Query sequence: gi|24380061|ref|NP_722016.1|
Accession:      [none]
Description:    hypothetical protein SMU.1683c [Streptococcus mutans UA159]

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
HTH_11      HTH domain                                   74.2      9e-20   1
Rrf2        Transcriptional regulator                    29.1    1.8e-08   1
HTH_DeoR    DeoR-like helix-turn-helix domain            23.3    6.5e-06   1
Sigma70_ECF ECF sigma factor                             14.3    0.00084   1
HTH_5       Bacterial regulatory protein, arsR family    14.1     0.0029   1
HTH_7       Helix-turn-helix domain of resolvase         11.0       0.06   1
TrmB        Sugar-specific transcriptional regulator      9.3      0.073   1
MerR        MerR family regulatory protein                9.7      0.095   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
Rrf2          1/1       5    63 ..    12    69 ..    29.1  1.8e-08
HTH_11        1/1       5    60 ..     1    62 []    74.2    9e-20
HTH_DeoR      1/1       5    47 ..     1    43 [.    23.3  6.5e-06
HTH_5         1/1       7    47 ..     5    45 ..    14.1   0.0029
TrmB          1/1      10    42 ..    16    48 ..     9.3    0.073
HTH_7         1/1      19    42 ..    25    48 .]    11.0     0.06
MerR          1/1      20    37 ..     1    18 [.     9.7    0.095
Sigma70_ECF   1/1      20    40 ..   179   199 ..    14.3  0.00084

Alignments of top-scoring domains:
Rrf2: domain 1 of 1, from 5 to 63: score 29.1, E = 1.8e-08
                   *->haLlyLAlhpgegpvtseeIAerqgispvyLrkilakLrkaGL.VkS
                      + L+ L+l++++  +t++e+Ae + +s++ + + l  L +aG+++ S
  gi|2438006     5    RLLAILSLLSDRNRITAKELAEKFEVSKRTIYRDLESLNQAGIpIVS 51   

                   vRGpgGGYrLAr<-*
                     G+ GG +L +   
  gi|2438006    52 YAGRDGGLSLMK    63   

HTH_11: domain 1 of 1, from 5 to 60: score 74.2, E = 9e-20
                   *->RllqiLelLlqarepfvsgqeLAerLgVSRrTirrDIkaLealGeey
                      Rll+iL lL + r++ ++++eLAe+++VS rTi+rD+++L+++G   
  gi|2438006     5    RLLAILSLL-SDRNR-ITAKELAEKFEVSKRTIYRDLESLNQAG--- 46   

                   GvpIesepgrgGGYr<-*
                    +pI+s +gr+GG     
  gi|2438006    47 -IPIVSYAGRDGGLS    60   

HTH_DeoR: domain 1 of 1, from 5 to 47: score 23.3, E = 6.5e-06
                   *->RieqIlelLkqqGtlsveeLvelldVSeaTiRRDLneLeeqGl<-*
                      R+ +Il lL ++  ++ +eL+e + VS+ Ti RDL  L  +G+   
  gi|2438006     5    RLLAILSLLSDRNRITAKELAEKFEVSKRTIYRDLESLNQAGI    47   

HTH_5: domain 1 of 1, from 7 to 47: score 14.1, E = 0.0029
                   *->lkILylLseegelcvceLaeilglSqstvShHLkkLreaGL<-*
                      l IL+lLs+++  ++ eLae +++S+ t+ + L  L +aG+   
  gi|2438006     7    LAILSLLSDRNRITAKELAEKFEVSKRTIYRDLESLNQAGI    47   

TrmB: domain 1 of 1, from 10 to 42: score 9.3, E = 0.073
                   *->laLLEklGpatareiaeesgvPrskvYevLrsL<-*
                      l LL+ + + ta+e+ae+ +v++ ++Y+ L+sL   
  gi|2438006    10    LSLLSDRNRITAKELAEKFEVSKRTIYRDLESL    42   

HTH_7: domain 1 of 1, from 19 to 42: score 11.0, E = 0.06
                   *->isikqIAkefniSRsTvYRylaas<-*
                      i++k++A+ f +S+ T+YR l+++   
  gi|2438006    19    ITAKELAEKFEVSKRTIYRDLESL    42   

MerR: domain 1 of 1, from 20 to 37: score 9.7, E = 0.095
                   *->tIgevAellGvsprtLRy<-*
                      t +e+Ae++ vs rt+++   
  gi|2438006    20    TAKELAEKFEVSKRTIYR    37   

Sigma70_ECF: domain 1 of 1, from 20 to 40: score 14.3, E = 0.00084
                   *->sveEiAekLgvSkRTveRnWa<-*
                      + +E+Aek++vSkRT++R+++   
  gi|2438006    20    TAKELAEKFEVSKRTIYRDLE    40