Query sequence: gi|24379498|ref|NP_721453.1|
Accession:      [none]
Description:    hypothetical protein SMU.1061 [Streptococcus mutans UA159]

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N 
--------     -----------                                -----    ------- ---
UPF0122      Putative helix-turn-helix protein, YlxM    213.7    3.7e-61   1
Sigma70_r4_2 Sigma-70, region 4                          23.5    4.9e-06   1
Sigma70_r4   Sigma-70, region 4                          18.9    0.00015   1
HTH_10       HTH DNA binding domain                      12.3     0.0045   2
CENP-B_N     CENP-B N-terminal DNA-binding domain        10.8       0.03   1
HTH_11       HTH domain                                  11.3      0.032   1

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
UPF0122        1/1       3   103 ..     1   101 []   213.7  3.7e-61
Sigma70_r4     1/1      16    52 ..     1    41 [.    18.9  0.00015
HTH_10         1/2      20    28 ..     1     9 [.     2.9      3.6
Sigma70_r4_2   1/1      28    63 ..    19    54 .]    23.5  4.9e-06
HTH_10         2/2      35    64 ..    23    53 .]     9.4    0.034
CENP-B_N       1/1      35    66 ..    24    55 .]    10.8     0.03
HTH_11         1/1      37    58 ..    18    39 ..    11.3    0.032

Alignments of top-scoring domains:
UPF0122: domain 1 of 1, from 3 to 103: score 213.7, E = 3.7e-61
                   *->leKtlrlnaLFdiYqsLLTdKQknYfeLYYldDlSLsEIAEefnvSR
                      +eKt+r+naLF++Y++LLTdKQ+nY+eLYY+dD+SL+EIAEef+vSR
  gi|2437949     3    IEKTNRMNALFEFYAALLTDKQMNYIELYYADDYSLAEIAEEFDVSR 49   

                   qAVYDnIkRteklLesYEeKLhLyeKykkRnelyekIkdkllkdkdleqk
                   qAVYDnIkRtek+Le+YE+KLh+y++y +R+e+++ I++k+++d +l+ k
  gi|2437949    50 QAVYDNIKRTEKILEDYEMKLHMYSDYVVRSEIFDAIMKKYPNDPYLQNK 99   

                   lkli<-*
                   + ++   
  gi|2437949   100 ISIL    103  

Sigma70_r4: domain 1 of 1, from 16 to 52: score 18.9, E = 0.00015
                   *->aLdqLpereRevlvLRyGLddgeglTleEIaerLGiSrerV<-*
                        + L++++   ++L+y     ++++l+EIae++++Sr  V   
  gi|2437949    16    YAALLTDKQMNYIELYY----ADDYSLAEIAEEFDVSRQAV    52   

HTH_10: domain 1 of 2, from 20 to 28: score 2.9, E = 3.6
                   *->LTdrQleiL<-*
                      LTd+Q+ ++   
  gi|2437949    20    LTDKQMNYI    28   

Sigma70_r4_2: domain 1 of 1, from 28 to 63: score 23.5, E = 4.9e-06
                   *->flLryleglsyaEIAelLGisegtVksrlsRArkkL<-*
                      ++L+y +++s aEIAe++++s ++V  +++R  k L   
  gi|2437949    28    IELYYADDYSLAEIAEEFDVSRQAVYDNIKRTEKIL    63   

HTH_10: domain 2 of 2, from 35 to 64: score 9.4, E = 0.034
                   *->rvtlkdLAkelGISksTlsehLRrAerKlie<-*
                      +++l+++A+e+++S++++++ ++r  +K++e   
  gi|2437949    35    DYSLAEIAEEFDVSRQAVYDNIKR-TEKILE    64   

CENP-B_N: domain 1 of 1, from 35 to 66: score 10.8, E = 0.03
                   *->DLSkksvAreFgipkSTlsdilknKkkllefl<-*
                      D S++++A eF ++++ ++d  k  +k+le     
  gi|2437949    35    DYSLAEIAEEFDVSRQAVYDNIKRTEKILEDY    66   

HTH_11: domain 1 of 1, from 37 to 58: score 11.3, E = 0.032
                   *->sgqeLAerLgVSRrTirrDIka<-*
                      s +e+Ae+++VSR++++  Ik+   
  gi|2437949    37    SLAEIAEEFDVSRQAVYDNIKR    58