Query sequence: gi|24378888|ref|NP_720843.1|
Accession:      [none]
Description:    hypothetical protein SMU.393 [Streptococcus mutans UA159]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
DUF536   Protein of unknown function, DUF536             48.1    1.5e-12   1
DUF1323  Protein of unknown function (DUF1323)           16.3    0.00051   1
HTH_11   HTH domain                                      13.0      0.011   1
MerR     MerR family regulatory protein                  11.9      0.022   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
DUF1323    1/1       6    22 ..     1    18 [.    16.3  0.00051
HTH_11     1/1       6    27 ..    18    39 ..    13.0    0.011
MerR       1/1       6    21 ..     1    16 [.    11.9    0.022
DUF536     1/1     100   147 ..     1    60 []    48.1  1.5e-12

Alignments of top-scoring domains:
DUF1323: domain 1 of 1, from 6 to 22: score 16.3, E = 0.00051
                   *->MTteELAellGvarQTvN<-*
                       T  ELAe+lGv+rQ vN   
  gi|2437888     6    -TVSELAEILGVSRQAVN    22   

HTH_11: domain 1 of 1, from 6 to 27: score 13.0, E = 0.011
                   *->sgqeLAerLgVSRrTirrDIka<-*
                      + +eLAe LgVSR+++ + +k+   
  gi|2437888     6    TVSELAEILGVSRQAVNNRVKS    27   

MerR: domain 1 of 1, from 6 to 21: score 11.9, E = 0.022
                   *->tIgevAellGvsprtL<-*
                      t++e+Ae+lGvs++++   
  gi|2437888     6    TVSELAEILGVSRQAV    21   

DUF536: domain 1 of 1, from 100 to 147: score 48.1, E = 1.5e-12
                   *->istldkqleekdkqieeliefykkeiqeqqkLLDQQQrLaLqdkkKi
                      ++++d+ql+ kd+qi+e+           +k++DQQQ+L+L +++++
  gi|2437888   100    LESKDEQLRIKDVQIAEK-----------DKQIDQQQQLTLTAMQDK 135  

                   qkLelqLLEEyKa<-*
                   ++L+l +L E+Ka   
  gi|2437888   136 EQLKL-ELDEAKA    147