Query sequence: gi|24379866|ref|NP_721821.1|
Accession:      [none]
Description:    hypothetical protein SMU.1471c [Streptococcus mutans UA159]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
HTH_11   HTH domain                                      84.2    1.4e-22   1
HTH_DeoR DeoR-like helix-turn-helix domain               14.2     0.0027   1
Mga      Mga helix-turn-helix domain                     13.5     0.0033   1
Rrf2     Transcriptional regulator                       10.6     0.0082   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Mga        1/1       1    42 [.    13    55 ..    13.5   0.0033
HTH_11     1/1       5    60 ..     1    62 []    84.2  1.4e-22
HTH_DeoR   1/1       5    47 ..     1    43 [.    14.2   0.0027
Rrf2       1/1      19    61 ..    26    67 ..    10.6   0.0082

Alignments of top-scoring domains:
Mga: domain 1 of 1, from 1 to 42: score 13.5, E = 0.0033
                   *->lkeSlklqlLkflfnfqeffsltelaqklfiSestlyRlikkl<-*
                      ++eS  +q++ +l+  +++++   la+++ +S+ t+yR i+ l   
  gi|2437986     1    MRESRLFQIIYQLL-TKKKVTAANLAKQFEVSVRTIYRDIDAL    42   

HTH_11: domain 1 of 1, from 5 to 60: score 84.2, E = 1.4e-22
                   *->RllqiLelLlqarepfvsgqeLAerLgVSRrTirrDIkaLealGeey
                      Rl+qi+++Ll +++  v+++ LA++++VS rTi+rDI+aL+++G   
  gi|2437986     5    RLFQIIYQLLTKKK--VTAANLAKQFEVSVRTIYRDIDALSSSG--- 46   

                   GvpIesepgrgGGYr<-*
                    +pI++ +g++GG++   
  gi|2437986    47 -IPIYASQGKNGGIQ    60   

HTH_DeoR: domain 1 of 1, from 5 to 47: score 14.2, E = 0.0027
                   *->RieqIlelLkqqGtlsveeLvelldVSeaTiRRDLneLeeqGl<-*
                      R+ qI+  L+ + +++   L+ ++ VS+ Ti RD++ L+ +G+   
  gi|2437986     5    RLFQIIYQLLTKKKVTAANLAKQFEVSVRTIYRDIDALSSSGI    47   

Rrf2: domain 1 of 1, from 19 to 61: score 10.6, E = 0.0082
                   *->vtseeIAerqgispvyLrkilakLrkaGL.VkSvRGpgGGYrL<-*
                      vt++ +A+ + +s + + + +  L+ +G+++ +  G++GG++L   
  gi|2437986    19    VTAANLAKQFEVSVRTIYRDIDALSSSGIpIYASQGKNGGIQL    61