Query sequence: gi|24379802|ref|NP_721757.1|
Accession:      [none]
Description:    hypothetical protein SMU.1397c [Streptococcus mutans UA159]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
HTH_3    Helix-turn-helix                                29.6    2.6e-07   1
MerR     MerR family regulatory protein                  10.3      0.062   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
HTH_3      1/1      22    76 ..     1    60 []    29.6  2.6e-07
MerR       1/1      32    53 ..     1    22 [.    10.3    0.062

Alignments of top-scoring domains:
HTH_3: domain 1 of 1, from 22 to 76: score 29.6, E = 2.6e-07
                   *->lkelRklkklglsqlseeLAeklGskvsrstiskiEnGkr.Psletl
                      l++lR      ls   +e+A+ lG  +++ t+  +E + ++++++ +
  gi|2437980    22    LRALRV--NYSLSP--KEVADCLG--IPQHTLLSYEEDSSeIPIQLA 62   

                   kklakaLgvsldel<-*
                     la+++++sld +   
  gi|2437980    63 NDLANYYDISLDSI    76   

MerR: domain 1 of 1, from 32 to 53: score 10.3, E = 0.062
                   *->tIgevAellGvsprtLRyYere<-*
                      +++evA+ lG++ +tL  Ye++   
  gi|2437980    32    SPKEVADCLGIPQHTLLSYEED    53