protein PG0547 [Porphyromonas gingivalis W83]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
HTH_5    Bacterial regulatory protein, arsR family       15.3     0.0013   1
HTH_11   HTH domain                                      15.4     0.0024   1
NACHT    NACHT domain                                     7.8      0.047   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
NACHT      1/1      37    53 ..     1    17 [.     7.8    0.047
HTH_11     1/1     244   286 ..     1    43 [.    15.4   0.0024
HTH_5      1/1     246   291 ..     5    48 .]    15.3   0.0013

Alignments of top-scoring domains:
NACHT: domain 1 of 1, from 37 to 53: score 7.8, E = 0.047
                   *->rtvilqGeAGsGKTtLl<-*
                      r++ + G+ G+GKTt+l   
  gi|3454036    37    RLIGIKGARGMGKTTFL    53   

HTH_11: domain 1 of 1, from 244 to 286: score 15.4, E = 0.0024
                   *->RllqiLelLlqarepfvsgqeLAerLgVSRrTirrDIkaLeal<-*
                      +l+++L+lL q  +  + ++ +A++ + SR+Ti +++k L+++   
  gi|3454036   244    KLRKLLYLLGQRAPGSLNISSIAKEVDTSRTTITNYLKYLSEA    286  

HTH_5: domain 1 of 1, from 246 to 291: score 15.3, E = 0.0013
                   *->lkILylLsee..gelcvceLaeilglSqstvShHLkkLreaGLVek<
                      +k+LylL ++ +g+l ++ +a++++ S+ t+  +Lk L ea+L++  
  gi|3454036   246    RKLLYLLGQRapGSLNISSIAKEVDTSRTTITNYLKYLSEARLIKE  291  

                   -*
                     
  gi|3454036     -    -