Query sequence: gi|34540359|ref|NP_904838.1|
Accession:      [none]
Description:    hypothetical protein PG0545 [Porphyromonas gingivalis W83]

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
Methylase_S Type I restriction modification DNA speci    40.2    1.1e-10   3

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
Methylase_S   1/3      44   164 ..     9   145 ..     8.4    0.068
Methylase_S   2/3     260   410 ..     1   168 [.    14.4   0.0015
Methylase_S   3/3     518   667 ..     1   166 [.    17.4  0.00023

Alignments of top-scoring domains:
Methylase_S: domain 1 of 3, from 44 to 164: score 8.4, E = 0.068
                   *->vakikgGktlsksekeewkkngkyPfisagdi.ngyldylskgyyke
                      +++++ G++           + ++Pf+++++++++ +   +++++ +
  gi|3454035    44    IFNVNAGNFS----------DSGVPFVRISNLkGMKIN--TTDIVCI 78   

                   telg.kyinkyildkgdIlissrGasiGdvaiadavdnnkfianqriyvi
                    ++ +    k  l  +dI++s  + ++  +  +d     +++++q+++++
  gi|3454035    79 PRAIhDDNHKTALVRNDIILSKTAIPAASIVSID-----ECNTSQDTVAV 123  

                   kpkdnlkidtkFLyylLksikfqnklkklasgstsipnlnkk<-*
                   k+  n k+++ +L  +L++++ ++++kk+ sg + + +ln +   
  gi|3454035   124 KLALNSKLNSPYLVTFLNTKYGMEQMKKRFSGNV-QMHLNLD    164  

Methylase_S: domain 2 of 3, from 260 to 410: score 14.4, E = 0.0015
                   *->wevrkLgevakik..........gGktlsksekeewkkngkyPfisa
                        v +Lgev+ ik+++ +++ + + ++++ +++     ++  ++ ++
  gi|3454035   260    GGVAPLGEVCTIKdsnytpecdmKYRYIELANI-----GKSGDITGC 301  

                   gdi.ngyldylskgyyketelgkyinkyildkgdIlissrGasiGdvaia
                      ++++l               + + +i+  gd+++ss+  s +  a++
  gi|3454035   302 LYEnGEDLP--------------TRARRIVTQGDVIVSSIEGSLSSCALI 337  

                   davdnnkfianqriyvikpkdnlkidtkFLyylLksikfqnklkklasgs
                   + +d+   +++ ++yv+ ++    i+++ L  l ks  +q +l k a ++
  gi|3454035   338 T-DDYDQSLCSTGFYVVRSN---QINPETLLTLFKSLPIQ-QLLKKACSG 382  

                   tsipnlnkkdlkfkikiplPpLeESLiQqkIa<-*
                   t+  ++ k  ++ ki+ipl  +e    Q +Ia   
  gi|3454035   383 TILTGIGKQEFE-KIPIPLIRPEV---QEEIA    410  

Methylase_S: domain 3 of 3, from 518 to 667: score 17.4, E = 0.00023
                   *->wevrkLgevakikgGktlsksekeewkkngkyPfisagdi.ngyldy
                        +++Lg++++i +  ++++  + ++  + ++Pf++ +d+++  +  
  gi|3454035   518    IPTKRLGDIVNIHK--SIEPGSDAYQ--ENGIPFVRVADLsKFGI-- 558  

                   lskgyyketelg.k.yinkyildkgdIlissrGasiGdvaiadavdnnkf
                       ++++ +l++ +y+   +  k++Il+s +G s+G    ++  ++ + 
  gi|3454035   559 ----ETSSICLDsStYSTAPRPRKNTILLSKDG-SVGIAYKME--EDADI 601  

                   ianqriyvikpkdnlkidtkFLyylLksikfqnklkklasgstsipnlnk
                   i+++ i  +  k + ++++++L + L+s+ ++++ +  a gs  i++ + 
  gi|3454035   602 ITSGAILHLSMKGK-ELLPDYLTLVLNSPIVRMQAERDAGGSI-IQHWKP 649  

                   kdlkfkikiplPpLeESLiQqk<-*
                   + ++ ++ ip  p  +   Qqk   
  gi|3454035   650 SEIS-QVIIPMLPVYI---QQK    667